Rmu_sc0012211.1_g000001

Septin and tuftelin-interacting protein 1 homolog

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012211.1
Physical Location & Seq
Forward (+)
9702 .. 10469
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012211.1_g000001.1.cds

Sequence Viewer

Length: 768 bp
atggatttgagatctgaaatcgatcgcctttctcgcaagcgcaaggaggacaatctccgacgcgtcgttgagacctccgaaggaaatctccgcatcttcgctctcgcttcctcctccgaccacgacgtcgacgaaggagacaacggcggctccagaaaacgcgtgaggcgagaccgcggctgcaacgccgtcgtttcatccaccaagctcgccgcggagcccaccaggcccgtcagatccgccgtgaaaccctatgacgacggtggggatctgaataaacacacgaggggcatcggcatgaaattgcagatgaagatgggctataacggacgtggactcggcaaaaacgaggaaggtattgaagccgaattgaggtccaaaaatgaaggtcttggttttgattacaagcaggggactaagctgctgcggcggcggcccacatcgtttgtgaaagccaaggtggtgcacaaaagtgtcgctgctggtgacaatgatcacaagaagagcaaaacagaaataaccaaaaaaccaagcagcctaaacacttgtacagtggaagaacacaagccccacaagcagccgcagcggcctaatgaggcaattaccggtgccgccgccaccgggatggagaagaagtcgaccaccaaaggtgtcgatttgctgggaaaggtgatggctgatatgagaagacctcttgatggaatcttggccgactttgagaatctgagtttgatagacaacagctgcaggtgcatcttagctatgtaa

Protein Analysis

255

Amino Acids

28.19

Weight (kDa)

9.69

Isoelectric Point (pI)

