Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Reverse (-)

45862857 .. 45863703

Gene Structure 847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG247100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAGGCGAGACCGCGGCTGCAACGCCGTCGTTTCATCCACCCAGCTTGCCGTGGAGCCCACCAGACCCGTCAGATCCGCCGTGAAACCCTATGACGACGACGGTGGGGATCATCTGAATATTGGGGAGTTCGAGAAACACACGAGGGGCATCGGCATGAAATTGCTGATGAAGATGGGATATAACGGACGTGGACTCGGCAAAAACGAGGAAGGTATTGTGATCCCAATTGAAGCCGAATTGAGGCCCAAAAATGAAGGTCTTGGTTTTGATTACAAGGAGGGGACTAAGCTGCGGCGGCGGCGGCCCACATCGTTTGTGAAAGCCAAGGTGGTGCACAAAAGTGTCGCTGCTGGTGACAATGATCACCAGAAGAGCAAAACAGAAATAACCAAAAAACCAAGCGGCCAAAGCAATACTACAGTGGAAGAACACAAGCCCCACAAGCAGCCGCGGCGGCCTAATGAGGCAATTACCAGTGCCGCCGCCACCGGGATGGAGAAGAAGACGAGTACAAAAGGTGTCGATTTGCTGGAAAAGGTGATGGCTGATATGAGAAGACCTCTTGATGGAATCTTGGCCGACTTTGAGAATCTGAGTTTGATAGACAACAGCTCCAGGTGCATCTTAGCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

212

Amino Acids

23.45

Weight (kDa)

