Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Reverse (-)

36829204 .. 36829824

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG185800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAGGCGAGACCGCGGCTGCAACGCCGTCGTTTCATCCACCAAGCTCGCCGCGGAGCCCACCAGGCCCGTCAGATCCGCCGTGAAACCCTATGACGACGGTGGGGATCTGAATATTGGGGAGTTCGAGAAACACACGAGGGGCATCGGCATGAAATTGCAGATGAAGATGGGCTATAACGGACGTGGACTCGGCAAAAACGAGGAAGGTATTGAAGCCGAATTGAGGTCCAAAAATGAAGGTCTTGGTTTTGATTACAAGCAGGGGACTAAGCTGCGGCGGCGGCCCACATCGTTTGTGAAAGCCAAGGTGGTGCACAAAACTGTCGCTGCTGGTGACAATGATCACAAGAAGAGCAAAACAGAAATAACCAAAAAACCAAGCAGCCTAGACACTAGTACAGTGGAAGAACCCAACCCCAACGAGCAGCCTAATGAGGCAATTACCAGTGCCGCCGCCACCGGCATGGAGAAGAAGACGACTACCAAAGGTGTCGATTTGTTGGGAAAGGTGATGGCTGATATGAGAAGACCTCTTGATGGAATCTTGGCCGACTTTGAGAACTTGAGTTTGAAAGCTACCAGCTCCACGTGCATCTTAGCTATGTACTCTACGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

206

Amino Acids

22.52

Weight (kDa)

