Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Reverse (-)

41869565 .. 41870811

Gene Structure 1247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG248700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGATTTGAGGTCTGAAATCGATCGCTGTTCTCGCAAGCGCAAGGAGAACAATCTCCGACGCGTCGTTGAGACCTCGGGAGGAAATCTCCGTATCTTCGCTCTCGCTTCCTCCTCCGACCACGACGACGACGACGGAGACACCGGCGGCTCCAGAAAACGCATGAGGCGAGACCGCGGCTGCAACGCCGTCGTTTCATCCACCAAGCTCGCCGTGGAGCCCACCAGACCCGTCAGGTCCGCCGTGAAACCCTATGACGACGGTGGGGATCTGAATATTGGGGAGTTCGAGAAACACACAAGGGGGATCGGCATGAAATTGCTGATGAAGATGGGCTATAATGGAGGAGGACTGGGGAAGAACGAGAAAGGTATTGTGAGCCCAATTGAAGCCGAATTGAGGCCCAAAAATAAAGGTCTTGGTTTTGATTACAAGGAGGGGGCTAAGCTGCGGCGGCGGACCACATTGTTTGTGAAAGCCAAGGTGGTGCAGAAAAGTGTGGCTCCTGGTGACGAACATCACAAGAAGAGCAAAACAGAAATAGCCAAAAAACCAAGCAGCCTAAACACTAGTACAGTGAAAGAACACAAGCCCAACGAGCAGCCTAATGAGGCAATTACCAGTGCCGCCGGGATGGGGAAGAAGACGAGTACAAAAGGTGTCGATTTGCTGGAAAAGGTGATGGCTGATATGAGAAGATCTCTTGATGGAATCTTGGCCGACTTTGAGAATTTAAGTTTGAAAGATACCAGCTCCAGATGCATCTTAGCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

258

Amino Acids

28.34

Weight (kDa)

9.74

Isoelectric Point (pI)

