Rmu_sc0001192.1_g000015

tuftelin-interacting protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001192.1
Physical Location & Seq
Forward (+)
55829 .. 56602
774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001192.1_g000015.1.cds

Sequence Viewer

Length: 774 bp
atggatttgagatctgaaatcgatcgcctttctcgcaagcgcaaggagaacaatctccgacgcgtcgttgagacctcggaaggaaatctccgcatcttcgttctcgctttctcctcctccgcccacgacgtcgacgaaggagacaccggcggctccagaaaacgcatgaggcgagaccgcggctgcaacgccgtcgtttcatccaccaagctcgccgcggagcccaccaggcccgtcagatccgccgtgaaaccctatgacgacggtggggatctgaatattggggagttcgagaaacacacgaggggcatcggcatgaaattgcagatgaagatgggctataacggacgtggactcggcaaaaacgaggaaggtattgaagccgaattgaggtccaaaaatgaaggtcttggttttgattacaagcaggggactaagctgcggcggcggcccacatcgtttgtgaaagccaaggtggtgcacaaaagtgtcgctgctggtgacaatgatcacaagaagagcaaaacagaaataaccaaaaaaccaagcagcctagacactagtacagtggaagaacacaagcccaacgagcagcctaatgaggcaattaccagtgccgccgccaccgggatggagaagaagacgattaccaaaggtgtcgatttgctgggaaaggtgatggctgatatgagaagacctcttgatggaatcttggccgactttgagaacttgagtttgaaaggtaccagctccacgtgcatcttagctatgtag

Protein Analysis

257

Amino Acids

28.31

Weight (kDa)

9.6

Isoelectric Point (pI)

