Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Forward (+)

36523305 .. 36524078

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG184200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGATTTGAGGTCTGAAATCGATCTCTGTTCTCGCAAGCGCAAGGAGAGCAATCTCCGACGCGTCGTTGAGACCTCGGAAGGAAATCTCCGCATCTTCGCTCTTGCTTCCTCCTCCTCCGACCACCACGACGACGACAACGGAGACAACGGCGGCTCCAGAAAACGCATGAGGCGAGACCGCGGCTGCAACGCCGTCGTTTCATCCACCAAGCTCGCCGTGGAGCCCACCAGACCCGCCGTGAAACCCTATGAGGACGGTGGGGATCTGAATATTGGGGAGTTCGAGAAACACACAAAGGGCATCGGCATGAAGTTGCTGATGAAGATGGGCTATAACGGACGCGGACTCGGCAGAAACGAGGAAGGTATTGTGAGCCCAATTGAAGCCGAATTGAGGCCCAAAAATGAAGGTCTTGGTTTTGATTACAAGGAGGGGACTAAGCTGCGGCGGCGTCCCACATCGTTTGTGAAAGCCAAGGCGGTGCAGAAAAGTGTGGGTAATGGTGACAAAGATCACAAGAAGACCAAAACAGAAATAGCCAAAAAACCAAGCAGCCTAAACACTAGTACAGTGGAAGGACACAAGCCCAACGAGCAGCCTAATGAGGCAATTACCAGTGCCGCCGGGATGGGGAAGAAGACGAGTACAAAAGGTGTCGATTTGCTGGAAAAGGTGATGGCTGATATGAGAAGACCTCTTGATGGAATCTTGGCCGACCTTGAGAATTTGAGTTTGAAAGATACAACCTCCAGGTGCATCTTAGCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

257

Amino Acids

28.24

Weight (kDa)