48.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	100 - 141	8.1e-16	G-patch domain
G-patch_2	PF12656	103 - 144	1.2e-06	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	63, 177
AciI	CCGC	8 cut(s)	147, 175, 177, 240, 451, 454, 457, 627
AclWI	GGATC	2 cut(s)	276, 314
AcoI	YGGCCR	1 cut(s)	717
AcsI	RAATTY	1 cut(s)	730
AfaI	GTAC	2 cut(s)	574, 652
AfiI	CCNNNNNNNGG	2 cut(s)	399, 636
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	2 cut(s)	389, 742
AhlI	ACTAGT	1 cut(s)	569
AjnI	CCWGG	1 cut(s)	505
AluBI	AGCT	4 cut(s)	208, 448, 753, 770
AluI	AGCT	4 cut(s)	208, 448, 753, 770
Alw26I	GTCTC	3 cut(s)	65, 132, 165
AlwI	GGATC	2 cut(s)	276, 314
Ama87I	CYCGRG	1 cut(s)	76
AoxI	GGCC	2 cut(s)	401, 717
ApeKI	GCWGC	4 cut(s)	180, 448, 558, 601
ApoI	RAATTY	1 cut(s)	730
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	3 cut(s)	237, 402, 459
AsuC2I	CCSGG	1 cut(s)	631
AsuHPI	GGTGA	2 cut(s)	521, 691
AvaI	CYCGRG	1 cut(s)	76
AvaII	GGWCC	2 cut(s)	237, 459
BanII	GRGCYC	2 cut(s)	222, 383
BbsI	GAAGAC	1 cut(s)	650
BbvI	GCAGC	4 cut(s)	167, 435, 570, 613
BccI	CCATC	4 cut(s)	325, 628, 676, 701
BceAI	ACGGC	3 cut(s)	173, 197, 227
BcgI	CGANNNNNNTGC	2 cut(s)	172, 206
BciT130I	CCWGG	1 cut(s)	507
BcnI	CCSGG	1 cut(s)	631
BcoDI	GTCTC	3 cut(s)	65, 132, 165
BcuI	ACTAGT	1 cut(s)	569
BfaI	CTAG	1 cut(s)	570
BglII	AGATCT	1 cut(s)	698
BisI	GCNGC	9 cut(s)	148, 178, 181, 449, 452, 455, 559, 602, 627
BlpI	GCTNAGC	1 cut(s)	444
BlsI	GCNGC	9 cut(s)	149, 179, 182, 450, 453, 456, 560, 603, 628
Bme1390I	CCNGG	2 cut(s)	507, 631
Bme18I	GGWCC	2 cut(s)	237, 459
BmeT110I	CYCGRG	1 cut(s)	76
BmgT120I	GGNCC	3 cut(s)	237, 402, 459
BmiI	GGNNCC	3 cut(s)	151, 219, 504
BmrFI	CCNGG	2 cut(s)	507, 631
BmrI	ACTGGG	1 cut(s)	362
BmsI	GCATC	2 cut(s)	749, 771
BmuI	ACTGGG	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	650
BplI	GAGNNNNNCTC	4 cut(s)	72, 104, 685, 717
BpmI	CTGGAG	2 cut(s)	136, 739
Bpu1102I	GCTNAGC	1 cut(s)	444
BpuMI	CCSGG	1 cut(s)	631
Bsa29I	ATCGAT	1 cut(s)	21
BsaI	GGTCTC	2 cut(s)	65, 165
BsaJI	CCNNGG	4 cut(s)	75, 175, 213, 480
Bsc4I	CCNNNNNNNGG	2 cut(s)	399, 636
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	2 cut(s)	357, 621
BseBI	CCWGG	1 cut(s)	507
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	4 cut(s)	75, 175, 213, 480
BseGI	GGATG	2 cut(s)	197, 639
BseLI	CCNNNNNNNGG	2 cut(s)	399, 636
BseNI	ACTGG	2 cut(s)	357, 621
BseRI	GAGGAG	2 cut(s)	103, 360
BseXI	GCAGC	4 cut(s)	167, 435, 570, 613
BsgI	GTGCAG	1 cut(s)	509
Bsh1236I	CGCG	2 cut(s)	63, 177
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	2 cut(s)	403, 719
BshVI	ATCGAT	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	76
BsiSI	CCGG	2 cut(s)	144, 630
BslI	CCNNNNNNNGG	2 cut(s)	399, 636
BsmAI	GTCTC	3 cut(s)	65, 132, 165
BsnI	GGCC	2 cut(s)	403, 719
Bso31I	GGTCTC	2 cut(s)	65, 165
BsoBI	CYCGRG	1 cut(s)	76
Bsp1286I	GDGCHC	2 cut(s)	222, 383
Bsp143I	GATC	4 cut(s)	22, 268, 306, 698
Bsp1720I	GCTNAGC	1 cut(s)	444
BspACI	CCGC	8 cut(s)	147, 175, 177, 240, 451, 454, 457, 627
BspANI	GGCC	2 cut(s)	403, 719
BspDI	ATCGAT	1 cut(s)	21