9.43

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	46 - 83	4e-07	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	15, 53
AclWI	GGATC	2 cut(s)	69, 114
AcoI	YGGCCR	1 cut(s)	549
AcvI	CACGTG	1 cut(s)	591
AfaI	GTAC	2 cut(s)	400, 608
AfiI	CCNNNNNNNGG	2 cut(s)	225, 539
AgsI	TTSAA	2 cut(s)	215, 574
AhlI	ACTAGT	1 cut(s)	395
AjiI	CACGTC	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	5 cut(s)	46, 274, 578, 585, 602
AluI	AGCT	5 cut(s)	46, 274, 578, 585, 602
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	3
Alw44I	GTGCAC	1 cut(s)	314
AlwI	GGATC	2 cut(s)	69, 114
AoxI	GGCC	3 cut(s)	65, 284, 549
ApaLI	GTGCAC	1 cut(s)	314
ApeKI	GCWGC	5 cut(s)	18, 274, 329, 384, 427
AspS9I	GGNCC	3 cut(s)	66, 228, 285
AsuHPI	GGTGA	2 cut(s)	347, 523
AvaII	GGWCC	1 cut(s)	228
BaeGI	GKGCMC	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	60
BauI	CACGAG	1 cut(s)	136
BbrPI	CACGTG	1 cut(s)	591
BbsI	GAAGAC	2 cut(s)	482, 535
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	5 cut(s)	5, 261, 316, 396, 439
BccI	CCATC	3 cut(s)	163, 508, 533
BceAI	ACGGC	2 cut(s)	11, 65
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BciT130I	CCWGG	1 cut(s)	64
BclI	TGATCA	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	3
BcuI	ACTAGT	1 cut(s)	395
BfaI	CTAG	2 cut(s)	389, 396
BglI	GCCNNNNNGGC	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	228
BmgBI	CACGTC	1 cut(s)	185
BmgT120I	GGNCC	3 cut(s)	66, 228, 285
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	2 cut(s)	153, 603
BpiI	GAAGAC	2 cut(s)	482, 535
BplI	GAGNNNNNCTC	2 cut(s)	517, 549
BpuEI	CTTGAG	1 cut(s)	586
BsaAI	YACGTR	2 cut(s)	591, 615
BsaI	GGTCTC	1 cut(s)	3
BsaJI	CCNNGG	3 cut(s)	13, 51, 306
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 539
Bse118I	RCCGGY	1 cut(s)	461
Bse1I	ACTGG	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	3 cut(s)	13, 51, 306
BseGI	GGATG	1 cut(s)	35
BseLI	CCNNNNNNNGG	2 cut(s)	225, 539
BseNI	ACTGG	1 cut(s)	447
BseSI	GKGCMC	1 cut(s)	318
BseXI	GCAGC	5 cut(s)	5, 261, 316, 396, 439
Bsh1236I	CGCG	2 cut(s)	15, 53
BshFI	GGCC	3 cut(s)	67, 286, 551
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	462
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	2 cut(s)	225, 539
BsmAI	GTCTC	1 cut(s)	3
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	3 cut(s)	67, 286, 551
Bso31I	GGTCTC	1 cut(s)	3
Bsp1286I	GDGCHC	2 cut(s)	60, 318
Bsp143I	GATC	3 cut(s)	74, 106, 343
BspANI	GGCC	3 cut(s)	67, 286, 551
BspFNI	CGCG	2 cut(s)	15, 53
BspLI	GGNNCC	1 cut(s)	57
BspPI	GGATC	2 cut(s)	69, 114
BspQI	GCTCTTC	1 cut(s)	347
BspTNI	GGTCTC	1 cut(s)	3
BsrFI	RCCGGY	1 cut(s)	461
BsrI	ACTGG	1 cut(s)	447
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	3 cut(s)	13, 51, 306
BssMI	GATC	3 cut(s)	74, 106, 343
BssSI	CACGAG	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	3 cut(s)	101, 325, 403
Bst6I	CTCTTC	1 cut(s)	347
BstBAI	YACGTR	2 cut(s)	591, 615
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	2 cut(s)	270, 598
BstDSI	CCRYGG	2 cut(s)	13, 51
BstF5I	GGATG	1 cut(s)	35
BstFNI	CGCG	2 cut(s)	15, 53
BstKTI	GATC	3 cut(s)	77, 109, 346
BstMAI	GTCTC	1 cut(s)	3
BstMBI	GATC	3 cut(s)	74, 106, 343
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 280, 283, 591
BstNI	CCWGG	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	62
BstSLI	GKGCMC	1 cut(s)	318
BstUI	CGCG	2 cut(s)	15, 53
BstV1I	GCAGC	5 cut(s)	5, 261, 316, 396, 439
BstV2I	GAAGAC	2 cut(s)	482, 535
BstX2I	RGATCY	2 cut(s)	74, 106
BstXI	CCANNNNNNTGG	1 cut(s)	466
BstYI	RGATCY	2 cut(s)	74, 106
BsuRI	GGCC	3 cut(s)	67, 286, 551
BtgI	CCRYGG	2 cut(s)	13, 51
BtrI	CACGTC	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	35
BtsIMutI	CAGTG	2 cut(s)	408, 454
Cac8I	GCNNGC	1 cut(s)	48
Cfr10I	RCCGGY	1 cut(s)	461
Cfr13I	GGNCC	3 cut(s)	66, 228, 285
Cfr42I	CCGCGG	2 cut(s)	16, 54
Csp6I	GTAC	2 cut(s)	399, 607
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviAII	CATG	2 cut(s)	151, 466
CviQI	GTAC	2 cut(s)	399, 607
DdeI	CTNAG	2 cut(s)	270, 598