9.46

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	99 - 140	4.4e-16	G-patch domain
G-patch_2	PF12656	102 - 143	3.6e-07	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	63, 183, 345
AclWI	GGATC	1 cut(s)	273
AcoI	YGGCCR	1 cut(s)	714
AcsI	RAATTY	1 cut(s)	727
AcyI	GRCGYC	1 cut(s)	454
AfaI	GTAC	2 cut(s)	571, 649
AfiI	CCNNNNNNNGG	3 cut(s)	396, 633, 704
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	2 cut(s)	386, 739
AhlI	ACTAGT	1 cut(s)	566
AjnI	CCWGG	1 cut(s)	752
AluBI	AGCT	3 cut(s)	214, 445, 767
AluI	AGCT	3 cut(s)	214, 445, 767
Alw26I	GTCTC	3 cut(s)	65, 138, 171
AlwI	GGATC	1 cut(s)	273
AoxI	GGCC	2 cut(s)	398, 714
ApeKI	GCWGC	4 cut(s)	186, 445, 555, 598
ApoI	RAATTY	1 cut(s)	727
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	399
AsuC2I	CCSGG	1 cut(s)	628
AsuHPI	GGTGA	2 cut(s)	518, 688
BanII	GRGCYC	2 cut(s)	228, 380
BbsI	GAAGAC	3 cut(s)	530, 647, 700
BbvI	GCAGC	4 cut(s)	173, 432, 567, 610
BccI	CCATC	4 cut(s)	322, 625, 673, 698
BceAI	ACGGC	4 cut(s)	166, 179, 203, 224
BcgI	CGANNNNNNTGC	2 cut(s)	178, 212
BciT130I	CCWGG	1 cut(s)	754
BcnI	CCSGG	1 cut(s)	628
BcoDI	GTCTC	3 cut(s)	65, 138, 171
BcuI	ACTAGT	1 cut(s)	566
BfaI	CTAG	1 cut(s)	567
BisI	GCNGC	9 cut(s)	154, 184, 187, 446, 449, 452, 556, 599, 624
BlsI	GCNGC	9 cut(s)	155, 185, 188, 447, 450, 453, 557, 600, 625
Bme1390I	CCNGG	2 cut(s)	628, 754
BmgT120I	GGNCC	1 cut(s)	399
BmiI	GGNNCC	2 cut(s)	157, 225
BmrFI	CCNGG	2 cut(s)	628, 754
BmsI	GCATC	3 cut(s)	102, 312, 768
BpiI	GAAGAC	3 cut(s)	530, 647, 700
BplI	GAGNNNNNCTC	2 cut(s)	682, 714
BpmI	CTGGAG	2 cut(s)	142, 736
BpuEI	CTTGAG	1 cut(s)	743
BpuMI	CCSGG	1 cut(s)	628
Bsa29I	ATCGAT	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	454
BsaI	GGTCTC	2 cut(s)	65, 171
BsaJI	CCNNGG	4 cut(s)	75, 181, 219, 477
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	3 cut(s)	396, 633, 704
Bse1I	ACTGG	1 cut(s)	618
BseBI	CCWGG	1 cut(s)	754
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	4 cut(s)	75, 181, 219, 477
BseGI	GGATG	2 cut(s)	203, 636
BseLI	CCNNNNNNNGG	3 cut(s)	396, 633, 704
BseNI	ACTGG	1 cut(s)	618
BseRI	GAGGAG	2 cut(s)	103, 106
BseXI	GCAGC	4 cut(s)	173, 432, 567, 610
BsgI	GTGCAG	1 cut(s)	506
Bsh1236I	CGCG	3 cut(s)	63, 183, 345
BshFI	GGCC	2 cut(s)	400, 716
BshVI	ATCGAT	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	627
BslFI	GGGAC	2 cut(s)	441, 451
BslI	CCNNNNNNNGG	3 cut(s)	396, 633, 704
BsmAI	GTCTC	3 cut(s)	65, 138, 171
BsmFI	GGGAC	2 cut(s)	441, 451
BsnI	GGCC	2 cut(s)	400, 716
Bso31I	GGTCTC	2 cut(s)	65, 171
Bsp1286I	GDGCHC	2 cut(s)	228, 380
Bsp143I	GATC	3 cut(s)	22, 265, 514
BspANI	GGCC	2 cut(s)	400, 716
BspDI	ATCGAT	1 cut(s)	21
BspFNI	CGCG	3 cut(s)	63, 183, 345
BspLI	GGNNCC	2 cut(s)	157, 225
BspPI	GGATC	1 cut(s)	273
BspTNI	GGTCTC	2 cut(s)	65, 171