55.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 738
AasI GACNNNNNNGTC 1 cut(s) 125
AatII GACGTC 1 cut(s) 129
Acc36I ACCTGC 1 cut(s) 738
AccB1I GGYRCC 1 cut(s) 608
AccI GTMKAC 2 cut(s) 129, 638
AccII CGCG 4 cut(s) 63, 162, 177, 215
AclWI GGATC 2 cut(s) 231, 276
AcoI YGGCCR 1 cut(s) 708
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 1 cut(s) 550
AfiI CCNNNNNNNGG 3 cut(s) 372, 621, 698
AflIII ACRYGT 2 cut(s) 61, 160
AgeI ACCGGT 1 cut(s) 605
AgsI TTSAA 1 cut(s) 362
AjiI CACGTC 1 cut(s) 332
AjnI CCWGG 1 cut(s) 224
AleI CACNNNNGTG 1 cut(s) 471
AluBI AGCT 4 cut(s) 208, 421, 744, 761
AluI AGCT 4 cut(s) 208, 421, 744, 761
Alw21I GWGCWC 1 cut(s) 468
Alw26I GTCTC 3 cut(s) 65, 132, 165
Alw44I GTGCAC 1 cut(s) 464
AlwI GGATC 2 cut(s) 231, 276
AoxI GGCC 4 cut(s) 227, 434, 587, 708
ApaLI GTGCAC 1 cut(s) 464
ApeKI GCWGC 8 cut(s) 180, 421, 424, 479, 534, 577, 583, 744
AsiGI ACCGGT 1 cut(s) 605
AspLEI GCGC 1 cut(s) 42
AspS9I GGNCC 3 cut(s) 228, 375, 435
AsuC2I CCSGG 1 cut(s) 622
AsuHPI GGTGA 2 cut(s) 497, 682
AvaII GGWCC 1 cut(s) 375
BaeGI GKGCMC 1 cut(s) 468
BanI GGYRCC 1 cut(s) 608
BanII GRGCYC 1 cut(s) 222
BauI CACGAG 1 cut(s) 283
BbsI GAAGAC 1 cut(s) 694
Bbv12I GWGCWC 1 cut(s) 468
BbvI GCAGC 8 cut(s) 167, 408, 411, 466, 546, 589, 595, 731
BccI CCATC 4 cut(s) 310, 619, 667, 692
BceAI ACGGC 3 cut(s) 160, 173, 227
BcgI CGANNNNNNTGC 2 cut(s) 172, 206
BciT130I CCWGG 1 cut(s) 226
BclI TGATCA 1 cut(s) 493
BcnI CCSGG 1 cut(s) 622
BcoDI GTCTC 3 cut(s) 65, 132, 165
BfmI CTRYAG 1 cut(s) 745
BfuAI ACCTGC 1 cut(s) 738
BglI GCCNNNNNGGC 2 cut(s) 226, 586
BglII AGATCT 1 cut(s) 11
Bme1390I CCNGG 2 cut(s) 226, 622
Bme18I GGWCC 1 cut(s) 375
BmgBI CACGTC 1 cut(s) 332
BmgT120I GGNCC 3 cut(s) 228, 375, 435
BmiI GGNNCC 3 cut(s) 151, 219, 610
BmrFI CCNGG 2 cut(s) 226, 622
BmsI GCATC 3 cut(s) 102, 300, 762
BpiI GAAGAC 1 cut(s) 694
BplI GAGNNNNNCTC 2 cut(s) 676, 708
BpmI CTGGAG 1 cut(s) 136
BpuMI CCSGG 1 cut(s) 622
Bsa29I ATCGAT 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 126
BsaI GGTCTC 2 cut(s) 65, 165
BsaJI CCNNGG 3 cut(s) 175, 213, 456
BsaWI WCCGGW 1 cut(s) 605
BsaXI ACNNNNNCTCC 4 cut(s) 134, 164, 620, 650
Bsc4I CCNNNNNNNGG 3 cut(s) 372, 621, 698
Bse118I RCCGGY 1 cut(s) 605
BseBI CCWGG 1 cut(s) 226
BseCI ATCGAT 1 cut(s) 21
BseDI CCNNGG 3 cut(s) 175, 213, 456
BseGI GGATG 2 cut(s) 197, 630
BseLI CCNNNNNNNGG 3 cut(s) 372, 621, 698
BseMII CTCAG 1 cut(s) 716
BseRI GAGGAG 1 cut(s) 103
BseSI GKGCMC 1 cut(s) 468
BseXI GCAGC 8 cut(s) 167, 408, 411, 466, 546, 589, 595, 731
BseYI CCCAGC 1 cut(s) 661
Bsh1236I CGCG 4 cut(s) 63, 162, 177, 215
Bsh1285I CGRYCG 1 cut(s) 25
BshFI GGCC 4 cut(s) 229, 436, 589, 710
BshNI GGYRCC 1 cut(s) 608
BshTI ACCGGT 1 cut(s) 605
BshVI ATCGAT 1 cut(s) 21
BsiEI CGRYCG 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 468
BsiSI CCGG 2 cut(s) 606, 621
BslFI GGGAC 1 cut(s) 427
BslI CCNNNNNNNGG 3 cut(s) 372, 621, 698
BsmAI GTCTC 3 cut(s) 65, 132, 165
BsmFI GGGAC 1 cut(s) 427
BsnI GGCC 4 cut(s) 229, 436, 589, 710
Bso31I GGTCTC 2 cut(s) 65, 165
Bsp1286I GDGCHC 2 cut(s) 222, 468
Bsp1407I TGTACA 1 cut(s) 548
Bsp143I GATC 5 cut(s) 11, 22, 236, 268, 493
BspANI GGCC 4 cut(s) 229, 436, 589, 710
BspCNI CTCAG 1 cut(s) 717
BspDI ATCGAT 1 cut(s) 21
BspFNI CGCG 4 cut(s) 63, 162, 177, 215
BspLI GGNNCC 3 cut(s) 151, 219, 610
BspMAI CTGCAG 1 cut(s) 749
BspMI ACCTGC 1 cut(s) 738
