Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Forward (+)

25382055 .. 25382953

Gene Structure 899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013053

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGATTTGAGGTCTGAAATCGATCGCCTTTCTCGCAAGCGCAAGGAGAACAATCTCCGACGCGTCGTTGAGACCTCGAAAGGAAATCTCCGCATCTTCGCTCTCGCTTCCTCCTCCTCCTCCGACCACGACGACGACGATGGAGACAACGGTGGCTCCAGAAAACGCATGAGGCGAGACTGCGGCTGCAACGCCGTCGTTTCATCCACCCAGCTCGCTGTGGAGCCCACCAGACCCGTCAGGCCCGCCGTGAAACCCTATGACGACGGTGGGGATCTGAATATTGGGGAGTTCGAGAAACACACGAGGGGCATCGGCATGAAATTGCTGATGAAGATGGGATATAACGGACGTGGACTCGGCAAAAACGAGGAAGGTATTGTGATCCCAATTGAAGCCGAATTGAGGCCCAAAAATGAAGGTCTTGGTTTTGATTACAAGGAGGGGGCTAAGCTGCGGCGGCGGGCCACATTGTTTGTGAAAGCCAAGGTGGTGCAGAAAAGTGTGGCTCCTGGTGACGAACAGGCTCCTGGTGACGAACATCACAAGAAGAGCAAAACAGAAATAGCCAAAAAACCAAGCAGCCTAAACAGTAGTACAGTGAAAGAACACAAGCCCAACGAGCAGCCTAATGAGGCAATTACCAGTGCCGCCGGGATGGGGAAGAAGACGAGTTCAAAAGGTGTCGATTTGCTGGAAAAGGTGATGGCTGATATGAGAAGACCTCTTGATGGAATCTTGGCCGACTTTGAGAATTTAAGTTTGAAAGATACCAGCTCCAGTGCAAAAGGTCCGATATGTGGACTTCGAAATTTTGAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

275

Amino Acids

30.03

Weight (kDa)