9.56

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	48 - 89	6.2e-16	G-patch domain
G-patch_2	PF12656	51 - 92	6.1e-07	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	15, 454
AclWI	GGATC	3 cut(s)	69, 117, 217
AcoI	YGGCCR	2 cut(s)	406, 579
AfaI	GTAC	1 cut(s)	514
AfiI	CCNNNNNNNGG	3 cut(s)	243, 492, 569
AgsI	TTSAA	1 cut(s)	233
AjiI	CACGTC	1 cut(s)	191
AjnI	CCWGG	1 cut(s)	617
AleI	CACNNNNGTG	1 cut(s)	342
AluBI	AGCT	4 cut(s)	46, 292, 615, 632
AluI	AGCT	4 cut(s)	46, 292, 615, 632
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	1 cut(s)	3
Alw44I	GTGCAC	1 cut(s)	335
AlwI	GGATC	3 cut(s)	69, 117, 217
AoxI	GGCC	5 cut(s)	245, 305, 406, 458, 579
ApaLI	GTGCAC	1 cut(s)	335
ApeKI	GCWGC	4 cut(s)	18, 292, 350, 448
AspS9I	GGNCC	2 cut(s)	246, 306
AsuC2I	CCSGG	1 cut(s)	493
AsuHPI	GGTGA	3 cut(s)	359, 368, 553
BaeGI	GKGCMC	1 cut(s)	339
BanII	GRGCYC	1 cut(s)	60
BauI	CACGAG	1 cut(s)	142
BbsI	GAAGAC	2 cut(s)	512, 565
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	4 cut(s)	5, 279, 337, 460
BccI	CCATC	4 cut(s)	169, 490, 538, 563
BceAI	ACGGC	3 cut(s)	11, 35, 65
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BciT130I	CCWGG	1 cut(s)	619
BclI	TGATCA	1 cut(s)	364
BcnI	CCSGG	1 cut(s)	493
BcoDI	GTCTC	1 cut(s)	3
BfmI	CTRYAG	1 cut(s)	420
BglI	GCCNNNNNGGC	1 cut(s)	457
Bme1390I	CCNGG	2 cut(s)	493, 619
BmgBI	CACGTC	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	246, 306
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	2 cut(s)	493, 619
BmsI	GCATC	2 cut(s)	159, 633
BpiI	GAAGAC	2 cut(s)	512, 565
BplI	GAGNNNNNCTC	2 cut(s)	547, 579
BpmI	CTGGAG	1 cut(s)	601
BpuMI	CCSGG	1 cut(s)	493
BsaI	GGTCTC	1 cut(s)	3
BsaJI	CCNNGG	4 cut(s)	13, 51, 327, 452
BsaXI	ACNNNNNCTCC	2 cut(s)	599, 629
Bsc4I	CCNNNNNNNGG	3 cut(s)	243, 492, 569
Bse1I	ACTGG	1 cut(s)	477
BseBI	CCWGG	1 cut(s)	619
BseDI	CCNNGG	4 cut(s)	13, 51, 327, 452
BseGI	GGATG	2 cut(s)	35, 501
BseLI	CCNNNNNNNGG	3 cut(s)	243, 492, 569
BseMII	CTCAG	1 cut(s)	587
BseNI	ACTGG	1 cut(s)	477
BseSI	GKGCMC	1 cut(s)	339
BseXI	GCAGC	4 cut(s)	5, 279, 337, 460
BseYI	CCCAGC	1 cut(s)	42
Bsh1236I	CGCG	2 cut(s)	15, 454
BshFI	GGCC	5 cut(s)	247, 307, 408, 460, 581
BsiHKAI	GWGCWC	1 cut(s)	339
BsiSI	CCGG	1 cut(s)	492
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	3 cut(s)	243, 492, 569
BsmAI	GTCTC	1 cut(s)	3
BsmFI	GGGAC	1 cut(s)	298
BsnI	GGCC	5 cut(s)	247, 307, 408, 460, 581
Bso31I	GGTCTC	1 cut(s)	3
Bsp1286I	GDGCHC	2 cut(s)	60, 339
Bsp143I	GATC	4 cut(s)	74, 109, 222, 364
BspANI	GGCC	5 cut(s)	247, 307, 408, 460, 581
BspCNI	CTCAG	1 cut(s)	588
BspFNI	CGCG	2 cut(s)	15, 454
BspLI	GGNNCC	1 cut(s)	57
BspPI	GGATC	3 cut(s)	69, 117, 217
BspQI	GCTCTTC	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	477
BssECI	CCNNGG	4 cut(s)	13, 51, 327, 452
BssMI	GATC	4 cut(s)	74, 109, 222, 364
BssSI	CACGAG	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	327
Bst2BI	CACGAG	1 cut(s)	142
Bst2UI	CCWGG	1 cut(s)	619
Bst4CI	ACNGT	2 cut(s)	104, 424
Bst6I	CTCTTC	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	3 cut(s)	288, 596, 628
BstDSI	CCRYGG	3 cut(s)	13, 51, 452
BstF5I	GGATG	2 cut(s)	35, 501
BstFNI	CGCG	2 cut(s)	15, 454
BstKTI	GATC	4 cut(s)	77, 112, 225, 367
BstMAI	GTCTC	1 cut(s)	3
BstMBI	GATC	4 cut(s)	74, 109, 222, 364
BstMWI	GCNNNNNNNGC	8 cut(s)	298, 301, 304, 411, 445, 454, 457, 621
BstNI	CCWGG	1 cut(s)	619
BstSCI	CCNGG	2 cut(s)	491, 617
BstSFI	CTRYAG	1 cut(s)	420
BstSLI	GKGCMC	1 cut(s)	339
BstUI	CGCG	2 cut(s)	15, 454
BstV1I	GCAGC	4 cut(s)	5, 279, 337, 460
BstV2I	GAAGAC	2 cut(s)	512, 565
BstX2I	RGATCY	1 cut(s)	74
BstXI	CCANNNNNNTGG	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	74
BsuRI	GGCC	5 cut(s)	247, 307, 408, 460, 581
BtgI	CCRYGG	3 cut(s)	13, 51, 452
BtrI	CACGTC	1 cut(s)	191
BtsCI	GGATG	2 cut(s)	35, 501
BtsIMutI	CAGTG	2 cut(s)	429, 484
Cac8I	GCNNGC	1 cut(s)	48
Cfr13I	GGNCC	2 cut(s)	246, 306
Cfr42I	CCGCGG	2 cut(s)	16, 455
Csp6I	GTAC	1 cut(s)	513
CspCI	CAANNNNNGTGG	4 cut(s)	28, 63, 298, 333