BspPI GGATC 2 cut(s) 231, 276
BspQI GCTCTTC 1 cut(s) 497
BspT107I GGYRCC 1 cut(s) 608
BspTNI GGTCTC 2 cut(s) 65, 165
BsrFI RCCGGY 1 cut(s) 605
BsrGI TGTACA 1 cut(s) 548
BssAI RCCGGY 1 cut(s) 605
BssECI CCNNGG 3 cut(s) 175, 213, 456
BssMI GATC 5 cut(s) 11, 22, 236, 268, 493
BssNI GRCGYC 1 cut(s) 126
BssSI CACGAG 1 cut(s) 283
BssT1I CCWWGG 1 cut(s) 456
Bst2BI CACGAG 1 cut(s) 283
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 2 cut(s) 263, 553
Bst6I CTCTTC 1 cut(s) 497
BstACI GRCGYC 1 cut(s) 126
BstAUI TGTACA 1 cut(s) 548
BstC8I GCNNGC 2 cut(s) 38, 210
BstDEI CTNAG 3 cut(s) 417, 725, 757
BstDSI CCRYGG 2 cut(s) 175, 213
BstF5I GGATG 2 cut(s) 197, 630
BstFNI CGCG 4 cut(s) 63, 162, 177, 215
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 5 cut(s) 14, 25, 239, 271, 496
BstMAI GTCTC 3 cut(s) 65, 132, 165
BstMBI GATC 5 cut(s) 11, 22, 236, 268, 493
BstMCI CGRYCG 1 cut(s) 25
BstMWI GCNNNNNNNGC 9 cut(s) 33, 226, 427, 430, 433, 574, 583, 586, 750
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 2 cut(s) 224, 620
BstSFI CTRYAG 1 cut(s) 745
BstSLI GKGCMC 1 cut(s) 468
BstUI CGCG 4 cut(s) 63, 162, 177, 215
BstV1I GCAGC 8 cut(s) 167, 408, 411, 466, 546, 589, 595, 731
BstV2I GAAGAC 1 cut(s) 694
BstX2I RGATCY 3 cut(s) 11, 236, 268
BstXI CCANNNNNNTGG 1 cut(s) 625
BstYI RGATCY 3 cut(s) 11, 236, 268
Bsu15I ATCGAT 1 cut(s) 21
BsuRI GGCC 4 cut(s) 229, 436, 589, 710
BsuTUI ATCGAT 1 cut(s) 21
BtgI CCRYGG 2 cut(s) 175, 213
BtrI CACGTC 1 cut(s) 332
BtsCI GGATG 2 cut(s) 197, 630
BtsIMutI CAGTG 1 cut(s) 558
BveI ACCTGC 1 cut(s) 738
Cac8I GCNNGC 2 cut(s) 38, 210
CfoI GCGC 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 605
Cfr13I GGNCC 3 cut(s) 228, 375, 435
Cfr42I CCGCGG 2 cut(s) 178, 216
ClaI ATCGAT 1 cut(s) 21
CseI GACGC 2 cut(s) 52, 69
Csp6I GTAC 1 cut(s) 549
CspAI ACCGGT 1 cut(s) 605
CspCI CAANNNNNGTGG 2 cut(s) 427, 462
CviAII CATG 1 cut(s) 298
CviQI GTAC 1 cut(s) 549
DdeI CTNAG 3 cut(s) 417, 725, 757
DpnI GATC 5 cut(s) 13, 24, 238, 270, 495
DpnII GATC 5 cut(s) 11, 22, 236, 268, 493
DrdI GACNNNNNNGTC 1 cut(s) 125
DseDI GACNNNNNNGTC 1 cut(s) 125
EaeI YGGCCR 1 cut(s) 708
Eam1104I CTCTTC 1 cut(s) 497
EarI CTCTTC 1 cut(s) 497
EciI GGCGGA 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 456
Eco24I GRGCYC 1 cut(s) 222
Eco31I GGTCTC 2 cut(s) 65, 165
Eco47I GGWCC 1 cut(s) 375
EcoRII CCWGG 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 456
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 456
FaeI CATG 1 cut(s) 301
FaiI YATR 5 cut(s) 255, 299, 324, 683, 764
FaqI GGGAC 1 cut(s) 427
FatI CATG 1 cut(s) 297
FbaI TGATCA 1 cut(s) 493
FblI GTMKAC 2 cut(s) 129, 638
FokI GGATG 2 cut(s) 184, 637
FriOI GRGCYC 1 cut(s) 222
GlaI GCGC 1 cut(s) 41
GsaI CCCAGC 1 cut(s) 665
GsuI CTGGAG 1 cut(s) 136
HaeIII GGCC 4 cut(s) 229, 436, 589, 710
HapII CCGG 2 cut(s) 606, 621
HgaI GACGC 2 cut(s) 52, 69
HhaI GCGC 1 cut(s) 42
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 1 cut(s) 301
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HincII GTYRAC 2 cut(s) 130, 639
HindII GTYRAC 2 cut(s) 130, 639
HinfI GANTC 3 cut(s) 336, 702, 721
HpaII CCGG 2 cut(s) 606, 621
HphI GGTGA 2 cut(s) 497, 682
Hpy166II GTNNAC 4 cut(s) 130, 335, 466, 639
Hpy188I TCNGA 7 cut(s) 16, 59, 79, 118, 236, 273, 726
Hpy188III TCNNGA 2 cut(s) 153, 695
Hpy8I GTNNAC 4 cut(s) 130, 335, 466, 639
Hpy99I CGWCG 7 cut(s) 63, 68, 128, 131, 134, 194, 263