9.37

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	102 - 143	9.3e-16	G-patch domain
G-patch_2	PF12656	105 - 146	9.2e-07	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	63
AciI	CCGC	7 cut(s)	91, 183, 246, 457, 460, 463, 651
AclWI	GGATC	2 cut(s)	282, 379
AcoI	YGGCCR	1 cut(s)	741
AcsI	RAATTY	2 cut(s)	754, 811
AfaI	GTAC	1 cut(s)	598
AfiI	CCNNNNNNNGG	4 cut(s)	405, 660, 731, 800
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	4 cut(s)	395, 678, 766, 818
AjiI	CACGTC	1 cut(s)	353
AjnI	CCWGG	2 cut(s)	511, 529
AluBI	AGCT	3 cut(s)	214, 454, 777
AluI	AGCT	3 cut(s)	214, 454, 777
Alw26I	GTCTC	3 cut(s)	65, 138, 171
AlwI	GGATC	2 cut(s)	282, 379
AoxI	GGCC	4 cut(s)	242, 407, 465, 741
ApeKI	GCWGC	4 cut(s)	186, 454, 582, 625
ApoI	RAATTY	2 cut(s)	754, 811
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	4 cut(s)	243, 408, 465, 791
AsuC2I	CCSGG	1 cut(s)	655
AsuHPI	GGTGA	3 cut(s)	527, 545, 715
AsuII	TTCGAA	1 cut(s)	808
AvaII	GGWCC	1 cut(s)	791
BanII	GRGCYC	1 cut(s)	228
BauI	CACGAG	1 cut(s)	304
BbsI	GAAGAC	2 cut(s)	674, 727
BbvI	GCAGC	4 cut(s)	173, 441, 594, 637
BccI	CCATC	5 cut(s)	134, 331, 652, 700, 725
BceAI	ACGGC	2 cut(s)	179, 233
BcgI	CGANNNNNNTGC	2 cut(s)	178, 212
BciT130I	CCWGG	2 cut(s)	513, 531
BcnI	CCSGG	1 cut(s)	655
BcoDI	GTCTC	3 cut(s)	65, 138, 171
BisI	GCNGC	8 cut(s)	184, 187, 455, 458, 461, 583, 626, 651
BlpI	GCTNAGC	1 cut(s)	450
BlsI	GCNGC	8 cut(s)	185, 188, 456, 459, 462, 584, 627, 652
Bme1390I	CCNGG	3 cut(s)	513, 531, 655
Bme18I	GGWCC	1 cut(s)	791
BmgBI	CACGTC	1 cut(s)	353
BmgT120I	GGNCC	4 cut(s)	243, 408, 465, 791
BmiI	GGNNCC	4 cut(s)	157, 225, 510, 528
BmrFI	CCNGG	3 cut(s)	513, 531, 655
BmsI	GCATC	2 cut(s)	102, 321
BpiI	GAAGAC	2 cut(s)	674, 727
BplI	GAGNNNNNCTC	2 cut(s)	709, 741
BpmI	CTGGAG	2 cut(s)	142, 763
Bpu1102I	GCTNAGC	1 cut(s)	450
Bpu14I	TTCGAA	1 cut(s)	808
BpuMI	CCSGG	1 cut(s)	655
Bsa29I	ATCGAT	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	486
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	4 cut(s)	405, 660, 731, 800
Bse1I	ACTGG	2 cut(s)	645, 780
BseBI	CCWGG	2 cut(s)	513, 531
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	2 cut(s)	203, 663
BseLI	CCNNNNNNNGG	4 cut(s)	405, 660, 731, 800
BseNI	ACTGG	2 cut(s)	645, 780
BseRI	GAGGAG	3 cut(s)	103, 106, 109
BseXI	GCAGC	4 cut(s)	173, 441, 594, 637
BseYI	CCCAGC	1 cut(s)	210
BsgI	GTGCAG	1 cut(s)	515
Bsh1236I	CGCG	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	4 cut(s)	244, 409, 467, 743
BshVI	ATCGAT	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	654
BslI	CCNNNNNNNGG	4 cut(s)	405, 660, 731, 800
BsmAI	GTCTC	3 cut(s)	65, 138, 171
BsnI	GGCC	4 cut(s)	244, 409, 467, 743
Bso31I	GGTCTC	1 cut(s)	65
Bsp119I	TTCGAA	1 cut(s)	808
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	3 cut(s)	22, 274, 384
Bsp1720I	GCTNAGC	1 cut(s)	450
BspACI	CCGC	7 cut(s)	91, 183, 246, 457, 460, 463, 651
BspANI	GGCC	4 cut(s)	244, 409, 467, 743
BspDI	ATCGAT	1 cut(s)	21
BspFNI	CGCG	1 cut(s)	63
BspLI	GGNNCC	4 cut(s)	157, 225, 510, 528