49.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 132
Acc65I GGTACC 1 cut(s) 743
AccB1I GGYRCC 1 cut(s) 743
AccI GTMKAC 1 cut(s) 132
AccII CGCG 3 cut(s) 63, 180, 218
AclWI GGATC 2 cut(s) 234, 279
AcoI YGGCCR 1 cut(s) 714
AcvI CACGTG 1 cut(s) 756
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 2 cut(s) 565, 745
AfiI CCNNNNNNNGG 3 cut(s) 390, 627, 704
AflIII ACRYGT 1 cut(s) 61
AgsI TTSAA 2 cut(s) 380, 739
AhlI ACTAGT 1 cut(s) 560
AjiI CACGTC 1 cut(s) 350
AjnI CCWGG 1 cut(s) 227
AleI CACNNNNGTG 1 cut(s) 486
AluBI AGCT 4 cut(s) 211, 439, 750, 767
AluI AGCT 4 cut(s) 211, 439, 750, 767
Alw21I GWGCWC 1 cut(s) 483
Alw26I GTCTC 3 cut(s) 65, 135, 168
Alw44I GTGCAC 1 cut(s) 479
AlwI GGATC 2 cut(s) 234, 279
AoxI GGCC 3 cut(s) 230, 449, 714
ApaLI GTGCAC 1 cut(s) 479
ApeKI GCWGC 5 cut(s) 183, 439, 494, 549, 592
Asp718I GGTACC 1 cut(s) 743
AspLEI GCGC 1 cut(s) 42
AspS9I GGNCC 3 cut(s) 231, 393, 450
AsuC2I CCSGG 1 cut(s) 628
AsuHPI GGTGA 2 cut(s) 512, 688
AvaII GGWCC 1 cut(s) 393
BaeGI GKGCMC 1 cut(s) 483
BanI GGYRCC 1 cut(s) 743
BanII GRGCYC 1 cut(s) 225
BauI CACGAG 1 cut(s) 301
BbrPI CACGTG 1 cut(s) 756
BbsI GAAGAC 2 cut(s) 647, 700
Bbv12I GWGCWC 1 cut(s) 483
BbvI GCAGC 5 cut(s) 170, 426, 481, 561, 604
BccI CCATC 4 cut(s) 328, 625, 673, 698
BceAI ACGGC 2 cut(s) 176, 230
BcgI CGANNNNNNTGC 2 cut(s) 175, 209
BciT130I CCWGG 1 cut(s) 229
BclI TGATCA 1 cut(s) 508
BcnI CCSGG 1 cut(s) 628
BcoDI GTCTC 3 cut(s) 65, 135, 168
BcuI ACTAGT 1 cut(s) 560
BfaI CTAG 2 cut(s) 554, 561
BglI GCCNNNNNGGC 1 cut(s) 229
BglII AGATCT 1 cut(s) 11
Bme1390I CCNGG 2 cut(s) 229, 628
Bme18I GGWCC 1 cut(s) 393
BmgBI CACGTC 1 cut(s) 350
BmgT120I GGNCC 3 cut(s) 231, 393, 450
BmiI GGNNCC 3 cut(s) 154, 222, 745
BmrFI CCNGG 2 cut(s) 229, 628
BmsI GCATC 3 cut(s) 102, 318, 768
BpiI GAAGAC 2 cut(s) 647, 700
BplI GAGNNNNNCTC 2 cut(s) 682, 714
BpmI CTGGAG 1 cut(s) 139
BpuEI CTTGAG 1 cut(s) 751
BpuMI CCSGG 1 cut(s) 628
Bsa29I ATCGAT 1 cut(s) 21
BsaAI YACGTR 1 cut(s) 756
BsaHI GRCGYC 1 cut(s) 129
BsaI GGTCTC 2 cut(s) 65, 168
BsaJI CCNNGG 4 cut(s) 75, 178, 216, 471
Bsc4I CCNNNNNNNGG 3 cut(s) 390, 627, 704
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 612
BseBI CCWGG 1 cut(s) 229
BseCI ATCGAT 1 cut(s) 21
BseDI CCNNGG 4 cut(s) 75, 178, 216, 471
BseGI GGATG 2 cut(s) 200, 636
BseLI CCNNNNNNNGG 3 cut(s) 390, 627, 704
BseNI ACTGG 1 cut(s) 612
BseRI GAGGAG 2 cut(s) 103, 106
BseSI GKGCMC 1 cut(s) 483
BseXI GCAGC 5 cut(s) 170, 426, 481, 561, 604
BseYI CCCAGC 1 cut(s) 667
Bsh1236I CGCG 3 cut(s) 63, 180, 218
Bsh1285I CGRYCG 1 cut(s) 25
BshFI GGCC 3 cut(s) 232, 451, 716
BshNI GGYRCC 1 cut(s) 743
BshVI ATCGAT 1 cut(s) 21
BsiEI CGRYCG 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 483
BsiSI CCGG 2 cut(s) 147, 627
BslFI GGGAC 1 cut(s) 445
BslI CCNNNNNNNGG 3 cut(s) 390, 627, 704
BsmAI GTCTC 3 cut(s) 65, 135, 168
BsmFI GGGAC 1 cut(s) 445
BsnI GGCC 3 cut(s) 232, 451, 716
Bso31I GGTCTC 2 cut(s) 65, 168
Bsp1286I GDGCHC 2 cut(s) 225, 483
Bsp143I GATC 5 cut(s) 11, 22, 239, 271, 508
BspANI GGCC 3 cut(s) 232, 451, 716
BspDI ATCGAT 1 cut(s) 21
BspFNI CGCG 3 cut(s) 63, 180, 218
BspLI GGNNCC 3 cut(s) 154, 222, 745
BspPI GGATC 2 cut(s) 234, 279
BspQI GCTCTTC 1 cut(s) 512
BspT107I GGYRCC 1 cut(s) 743
BspTNI GGTCTC 2 cut(s) 65, 168