HpyAV CCTTC 4 cut(s) 74, 128, 347, 380
HpyCH4III ACNGT 2 cut(s) 263, 553
HpyCH4IV ACGT 2 cut(s) 126, 331
HpyCH4V TGCA 5 cut(s) 183, 307, 466, 747, 753
HpyF10VI GCNNNNNNNGC 9 cut(s) 33, 226, 427, 430, 433, 574, 583, 586, 750
HpyF3I CTNAG 3 cut(s) 417, 725, 757
HpySE526I ACGT 2 cut(s) 126, 331
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 1 cut(s) 301
HspAI GCGC 1 cut(s) 40
Ksp22I TGATCA 1 cut(s) 493
KspI CCGCGG 2 cut(s) 178, 216
Kzo9I GATC 5 cut(s) 11, 22, 236, 268, 493
LguI GCTCTTC 1 cut(s) 497
LmnI GCTCC 2 cut(s) 155, 217
LpnPI CCDG 9 cut(s) 166, 211, 238, 395, 468, 619, 634, 647, 733
Lsp1109I GCAGC 8 cut(s) 167, 408, 411, 466, 546, 589, 595, 731
LweI GCATC 3 cut(s) 102, 300, 762
MaeII ACGT 2 cut(s) 126, 331
MaeIII GTNAC 1 cut(s) 485
MalI GATC 5 cut(s) 13, 24, 238, 270, 495
MboI GATC 5 cut(s) 11, 22, 236, 268, 493
MboII GAAGA 6 cut(s) 88, 325, 514, 569, 643, 699
MflI RGATCY 3 cut(s) 11, 236, 268
MhlI GDGCHC 2 cut(s) 222, 468
MluCI AATT 3 cut(s) 302, 368, 600
MluI ACGCGT 2 cut(s) 61, 160
MlyI GAGTC 1 cut(s) 330
MmeI TCCRAC 2 cut(s) 82, 141
MslI CAYNNNNRTG 3 cut(s) 296, 471, 623
MspA1I CMGCKG 4 cut(s) 177, 215, 586, 744
MspI CCGG 2 cut(s) 606, 621
MspR9I CCNGG 2 cut(s) 226, 622
MvaI CCWGG 1 cut(s) 226
MvnI CGCG 4 cut(s) 63, 162, 177, 215
MwoI GCNNNNNNNGC 9 cut(s) 33, 226, 427, 430, 433, 574, 583, 586, 750
NciI CCSGG 1 cut(s) 622
NdeII GATC 5 cut(s) 11, 22, 236, 268, 493
NlaIII CATG 1 cut(s) 301
NlaIV GGNNCC 3 cut(s) 151, 219, 610
NmeAIII GCCGAG 1 cut(s) 318
NmuCI GTSAC 1 cut(s) 485
OliI CACNNNNGTG 1 cut(s) 471
PaqCI CACCTGC 1 cut(s) 738
PciSI GCTCTTC 1 cut(s) 497
PcsI WCGNNNNNNNCGW 3 cut(s) 129, 166, 345
PfeI GAWTC 2 cut(s) 702, 721
PinAI ACCGGT 1 cut(s) 605
Ple19I CGATCG 1 cut(s) 25
PleI GAGTC 1 cut(s) 330
PpsI GAGTC 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 224
PspFI CCCAGC 1 cut(s) 661
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 3 cut(s) 151, 219, 610
PspPI GGNCC 3 cut(s) 228, 375, 435
PstI CTGCAG 1 cut(s) 749
PsuI RGATCY 3 cut(s) 11, 236, 268
PvuI CGATCG 1 cut(s) 25
PvuII CAGCTG 1 cut(s) 744
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
RseI CAYNNNNRTG 3 cut(s) 296, 471, 623
SacII CCGCGG 2 cut(s) 178, 216
SalI GTCGAC 2 cut(s) 128, 637
SapI GCTCTTC 1 cut(s) 497
Sau3AI GATC 5 cut(s) 11, 22, 236, 268, 493
Sau96I GGNCC 3 cut(s) 228, 375, 435
SchI GAGTC 1 cut(s) 330
ScrFI CCNGG 2 cut(s) 226, 622
SduI GDGCHC 2 cut(s) 222, 468
SfaNI GCATC 3 cut(s) 102, 300, 762
SfcI CTRYAG 1 cut(s) 745
Sfr303I CCGCGG 2 cut(s) 178, 216
SgrBI CCGCGG 2 cut(s) 178, 216
SgrDI CGTCGACG 1 cut(s) 128
SinI GGWCC 1 cut(s) 375
SmiMI CAYNNNNRTG 3 cut(s) 296, 471, 623
Sse9I AATT 3 cut(s) 302, 368, 600
StyD4I CCNGG 2 cut(s) 224, 620
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 2 cut(s) 263, 553
TaiI ACGT 2 cut(s) 129, 334
TaqI TCGA 4 cut(s) 21, 129, 638, 654
TasI AATT 3 cut(s) 302, 368, 600
TatI WGTACW 1 cut(s) 548
TfiI GAWTC 2 cut(s) 702, 721
TscAI CASTG 1 cut(s) 558
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 8 cut(s) 180, 421, 424, 479, 534, 577, 583, 744
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 4 cut(s) 186, 314, 326, 399
TspGWI ACGGA 1 cut(s) 342
TspRI CASTG 1 cut(s) 558
VneI GTGCAC 1 cut(s) 464
VpaK11BI GGWCC 1 cut(s) 375
XmiI GTMKAC 2 cut(s) 129, 638
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.