BspPI	GGATC	2 cut(s)	282, 379
BspQI	GCTCTTC	1 cut(s)	545
BspT104I	TTCGAA	1 cut(s)	808
BspTNI	GGTCTC	1 cut(s)	65
BsrI	ACTGG	2 cut(s)	645, 780
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	3 cut(s)	22, 274, 384
BssSI	CACGAG	1 cut(s)	304
BssT1I	CCWWGG	1 cut(s)	486
Bst2BI	CACGAG	1 cut(s)	304
Bst2UI	CCWGG	2 cut(s)	513, 531
Bst4CI	ACNGT	4 cut(s)	152, 269, 593, 601
Bst6I	CTCTTC	1 cut(s)	545
BstBI	TTCGAA	1 cut(s)	808
BstC8I	GCNNGC	4 cut(s)	38, 216, 246, 465
BstDEI	CTNAG	1 cut(s)	450
BstF5I	GGATG	2 cut(s)	203, 663
BstFNI	CGCG	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	3 cut(s)	25, 277, 387
BstMAI	GTCTC	3 cut(s)	65, 138, 171
BstMBI	GATC	3 cut(s)	22, 274, 384
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 460, 622
BstNI	CCWGG	2 cut(s)	513, 531
BstSCI	CCNGG	3 cut(s)	511, 529, 653
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	4 cut(s)	173, 441, 594, 637
BstV2I	GAAGAC	2 cut(s)	674, 727
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	4 cut(s)	244, 409, 467, 743
BsuTUI	ATCGAT	1 cut(s)	21
BtrI	CACGTC	1 cut(s)	353
BtsCI	GGATG	2 cut(s)	203, 663
BtsIMutI	CAGTG	3 cut(s)	606, 652, 787
Cac8I	GCNNGC	4 cut(s)	38, 216, 246, 465
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	4 cut(s)	243, 408, 465, 791
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	2 cut(s)	52, 69
Csp6I	GTAC	1 cut(s)	597
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	2 cut(s)	169, 319
CviQI	GTAC	1 cut(s)	597
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	3 cut(s)	24, 276, 386
DpnII	GATC	3 cut(s)	22, 274, 384
EaeI	YGGCCR	1 cut(s)	741
Eam1104I	CTCTTC	1 cut(s)	545
EarI	CTCTTC	1 cut(s)	545
Eco130I	CCWWGG	1 cut(s)	486
Eco24I	GRGCYC	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	791
EcoRII	CCWGG	2 cut(s)	511, 529
EcoT14I	CCWWGG	1 cut(s)	486
EcoT38I	GRGCYC	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	2 cut(s)	172, 322
FaiI	YATR	6 cut(s)	170, 261, 320, 345, 716, 799
FatI	CATG	2 cut(s)	168, 318
FauI	CCCGC	2 cut(s)	253, 456
Fnu4HI	GCNGC	8 cut(s)	184, 187, 455, 458, 461, 583, 626, 651
FokI	GGATG	2 cut(s)	190, 670
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	8 cut(s)	184, 187, 455, 458, 461, 583, 626, 651
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	8 cut(s)	184, 187, 455, 458, 461, 583, 626, 651
GsaI	CCCAGC	1 cut(s)	214
GsuI	CTGGAG	2 cut(s)	142, 763
HaeIII	GGCC	4 cut(s)	244, 409, 467, 743
HapII	CCGG	1 cut(s)	654
HgaI	GACGC	2 cut(s)	52, 69
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	172, 322
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	2 cut(s)	357, 735
HpaII	CCGG	1 cut(s)	654
HphI	GGTGA	3 cut(s)	527, 545, 715
Hpy166II	GTNNAC	2 cut(s)	356, 803
Hpy188I	TCNGA	5 cut(s)	16, 59, 124, 279, 795
Hpy188III	TCNNGA	3 cut(s)	159, 295, 728
Hpy8I	GTNNAC	2 cut(s)	356, 803
Hpy99I	CGWCG	7 cut(s)	63, 68, 134, 137, 140, 200, 269
HpyAV	CCTTC	2 cut(s)	368, 413
HpyCH4III	ACNGT	4 cut(s)	152, 269, 593, 601