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 1 cut(s) 612
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 4 cut(s) 75, 178, 216, 471
BssMI GATC 5 cut(s) 11, 22, 239, 271, 508
BssNI GRCGYC 1 cut(s) 129
BssSI CACGAG 1 cut(s) 301
BssT1I CCWWGG 1 cut(s) 471
Bst2BI CACGAG 1 cut(s) 301
Bst2UI CCWGG 1 cut(s) 229
Bst4CI ACNGT 2 cut(s) 266, 568
Bst6I CTCTTC 1 cut(s) 512
BstACI GRCGYC 1 cut(s) 129
BstBAI YACGTR 1 cut(s) 756
BstC8I GCNNGC 2 cut(s) 38, 213
BstDEI CTNAG 2 cut(s) 435, 763
BstDSI CCRYGG 2 cut(s) 178, 216
BstF5I GGATG 2 cut(s) 200, 636
BstFNI CGCG 3 cut(s) 63, 180, 218
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 5 cut(s) 14, 25, 242, 274, 511
BstMAI GTCTC 3 cut(s) 65, 135, 168
BstMBI GATC 5 cut(s) 11, 22, 239, 271, 508
BstMCI CGRYCG 1 cut(s) 25
BstMWI GCNNNNNNNGC 6 cut(s) 33, 229, 445, 448, 589, 756
BstNI CCWGG 1 cut(s) 229
BstSCI CCNGG 2 cut(s) 227, 626
BstSLI GKGCMC 1 cut(s) 483
BstUI CGCG 3 cut(s) 63, 180, 218
BstV1I GCAGC 5 cut(s) 170, 426, 481, 561, 604
BstV2I GAAGAC 2 cut(s) 647, 700
BstX2I RGATCY 3 cut(s) 11, 239, 271
BstXI CCANNNNNNTGG 1 cut(s) 631
BstYI RGATCY 3 cut(s) 11, 239, 271
Bsu15I ATCGAT 1 cut(s) 21
BsuRI GGCC 3 cut(s) 232, 451, 716
BsuTUI ATCGAT 1 cut(s) 21
BtgI CCRYGG 2 cut(s) 178, 216
BtrI CACGTC 1 cut(s) 350
BtsCI GGATG 2 cut(s) 200, 636
BtsIMutI CAGTG 2 cut(s) 573, 619
Cac8I GCNNGC 2 cut(s) 38, 213
CfoI GCGC 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 3 cut(s) 231, 393, 450
Cfr42I CCGCGG 2 cut(s) 181, 219
ClaI ATCGAT 1 cut(s) 21
CseI GACGC 2 cut(s) 52, 69
Csp6I GTAC 2 cut(s) 564, 744
CspCI CAANNNNNGTGG 2 cut(s) 442, 477
CviAII CATG 2 cut(s) 166, 316
CviQI GTAC 2 cut(s) 564, 744
DdeI CTNAG 2 cut(s) 435, 763
DpnI GATC 5 cut(s) 13, 24, 241, 273, 510
DpnII GATC 5 cut(s) 11, 22, 239, 271, 508
EaeI YGGCCR 1 cut(s) 714
Eam1104I CTCTTC 1 cut(s) 512
EarI CTCTTC 1 cut(s) 512
EciI GGCGGA 2 cut(s) 109, 232
Eco130I CCWWGG 1 cut(s) 471
Eco24I GRGCYC 1 cut(s) 225
Eco31I GGTCTC 2 cut(s) 65, 168
Eco47I GGWCC 1 cut(s) 393
Eco72I CACGTG 1 cut(s) 756
EcoRII CCWGG 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 471
EcoT38I GRGCYC 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 471
FaeI CATG 2 cut(s) 169, 319
FaiI YATR 6 cut(s) 167, 258, 317, 342, 689, 770
FaqI GGGAC 1 cut(s) 445
FatI CATG 2 cut(s) 165, 315
FbaI TGATCA 1 cut(s) 508
FblI GTMKAC 1 cut(s) 132
FokI GGATG 2 cut(s) 187, 643
FriOI GRGCYC 1 cut(s) 225
FspBI CTAG 2 cut(s) 554, 561
GlaI GCGC 1 cut(s) 41
GsaI CCCAGC 1 cut(s) 671
GsuI CTGGAG 1 cut(s) 139
HaeIII GGCC 3 cut(s) 232, 451, 716
HapII CCGG 2 cut(s) 147, 627
HgaI GACGC 2 cut(s) 52, 69
HhaI GCGC 1 cut(s) 42
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 2 cut(s) 169, 319
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 2 cut(s) 354, 708
HpaII CCGG 2 cut(s) 147, 627
HphI GGTGA 2 cut(s) 512, 688
Hpy166II GTNNAC 3 cut(s) 133, 353, 481
Hpy188I TCNGA 5 cut(s) 16, 59, 79, 239, 276
Hpy188III TCNNGA 3 cut(s) 156, 292, 701
Hpy8I GTNNAC 3 cut(s) 133, 353, 481
Hpy99I CGWCG 7 cut(s) 63, 68, 131, 134, 137, 197, 266
HpyAV CCTTC 4 cut(s) 74, 131, 365, 398
HpyCH4III ACNGT 2 cut(s) 266, 568
HpyCH4IV ACGT 3 cut(s) 129, 349, 755
HpyCH4V TGCA 4 cut(s) 186, 325, 481, 759
HpyF10VI GCNNNNNNNGC 6 cut(s) 33, 229, 445, 448, 589, 756
HpyF3I CTNAG 2 cut(s) 435, 763