BsrI	ACTGG	1 cut(s)	618
BssECI	CCNNGG	4 cut(s)	75, 181, 219, 477
BssMI	GATC	3 cut(s)	22, 265, 514
BssNI	GRCGYC	1 cut(s)	454
BssT1I	CCWWGG	1 cut(s)	477
Bst2UI	CCWGG	1 cut(s)	754
Bst4CI	ACNGT	2 cut(s)	260, 574
BstACI	GRCGYC	1 cut(s)	454
BstC8I	GCNNGC	2 cut(s)	38, 216
BstDEI	CTNAG	2 cut(s)	441, 763
BstDSI	CCRYGG	2 cut(s)	181, 219
BstF5I	GGATG	2 cut(s)	203, 636
BstFNI	CGCG	3 cut(s)	63, 183, 345
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	3 cut(s)	25, 268, 517
BstMAI	GTCTC	3 cut(s)	65, 138, 171
BstMBI	GATC	3 cut(s)	22, 265, 514
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 351, 451, 595
BstNI	CCWGG	1 cut(s)	754
BstSCI	CCNGG	2 cut(s)	626, 752
BstUI	CGCG	3 cut(s)	63, 183, 345
BstV1I	GCAGC	4 cut(s)	173, 432, 567, 610
BstV2I	GAAGAC	3 cut(s)	530, 647, 700
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	400, 716
BsuTUI	ATCGAT	1 cut(s)	21
BtgI	CCRYGG	2 cut(s)	181, 219
BtsCI	GGATG	2 cut(s)	203, 636
BtsIMutI	CAGTG	2 cut(s)	579, 625
Cac8I	GCNNGC	2 cut(s)	38, 216
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	399
Cfr42I	CCGCGG	1 cut(s)	184
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	4 cut(s)	52, 69, 351, 443
Csp6I	GTAC	2 cut(s)	570, 648
CspCI	CAANNNNNGTGG	2 cut(s)	448, 483
CviAII	CATG	2 cut(s)	169, 310
CviQI	GTAC	2 cut(s)	570, 648
DdeI	CTNAG	2 cut(s)	441, 763
DpnI	GATC	3 cut(s)	24, 267, 516
DpnII	GATC	3 cut(s)	22, 265, 514
EaeI	YGGCCR	1 cut(s)	714
Eco130I	CCWWGG	1 cut(s)	477
Eco24I	GRGCYC	2 cut(s)	228, 380
Eco31I	GGTCTC	2 cut(s)	65, 171
EcoRII	CCWGG	1 cut(s)	752
EcoT14I	CCWWGG	1 cut(s)	477
EcoT38I	GRGCYC	2 cut(s)	228, 380
ErhI	CCWWGG	1 cut(s)	477
FaeI	CATG	2 cut(s)	172, 313
FaiI	YATR	6 cut(s)	170, 252, 311, 336, 689, 770
FaqI	GGGAC	2 cut(s)	441, 451
FatI	CATG	2 cut(s)	168, 309
FauI	CCCGC	1 cut(s)	244
Fnu4HI	GCNGC	9 cut(s)	154, 184, 187, 446, 449, 452, 556, 599, 624
FokI	GGATG	2 cut(s)	190, 643
FriOI	GRGCYC	2 cut(s)	228, 380
Fsp4HI	GCNGC	9 cut(s)	154, 184, 187, 446, 449, 452, 556, 599, 624
FspBI	CTAG	1 cut(s)	567
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	9 cut(s)	154, 184, 187, 446, 449, 452, 556, 599, 624
GsuI	CTGGAG	2 cut(s)	142, 736
HaeIII	GGCC	2 cut(s)	400, 716
HapII	CCGG	1 cut(s)	627
HgaI	GACGC	4 cut(s)	52, 69, 351, 443
HhaI	GCGC	1 cut(s)	42
Hin1I	GRCGYC	1 cut(s)	454
Hin1II	CATG	2 cut(s)	172, 313
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	2 cut(s)	348, 708
HpaII	CCGG	1 cut(s)	627
HphI	GGTGA	2 cut(s)	518, 688
Hpy188I	TCNGA	5 cut(s)	16, 59, 79, 121, 270
Hpy188III	TCNNGA	3 cut(s)	159, 286, 701
Hpy99I	CGWCG	5 cut(s)	63, 68, 134, 137, 200
HpyAV	CCTTC	4 cut(s)	74, 359, 404, 572
HpyCH4III	ACNGT	2 cut(s)	260, 574
HpyCH4V	TGCA	3 cut(s)	189, 487, 759
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 351, 451, 595
HpyF3I	CTNAG	2 cut(s)	441, 763