DpnI	GATC	3 cut(s)	76, 108, 345
DpnII	GATC	3 cut(s)	74, 106, 343
EaeI	YGGCCR	1 cut(s)	549
Eam1104I	CTCTTC	1 cut(s)	347
EarI	CTCTTC	1 cut(s)	347
EciI	GGCGGA	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	228
Eco72I	CACGTG	1 cut(s)	591
EcoRII	CCWGG	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	2 cut(s)	154, 469
FaiI	YATR	6 cut(s)	93, 152, 177, 467, 524, 605
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	2 cut(s)	150, 465
FbaI	TGATCA	1 cut(s)	343
FokI	GGATG	1 cut(s)	22
FriOI	GRGCYC	1 cut(s)	60
FspBI	CTAG	2 cut(s)	389, 396
HaeIII	GGCC	3 cut(s)	67, 286, 551
HapII	CCGG	1 cut(s)	462
Hin1II	CATG	2 cut(s)	154, 469
HinfI	GANTC	2 cut(s)	189, 543
HpaII	CCGG	1 cut(s)	462
HphI	GGTGA	2 cut(s)	347, 523
Hpy166II	GTNNAC	2 cut(s)	188, 316
Hpy188I	TCNGA	2 cut(s)	74, 111
Hpy188III	TCNNGA	2 cut(s)	127, 536
Hpy8I	GTNNAC	2 cut(s)	188, 316
Hpy99I	CGWCG	2 cut(s)	32, 101
HpyAV	CCTTC	2 cut(s)	200, 233
HpyCH4III	ACNGT	3 cut(s)	101, 325, 403
HpyCH4IV	ACGT	3 cut(s)	184, 590, 614
HpyCH4V	TGCA	4 cut(s)	21, 160, 316, 594
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 280, 283, 591
HpyF3I	CTNAG	2 cut(s)	270, 598
HpySE526I	ACGT	3 cut(s)	184, 590, 614
Hsp92II	CATG	2 cut(s)	154, 469
Ksp22I	TGATCA	1 cut(s)	343
KspI	CCGCGG	2 cut(s)	16, 54
Kzo9I	GATC	3 cut(s)	74, 106, 343
LguI	GCTCTTC	1 cut(s)	347
LmnI	GCTCC	2 cut(s)	55, 590
LpnPI	CCDG	7 cut(s)	49, 76, 248, 318, 460, 475, 595
Lsp1109I	GCAGC	5 cut(s)	5, 261, 316, 396, 439
LweI	GCATC	2 cut(s)	153, 603
MaeI	CTAG	2 cut(s)	389, 396
MaeII	ACGT	3 cut(s)	184, 590, 614
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	3 cut(s)	76, 108, 345
MboI	GATC	3 cut(s)	74, 106, 343
MboII	GAAGA	6 cut(s)	178, 364, 419, 484, 487, 540
MflI	RGATCY	2 cut(s)	74, 106
MhlI	GDGCHC	2 cut(s)	60, 318
MluCI	AATT	3 cut(s)	155, 221, 441
MlyI	GAGTC	1 cut(s)	183
MnlI	CCTC	5 cut(s)	132, 196, 219, 430, 543
MslI	CAYNNNNRTG	2 cut(s)	149, 464
MspA1I	CMGCKG	2 cut(s)	15, 53
MspI	CCGG	1 cut(s)	462
MspR9I	CCNGG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	64
MvnI	CGCG	2 cut(s)	15, 53
MwoI	GCNNNNNNNGC	4 cut(s)	64, 280, 283, 591
NdeII	GATC	3 cut(s)	74, 106, 343
NlaIII	CATG	2 cut(s)	154, 469
NlaIV	GGNNCC	1 cut(s)	57
NmeAIII	GCCGAG	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	335
PciSI	GCTCTTC	1 cut(s)	347
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	543
PleI	GAGTC	1 cut(s)	183
PmaCI	CACGTG	1 cut(s)	591
PmlI	CACGTG	1 cut(s)	591
PpsI	GAGTC	1 cut(s)	183
Ppu21I	YACGTR	2 cut(s)	591, 615
Psp6I	CCWGG	1 cut(s)	62
PspCI	CACGTG	1 cut(s)	591
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	3 cut(s)	66, 228, 285
PsuI	RGATCY	2 cut(s)	74, 106
RsaI	GTAC	2 cut(s)	400, 608
RsaNI	GTAC	2 cut(s)	399, 607
RseI	CAYNNNNRTG	2 cut(s)	149, 464
SacII	CCGCGG	2 cut(s)	16, 54
SapI	GCTCTTC	1 cut(s)	347
Sau3AI	GATC	3 cut(s)	74, 106, 343
Sau96I	GGNCC	3 cut(s)	66, 228, 285
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	2 cut(s)	60, 318
SfaNI	GCATC	2 cut(s)	153, 603
Sfr303I	CCGCGG	2 cut(s)	16, 54
SgrBI	CCGCGG	2 cut(s)	16, 54
SinI	GGWCC	1 cut(s)	228
SmiMI	CAYNNNNRTG	2 cut(s)	149, 464
SmlI	CTYRAG	1 cut(s)	565
SmoI	CTYRAG	1 cut(s)	565
SpeI	ACTAGT	1 cut(s)	395
Sse9I	AATT	3 cut(s)	155, 221, 441
SspI	AATATT	1 cut(s)	115
SspMI	CTAG	2 cut(s)	389, 396
StyD4I	CCNGG	1 cut(s)	62
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	3 cut(s)	101, 325, 403
TaiI	ACGT	3 cut(s)	187, 593, 617
TaqI	TCGA	2 cut(s)	126, 495
TasI	AATT	3 cut(s)	155, 221, 441
TatI	WGTACW	2 cut(s)	398, 606
TauI	GCSGC	7 cut(s)	18, 53, 280, 283, 286, 455, 458
TfiI	GAWTC	1 cut(s)	543
TscAI	CASTG	2 cut(s)	408, 454
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	5 cut(s)	18, 274, 329, 384, 427
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	4 cut(s)	24, 167, 179, 252
TspGWI	ACGGA	1 cut(s)	195
TspRI	CASTG	2 cut(s)	408, 454
VneI	GTGCAC	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	228
XspI	CTAG	2 cut(s)	389, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.