CviAII	CATG	1 cut(s)	157
CviQI	GTAC	1 cut(s)	513
DdeI	CTNAG	3 cut(s)	288, 596, 628
DpnI	GATC	4 cut(s)	76, 111, 224, 366
DpnII	GATC	4 cut(s)	74, 109, 222, 364
EaeI	YGGCCR	2 cut(s)	406, 579
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
EciI	GGCGGA	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	3
EcoRII	CCWGG	1 cut(s)	617
EcoT14I	CCWWGG	1 cut(s)	327
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	1 cut(s)	160
FaiI	YATR	5 cut(s)	93, 158, 183, 554, 635
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	1 cut(s)	156
FbaI	TGATCA	1 cut(s)	364
FokI	GGATG	2 cut(s)	22, 508
FriOI	GRGCYC	1 cut(s)	60
GsaI	CCCAGC	1 cut(s)	46
GsuI	CTGGAG	1 cut(s)	601
HaeIII	GGCC	5 cut(s)	247, 307, 408, 460, 581
HapII	CCGG	1 cut(s)	492
Hin1II	CATG	1 cut(s)	160
HinfI	GANTC	3 cut(s)	195, 573, 592
HpaII	CCGG	1 cut(s)	492
HphI	GGTGA	3 cut(s)	359, 368, 553
Hpy166II	GTNNAC	2 cut(s)	194, 337
Hpy188I	TCNGA	3 cut(s)	74, 117, 597
Hpy188III	TCNNGA	2 cut(s)	133, 566
Hpy8I	GTNNAC	2 cut(s)	194, 337
Hpy99I	CGWCG	3 cut(s)	32, 101, 104
HpyAV	CCTTC	2 cut(s)	206, 251
HpyCH4III	ACNGT	2 cut(s)	104, 424
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	3 cut(s)	21, 337, 624
HpyF10VI	GCNNNNNNNGC	8 cut(s)	298, 301, 304, 411, 445, 454, 457, 621
HpyF3I	CTNAG	3 cut(s)	288, 596, 628
HpySE526I	ACGT	1 cut(s)	190
Hsp92II	CATG	1 cut(s)	160
Ksp22I	TGATCA	1 cut(s)	364
KspI	CCGCGG	2 cut(s)	16, 455
Kzo9I	GATC	4 cut(s)	74, 109, 222, 364
LguI	GCTCTTC	1 cut(s)	368
LmnI	GCTCC	2 cut(s)	55, 620
LpnPI	CCDG	9 cut(s)	56, 76, 339, 383, 490, 505, 518, 604, 631
Lsp1109I	GCAGC	4 cut(s)	5, 279, 337, 460
LweI	GCATC	2 cut(s)	159, 633
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	4 cut(s)	76, 111, 224, 366
MboI	GATC	4 cut(s)	74, 109, 222, 364
MboII	GAAGA	6 cut(s)	184, 385, 440, 514, 517, 570
MfeI	CAATTG	1 cut(s)	228
MflI	RGATCY	1 cut(s)	74
MhlI	GDGCHC	2 cut(s)	60, 339
MluCI	AATT	4 cut(s)	161, 228, 239, 471
MlyI	GAGTC	1 cut(s)	189
MnlI	CCTC	6 cut(s)	138, 202, 237, 274, 460, 573
MslI	CAYNNNNRTG	3 cut(s)	155, 342, 494
MspA1I	CMGCKG	2 cut(s)	15, 454
MspI	CCGG	1 cut(s)	492
MspR9I	CCNGG	2 cut(s)	493, 619
MunI	CAATTG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	619
MvnI	CGCG	2 cut(s)	15, 454
MwoI	GCNNNNNNNGC	8 cut(s)	298, 301, 304, 411, 445, 454, 457, 621
NciI	CCSGG	1 cut(s)	493
NdeII	GATC	4 cut(s)	74, 109, 222, 364
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	1 cut(s)	57
NmeAIII	GCCGAG	1 cut(s)	177
NmuCI	GTSAC	1 cut(s)	356
OliI	CACNNNNGTG	1 cut(s)	342
PciSI	GCTCTTC	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PfeI	GAWTC	2 cut(s)	573, 592
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	617
PspFI	CCCAGC	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	617
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	2 cut(s)	246, 306
PsuI	RGATCY	1 cut(s)	74
RsaI	GTAC	1 cut(s)	514
RsaNI	GTAC	1 cut(s)	513
RseI	CAYNNNNRTG	3 cut(s)	155, 342, 494
SacII	CCGCGG	2 cut(s)	16, 455
SapI	GCTCTTC	1 cut(s)	368
Sau3AI	GATC	4 cut(s)	74, 109, 222, 364
Sau96I	GGNCC	2 cut(s)	246, 306
SchI	GAGTC	1 cut(s)	189
ScrFI	CCNGG	2 cut(s)	493, 619
SduI	GDGCHC	2 cut(s)	60, 339
SfaNI	GCATC	2 cut(s)	159, 633
SfcI	CTRYAG	1 cut(s)	420
Sfr303I	CCGCGG	2 cut(s)	16, 455
SgrBI	CCGCGG	2 cut(s)	16, 455
SmiMI	CAYNNNNRTG	3 cut(s)	155, 342, 494
Sse9I	AATT	4 cut(s)	161, 228, 239, 471
SspI	AATATT	1 cut(s)	121
StyD4I	CCNGG	2 cut(s)	491, 617
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	104, 424
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	2 cut(s)	132, 525
TasI	AATT	4 cut(s)	161, 228, 239, 471
TatI	WGTACW	1 cut(s)	512
TfiI	GAWTC	2 cut(s)	573, 592
TscAI	CASTG	2 cut(s)	429, 484
TseFI	GTSAC	1 cut(s)	356
TseI	GCWGC	4 cut(s)	18, 292, 350, 448
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	4 cut(s)	24, 173, 185, 270
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	2 cut(s)	429, 484
VneI	GTGCAC	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.