HpySE526I ACGT 3 cut(s) 129, 349, 755
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 2 cut(s) 169, 319
HspAI GCGC 1 cut(s) 40
KpnI GGTACC 1 cut(s) 747
Ksp22I TGATCA 1 cut(s) 508
KspI CCGCGG 2 cut(s) 181, 219
Kzo9I GATC 5 cut(s) 11, 22, 239, 271, 508
LguI GCTCTTC 1 cut(s) 512
LmnI GCTCC 3 cut(s) 158, 220, 755
Lsp1109I GCAGC 5 cut(s) 170, 426, 481, 561, 604
LweI GCATC 3 cut(s) 102, 318, 768
MaeI CTAG 2 cut(s) 554, 561
MaeII ACGT 3 cut(s) 129, 349, 755
MaeIII GTNAC 1 cut(s) 500
MalI GATC 5 cut(s) 13, 24, 241, 273, 510
MboI GATC 5 cut(s) 11, 22, 239, 271, 508
MboII GAAGA 7 cut(s) 88, 343, 529, 584, 649, 652, 705
MflI RGATCY 3 cut(s) 11, 239, 271
MhlI GDGCHC 2 cut(s) 225, 483
MluCI AATT 3 cut(s) 320, 386, 606
MluI ACGCGT 1 cut(s) 61
MlyI GAGTC 1 cut(s) 348
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 9 cut(s) 85, 124, 127, 162, 297, 361, 384, 595, 708
MslI CAYNNNNRTG 3 cut(s) 314, 486, 629
MspA1I CMGCKG 2 cut(s) 180, 218
MspI CCGG 2 cut(s) 147, 627
MspR9I CCNGG 2 cut(s) 229, 628
MvaI CCWGG 1 cut(s) 229
MvnI CGCG 3 cut(s) 63, 180, 218
MwoI GCNNNNNNNGC 6 cut(s) 33, 229, 445, 448, 589, 756
NciI CCSGG 1 cut(s) 628
NdeII GATC 5 cut(s) 11, 22, 239, 271, 508
NlaIII CATG 2 cut(s) 169, 319
NlaIV GGNNCC 3 cut(s) 154, 222, 745
NmeAIII GCCGAG 1 cut(s) 336
NmuCI GTSAC 1 cut(s) 500
OliI CACNNNNGTG 1 cut(s) 486
PciSI GCTCTTC 1 cut(s) 512
PcsI WCGNNNNNNNCGW 3 cut(s) 132, 169, 363
PfeI GAWTC 1 cut(s) 708
Ple19I CGATCG 1 cut(s) 25
PleI GAGTC 1 cut(s) 348
PmaCI CACGTG 1 cut(s) 756
PmlI CACGTG 1 cut(s) 756
PpsI GAGTC 1 cut(s) 348
Ppu21I YACGTR 1 cut(s) 756
Psp6I CCWGG 1 cut(s) 227
PspCI CACGTG 1 cut(s) 756
PspFI CCCAGC 1 cut(s) 667
PspGI CCWGG 1 cut(s) 227
PspN4I GGNNCC 3 cut(s) 154, 222, 745
PspPI GGNCC 3 cut(s) 231, 393, 450
PsuI RGATCY 3 cut(s) 11, 239, 271
PvuI CGATCG 1 cut(s) 25
RsaI GTAC 2 cut(s) 565, 745
RsaNI GTAC 2 cut(s) 564, 744
RseI CAYNNNNRTG 3 cut(s) 314, 486, 629
SacII CCGCGG 2 cut(s) 181, 219
SalI GTCGAC 1 cut(s) 131
SapI GCTCTTC 1 cut(s) 512
Sau3AI GATC 5 cut(s) 11, 22, 239, 271, 508
Sau96I GGNCC 3 cut(s) 231, 393, 450
SchI GAGTC 1 cut(s) 348
ScrFI CCNGG 2 cut(s) 229, 628
SduI GDGCHC 2 cut(s) 225, 483
SfaNI GCATC 3 cut(s) 102, 318, 768
Sfr303I CCGCGG 2 cut(s) 181, 219
SgrAI CRCCGGYG 1 cut(s) 146
SgrBI CCGCGG 2 cut(s) 181, 219
SgrDI CGTCGACG 1 cut(s) 131
SinI GGWCC 1 cut(s) 393
SmiMI CAYNNNNRTG 3 cut(s) 314, 486, 629
SmlI CTYRAG 1 cut(s) 730
SmoI CTYRAG 1 cut(s) 730
SpeI ACTAGT 1 cut(s) 560
Sse9I AATT 3 cut(s) 320, 386, 606
SspI AATATT 1 cut(s) 280
SspMI CTAG 2 cut(s) 554, 561
StyD4I CCNGG 2 cut(s) 227, 626
StyI CCWWGG 1 cut(s) 471
TaaI ACNGT 2 cut(s) 266, 568
TaiI ACGT 3 cut(s) 132, 352, 758
TaqI TCGA 4 cut(s) 21, 132, 291, 660
TasI AATT 3 cut(s) 320, 386, 606
TatI WGTACW 1 cut(s) 563
TauI GCSGC 8 cut(s) 153, 183, 218, 445, 448, 451, 620, 623
TfiI GAWTC 1 cut(s) 708
TscAI CASTG 2 cut(s) 573, 619
TseFI GTSAC 1 cut(s) 500
TseI GCWGC 5 cut(s) 183, 439, 494, 549, 592
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 4 cut(s) 189, 332, 344, 417
TspGWI ACGGA 1 cut(s) 360
TspRI CASTG 2 cut(s) 573, 619
VneI GTGCAC 1 cut(s) 479
VpaK11BI GGWCC 1 cut(s) 393
XmiI GTMKAC 1 cut(s) 132
XspI CTAG 2 cut(s) 554, 561
ZraI GACGTC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.