BspFNI	CGCG	2 cut(s)	63, 177
BspLI	GGNNCC	3 cut(s)	151, 219, 504
BspPI	GGATC	2 cut(s)	276, 314
BspQI	GCTCTTC	1 cut(s)	521
BspTNI	GGTCTC	2 cut(s)	65, 165
BsrFI	RCCGGY	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	357, 621
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	4 cut(s)	75, 175, 213, 480
BssMI	GATC	4 cut(s)	22, 268, 306, 698
BssT1I	CCWWGG	1 cut(s)	480
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	2 cut(s)	263, 577
Bst6I	CTCTTC	1 cut(s)	521
BstC8I	GCNNGC	2 cut(s)	38, 210
BstDEI	CTNAG	2 cut(s)	444, 766
BstDSI	CCRYGG	2 cut(s)	175, 213
BstF5I	GGATG	2 cut(s)	197, 639
BstFNI	CGCG	2 cut(s)	63, 177
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	4 cut(s)	25, 271, 309, 701
BstMAI	GTCTC	3 cut(s)	65, 132, 165
BstMBI	GATC	4 cut(s)	22, 268, 306, 698
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 454, 598, 759
BstNI	CCWGG	1 cut(s)	507
BstSCI	CCNGG	2 cut(s)	505, 629
BstUI	CGCG	2 cut(s)	63, 177
BstV1I	GCAGC	4 cut(s)	167, 435, 570, 613
BstV2I	GAAGAC	1 cut(s)	650
BstX2I	RGATCY	2 cut(s)	268, 698
BstYI	RGATCY	2 cut(s)	268, 698
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	403, 719
BsuTUI	ATCGAT	1 cut(s)	21
BtgI	CCRYGG	2 cut(s)	175, 213
BtsCI	GGATG	2 cut(s)	197, 639
BtsIMutI	CAGTG	2 cut(s)	582, 628
Cac8I	GCNNGC	2 cut(s)	38, 210
CfoI	GCGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	3 cut(s)	237, 402, 459
Cfr42I	CCGCGG	1 cut(s)	178
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	2 cut(s)	52, 69
Csp6I	GTAC	2 cut(s)	573, 651
CspCI	CAANNNNNGTGG	2 cut(s)	451, 486
CviAII	CATG	2 cut(s)	163, 313
CviQI	GTAC	2 cut(s)	573, 651
DdeI	CTNAG	2 cut(s)	444, 766
DpnI	GATC	4 cut(s)	24, 270, 308, 700
DpnII	GATC	4 cut(s)	22, 268, 306, 698
EaeI	YGGCCR	1 cut(s)	717
Eam1104I	CTCTTC	1 cut(s)	521
EarI	CTCTTC	1 cut(s)	521
EciI	GGCGGA	2 cut(s)	229, 472
Eco130I	CCWWGG	1 cut(s)	480
Eco24I	GRGCYC	2 cut(s)	222, 383
Eco31I	GGTCTC	2 cut(s)	65, 165
Eco47I	GGWCC	2 cut(s)	237, 459
Eco88I	CYCGRG	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	505
EcoT14I	CCWWGG	1 cut(s)	480
EcoT22I	ATGCAT	1 cut(s)	764
EcoT38I	GRGCYC	2 cut(s)	222, 383
ErhI	CCWWGG	1 cut(s)	480
FaeI	CATG	2 cut(s)	166, 316
FaiI	YATR	6 cut(s)	164, 255, 314, 339, 692, 773
FatI	CATG	2 cut(s)	162, 312
Fnu4HI	GCNGC	9 cut(s)	148, 178, 181, 449, 452, 455, 559, 602, 627
FokI	GGATG	2 cut(s)	184, 646
FriOI	GRGCYC	2 cut(s)	222, 383
Fsp4HI	GCNGC	9 cut(s)	148, 178, 181, 449, 452, 455, 559, 602, 627
FspBI	CTAG	1 cut(s)	570
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	9 cut(s)	148, 178, 181, 449, 452, 455, 559, 602, 627
GsuI	CTGGAG	2 cut(s)	136, 739
HaeIII	GGCC	2 cut(s)	403, 719
HapII	CCGG	2 cut(s)	144, 630
HgaI	GACGC	2 cut(s)	52, 69
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	166, 316
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	1 cut(s)	711
HpaII	CCGG	2 cut(s)	144, 630
HphI	GGTGA	2 cut(s)	521, 691
Hpy188I	TCNGA	4 cut(s)	16, 59, 118, 273
Hpy188III	TCNNGA	5 cut(s)	78, 153, 289, 704, 756
Hpy99I	CGWCG	8 cut(s)	63, 68, 128, 131, 134, 137, 194, 263
HpyCH4III	ACNGT	2 cut(s)	263, 577