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	3 cut(s)	189, 496, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 460, 622
HpyF3I	CTNAG	1 cut(s)	450
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	2 cut(s)	172, 322
HspAI	GCGC	1 cut(s)	40
Kzo9I	GATC	3 cut(s)	22, 274, 384
LguI	GCTCTTC	1 cut(s)	545
LmnI	GCTCC	5 cut(s)	161, 223, 514, 532, 782
Lsp1109I	GCAGC	4 cut(s)	173, 441, 594, 637
LweI	GCATC	2 cut(s)	102, 321
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	2 cut(s)	515, 533
MalI	GATC	3 cut(s)	24, 276, 386
MboI	GATC	3 cut(s)	22, 274, 384
MboII	GAAGA	6 cut(s)	88, 346, 562, 676, 679, 732
MfeI	CAATTG	1 cut(s)	390
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	6 cut(s)	323, 390, 401, 639, 754, 811
MluI	ACGCGT	1 cut(s)	61
MlyI	GAGTC	1 cut(s)	351
MmeI	TCCRAC	2 cut(s)	82, 147
MseI	TTAA	1 cut(s)	758
MslI	CAYNNNNRTG	1 cut(s)	317
MspI	CCGG	1 cut(s)	654
MspR9I	CCNGG	3 cut(s)	513, 531, 655
MunI	CAATTG	1 cut(s)	390
MvaI	CCWGG	2 cut(s)	513, 531
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	3 cut(s)	33, 460, 622
NciI	CCSGG	1 cut(s)	655
NdeII	GATC	3 cut(s)	22, 274, 384
NlaIII	CATG	2 cut(s)	172, 322
NlaIV	GGNNCC	4 cut(s)	157, 225, 510, 528
NmeAIII	GCCGAG	1 cut(s)	339
NmuCI	GTSAC	2 cut(s)	515, 533
NspV	TTCGAA	1 cut(s)	808
PciSI	GCTCTTC	1 cut(s)	545
PcsI	WCGNNNNNNNCGW	3 cut(s)	135, 172, 366
PfeI	GAWTC	1 cut(s)	735
PkrI	GCNGC	8 cut(s)	185, 188, 456, 459, 462, 584, 627, 652
Ple19I	CGATCG	1 cut(s)	25
PleI	GAGTC	1 cut(s)	351
PpsI	GAGTC	1 cut(s)	351
Psp6I	CCWGG	2 cut(s)	511, 529
PspFI	CCCAGC	1 cut(s)	210
PspGI	CCWGG	2 cut(s)	511, 529
PspN4I	GGNNCC	4 cut(s)	157, 225, 510, 528
PspPI	GGNCC	4 cut(s)	243, 408, 465, 791
PsuI	RGATCY	1 cut(s)	274
PvuI	CGATCG	1 cut(s)	25
RsaI	GTAC	1 cut(s)	598
RsaNI	GTAC	1 cut(s)	597
RseI	CAYNNNNRTG	1 cut(s)	317
SapI	GCTCTTC	1 cut(s)	545
SaqAI	TTAA	1 cut(s)	758
SatI	GCNGC	8 cut(s)	184, 187, 455, 458, 461, 583, 626, 651
Sau3AI	GATC	3 cut(s)	22, 274, 384
Sau96I	GGNCC	4 cut(s)	243, 408, 465, 791
SchI	GAGTC	1 cut(s)	351
ScrFI	CCNGG	3 cut(s)	513, 531, 655
SduI	GDGCHC	1 cut(s)	228
SfaNI	GCATC	2 cut(s)	102, 321
SfuI	TTCGAA	1 cut(s)	808
SinI	GGWCC	1 cut(s)	791
SmiMI	CAYNNNNRTG	1 cut(s)	317
Sse9I	AATT	6 cut(s)	323, 390, 401, 639, 754, 811
SsiI	CCGC	7 cut(s)	91, 183, 246, 457, 460, 463, 651
SspI	AATATT	1 cut(s)	283
StyD4I	CCNGG	3 cut(s)	511, 529, 653
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	4 cut(s)	152, 269, 593, 601
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	5 cut(s)	21, 77, 294, 687, 808
TasI	AATT	6 cut(s)	323, 390, 401, 639, 754, 811
TatI	WGTACW	1 cut(s)	596
TauI	GCSGC	4 cut(s)	186, 460, 463, 653
TfiI	GAWTC	1 cut(s)	735
Tru1I	TTAA	1 cut(s)	758
Tru9I	TTAA	1 cut(s)	758
TscAI	CASTG	3 cut(s)	606, 652, 787
TseFI	GTSAC	2 cut(s)	515, 533
TseI	GCWGC	4 cut(s)	186, 454, 582, 625
Tsp45I	GTSAC	2 cut(s)	515, 533
TspDTI	ATGAA	4 cut(s)	192, 335, 347, 432
TspGWI	ACGGA	1 cut(s)	363
TspRI	CASTG	3 cut(s)	606, 652, 787
VpaK11BI	GGWCC	1 cut(s)	791
XapI	RAATTY	2 cut(s)	754, 811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.