Hsp92I	GRCGYC	1 cut(s)	454
Hsp92II	CATG	2 cut(s)	172, 313
HspAI	GCGC	1 cut(s)	40
KspI	CCGCGG	1 cut(s)	184
Kzo9I	GATC	3 cut(s)	22, 265, 514
LmnI	GCTCC	2 cut(s)	161, 223
LpnPI	CCDG	7 cut(s)	172, 244, 631, 640, 653, 739, 766
Lsp1109I	GCAGC	4 cut(s)	173, 432, 567, 610
LweI	GCATC	3 cut(s)	102, 312, 768
MaeI	CTAG	1 cut(s)	567
MaeIII	GTNAC	1 cut(s)	506
MalI	GATC	3 cut(s)	24, 267, 516
MboI	GATC	3 cut(s)	22, 265, 514
MboII	GAAGA	6 cut(s)	88, 337, 535, 649, 652, 705
MfeI	CAATTG	1 cut(s)	381
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	2 cut(s)	228, 380
MluCI	AATT	4 cut(s)	381, 392, 612, 727
MluI	ACGCGT	1 cut(s)	61
MlyI	GAGTC	1 cut(s)	342
MmeI	TCCRAC	2 cut(s)	82, 144
MslI	CAYNNNNRTG	1 cut(s)	308
MspA1I	CMGCKG	1 cut(s)	183
MspI	CCGG	1 cut(s)	627
MspR9I	CCNGG	2 cut(s)	628, 754
MunI	CAATTG	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	754
MvnI	CGCG	3 cut(s)	63, 183, 345
MwoI	GCNNNNNNNGC	4 cut(s)	48, 351, 451, 595
NciI	CCSGG	1 cut(s)	628
NdeII	GATC	3 cut(s)	22, 265, 514
NlaIII	CATG	2 cut(s)	172, 313
NlaIV	GGNNCC	2 cut(s)	157, 225
NmeAIII	GCCGAG	1 cut(s)	330
NmuCI	GTSAC	1 cut(s)	506
PcsI	WCGNNNNNNNCGW	2 cut(s)	172, 357
PfeI	GAWTC	1 cut(s)	708
PkrI	GCNGC	9 cut(s)	155, 185, 188, 447, 450, 453, 557, 600, 625
PleI	GAGTC	1 cut(s)	342
PpsI	GAGTC	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	752
PspGI	CCWGG	1 cut(s)	752
PspN4I	GGNNCC	2 cut(s)	157, 225
PspPI	GGNCC	1 cut(s)	399
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	2 cut(s)	571, 649
RsaNI	GTAC	2 cut(s)	570, 648
RseI	CAYNNNNRTG	1 cut(s)	308
SacII	CCGCGG	1 cut(s)	184
SatI	GCNGC	9 cut(s)	154, 184, 187, 446, 449, 452, 556, 599, 624
Sau3AI	GATC	3 cut(s)	22, 265, 514
Sau96I	GGNCC	1 cut(s)	399
SchI	GAGTC	1 cut(s)	342
ScrFI	CCNGG	2 cut(s)	628, 754
SduI	GDGCHC	2 cut(s)	228, 380
SfaNI	GCATC	3 cut(s)	102, 312, 768
Sfr303I	CCGCGG	1 cut(s)	184
SgrBI	CCGCGG	1 cut(s)	184
SmiMI	CAYNNNNRTG	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	722
SmoI	CTYRAG	1 cut(s)	722
SpeI	ACTAGT	1 cut(s)	566
Sse9I	AATT	4 cut(s)	381, 392, 612, 727
SspI	AATATT	1 cut(s)	274
SspMI	CTAG	1 cut(s)	567
StyD4I	CCNGG	2 cut(s)	626, 752
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	2 cut(s)	260, 574
TaqI	TCGA	3 cut(s)	21, 285, 660
TasI	AATT	4 cut(s)	381, 392, 612, 727
TatI	WGTACW	2 cut(s)	569, 647
TauI	GCSGC	5 cut(s)	156, 186, 451, 454, 626
TfiI	GAWTC	1 cut(s)	708
TscAI	CASTG	2 cut(s)	579, 625
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	4 cut(s)	186, 445, 555, 598
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	4 cut(s)	192, 326, 338, 423
TspGWI	ACGGA	2 cut(s)	156, 354
TspRI	CASTG	2 cut(s)	579, 625
XapI	RAATTY	1 cut(s)	727
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XspI	CTAG	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.