HpyCH4V	TGCA	3 cut(s)	183, 490, 762
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 454, 598, 759
HpyF3I	CTNAG	2 cut(s)	444, 766
Hsp92II	CATG	2 cut(s)	166, 316
HspAI	GCGC	1 cut(s)	40
KspI	CCGCGG	1 cut(s)	178
Kzo9I	GATC	4 cut(s)	22, 268, 306, 698
LguI	GCTCTTC	1 cut(s)	521
LmnI	GCTCC	4 cut(s)	155, 217, 508, 758
Lsp1109I	GCAGC	4 cut(s)	167, 435, 570, 613
LweI	GCATC	2 cut(s)	749, 771
MaeI	CTAG	1 cut(s)	570
MaeIII	GTNAC	1 cut(s)	509
MalI	GATC	4 cut(s)	24, 270, 308, 700
MboI	GATC	4 cut(s)	22, 268, 306, 698
MboII	GAAGA	7 cut(s)	88, 340, 370, 538, 652, 655, 708
MfeI	CAATTG	1 cut(s)	384
MflI	RGATCY	2 cut(s)	268, 698
MhlI	GDGCHC	2 cut(s)	222, 383
MluCI	AATT	5 cut(s)	317, 384, 395, 615, 730
MluI	ACGCGT	1 cut(s)	61
MmeI	TCCRAC	2 cut(s)	82, 141
Mph1103I	ATGCAT	1 cut(s)	764
MseI	TTAA	1 cut(s)	734
MspA1I	CMGCKG	1 cut(s)	177
MspI	CCGG	2 cut(s)	144, 630
MspR9I	CCNGG	2 cut(s)	507, 631
MunI	CAATTG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	507
MvnI	CGCG	2 cut(s)	63, 177
MwoI	GCNNNNNNNGC	4 cut(s)	33, 454, 598, 759
NciI	CCSGG	1 cut(s)	631
NdeII	GATC	4 cut(s)	22, 268, 306, 698
NlaIII	CATG	2 cut(s)	166, 316
NlaIV	GGNNCC	3 cut(s)	151, 219, 504
NmuCI	GTSAC	1 cut(s)	509
NsiI	ATGCAT	1 cut(s)	764
PciSI	GCTCTTC	1 cut(s)	521
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 166
PfeI	GAWTC	1 cut(s)	711
PkrI	GCNGC	9 cut(s)	149, 179, 182, 450, 453, 456, 560, 603, 628
Ple19I	CGATCG	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	3 cut(s)	151, 219, 504
PspPI	GGNCC	3 cut(s)	237, 402, 459
PsuI	RGATCY	2 cut(s)	268, 698
PvuI	CGATCG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	574, 652
RsaNI	GTAC	2 cut(s)	573, 651
SacII	CCGCGG	1 cut(s)	178
SapI	GCTCTTC	1 cut(s)	521
SaqAI	TTAA	1 cut(s)	734
SatI	GCNGC	9 cut(s)	148, 178, 181, 449, 452, 455, 559, 602, 627
Sau3AI	GATC	4 cut(s)	22, 268, 306, 698
Sau96I	GGNCC	3 cut(s)	237, 402, 459
ScrFI	CCNGG	2 cut(s)	507, 631
SduI	GDGCHC	2 cut(s)	222, 383
SfaNI	GCATC	2 cut(s)	749, 771
Sfr303I	CCGCGG	1 cut(s)	178
SgrAI	CRCCGGYG	1 cut(s)	143
SgrBI	CCGCGG	1 cut(s)	178
SinI	GGWCC	2 cut(s)	237, 459
SpeI	ACTAGT	1 cut(s)	569
Sse9I	AATT	5 cut(s)	317, 384, 395, 615, 730
SsiI	CCGC	8 cut(s)	147, 175, 177, 240, 451, 454, 457, 627
SspI	AATATT	1 cut(s)	277
SspMI	CTAG	1 cut(s)	570
StyD4I	CCNGG	2 cut(s)	505, 629
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	2 cut(s)	263, 577
TaqI	TCGA	3 cut(s)	21, 288, 663
TasI	AATT	5 cut(s)	317, 384, 395, 615, 730
TatI	WGTACW	2 cut(s)	572, 650
TauI	GCSGC	5 cut(s)	150, 180, 454, 457, 629
TfiI	GAWTC	1 cut(s)	711
Tru1I	TTAA	1 cut(s)	734
Tru9I	TTAA	1 cut(s)	734
TscAI	CASTG	2 cut(s)	582, 628
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	4 cut(s)	180, 448, 558, 601
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	3 cut(s)	186, 329, 341
TspGWI	ACGGA	2 cut(s)	80, 150
TspRI	CASTG	2 cut(s)	582, 628
VpaK11BI	GGWCC	2 cut(s)	237, 459
XapI	RAATTY	1 cut(s)	730
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XspI	CTAG	1 cut(s)	570
Zsp2I	ATGCAT	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.