Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Forward (+)

46457465 .. 46460605

Gene Structure 3141 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG186400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGATTTGAGGTCTGAAATCGATCTCTGTTCTCGCAAGCGCAAGGAGAGCAATCTCCGACGCGTCGTTGAGACCTCGGAAGGAAATCTCCGCATCTTCGCTCTCGCTTCCTCCTCCTCCGACCACCACGACGACGACAACGGAGACAACGGCGGCTCCAGAAAACGCATGAGGCGAGACCGCGGCTGCAACGCCGTCGTTTCATCCACCAAGCTCGCTGTGGAGCCCACCAGACCCGTCAGGTCCGCCGTGAAACCCTATGAGGACGGTGGGGATCTGAATATTGGGGAGTTCGAGAAACACACAAAGGGCATCGGCATGAAGTTGCTGATGAAGATGGGCTATAACGGACGCGGACTCGGCAGAAACGAGGAAGGCATTGTGAGCCCAATTGAAGCCGAATTGAGGCCCAAAAATGAAGGTCTTGGTTTTGATTACAAGGAGGGGGCTAAGCCGCGGCGGCGTCCCACATCGTTTGTGAAAGCCAAGGCGGTGCAGAAAAGTGTGGGTAATGGTGACAAAGATCACAAGCAGACCAAAACAGAAATAGCCAAAAAACCAAGCAGCCTAAACACTAGTACAGTGGAAGGACACAAGCCCAACGAGCAGCCTAATGAGGCAATTACCAGTGCCGCCGGGATGGGGAAGAAGACGAGTACAAAAGGTGTCGATTTGCTGGAAAAGGTGATGGCTGATATGAGAAGACCTCTTGATGGAATCTTGGCCGACCTTGAGAATTTGAGTTTGAAAGATACAACCTCCAGATTGATTGAGCTTCAGAATAGCCTCACTGCATTGCTCACTTATGATCCTGAGATATATCCACAAGGGTCCAAGAGCCTTGAACCCAGTCAAGCTGAAGAAGATGAAGCAGCAGCCAAAGATGGAGATGGTGCCCCTGAGCAGGGCCGGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

305

Amino Acids

33.32

Weight (kDa)

8.34

Isoelectric Point (pI)

53.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	102 - 143	5.8e-16	G-patch domain
G-patch_2	PF12656	105 - 146	6e-07	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	893
AccII	CGCG	4 cut(s)	63, 183, 354, 457
AclWI	GGATC	2 cut(s)	282, 803
AcoI	YGGCCR	1 cut(s)	723
AcsI	RAATTY	1 cut(s)	736
AcuI	CTGAAG	2 cut(s)	761, 879
AcyI	GRCGYC	1 cut(s)	463
AfaI	GTAC	2 cut(s)	580, 658
AfiI	CCNNNNNNNGG	5 cut(s)	405, 642, 713, 904, 905
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	3 cut(s)	395, 748, 845
AhlI	ACTAGT	1 cut(s)	575
AluBI	AGCT	3 cut(s)	214, 775, 857
AluI	AGCT	3 cut(s)	214, 775, 857
Alw26I	GTCTC	3 cut(s)	65, 138, 171
AlwI	GGATC	2 cut(s)	282, 803
AoxI	GGCC	3 cut(s)	407, 723, 907
ApeKI	GCWGC	5 cut(s)	186, 564, 607, 872, 875
ApoI	RAATTY	1 cut(s)	736
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	5 cut(s)	243, 408, 831, 907, 912
AsuC2I	CCSGG	1 cut(s)	637
AsuHPI	GGTGA	2 cut(s)	527, 697
AvaII	GGWCC	3 cut(s)	243, 831, 912
BaeGI	GKGCMC	1 cut(s)	898
BanI	GGYRCC	1 cut(s)	893
BanII	GRGCYC	2 cut(s)	228, 389
BbsI	GAAGAC	2 cut(s)	656, 709
BbvI	GCAGC	5 cut(s)	173, 576, 619, 884, 887
BccI	CCATC	6 cut(s)	331, 634, 682, 707, 878, 884
BceAI	ACGGC	3 cut(s)	166, 179, 233
BcgI	CGANNNNNNTGC	2 cut(s)	178, 212
BcnI	CCSGG	1 cut(s)	637
BcoDI	GTCTC	3 cut(s)	65, 138, 171
BcuI	ACTAGT	1 cut(s)	575
BfaI	CTAG	1 cut(s)	576
BglI	GCCNNNNNGGC	1 cut(s)	460
BlpI	GCTNAGC	1 cut(s)	450
Bme1390I	CCNGG	1 cut(s)	637
Bme18I	GGWCC	3 cut(s)	243, 831, 912
BmgT120I	GGNCC	5 cut(s)	243, 408, 831, 907, 912
BmiI	GGNNCC	4 cut(s)	157, 225, 832, 895
BmrFI	CCNGG	1 cut(s)	637
BmrI	ACTGGG	1 cut(s)	843
BmsI	GCATC	2 cut(s)	102, 321
BmuI	ACTGGG	1 cut(s)	843
BpiI	GAAGAC	2 cut(s)	656, 709
BplI	GAGNNNNNCTC	2 cut(s)	691, 723
BpmI	CTGGAG	2 cut(s)	142, 745
Bpu10I	CCTNAGC	1 cut(s)	900
Bpu1102I	GCTNAGC	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	752
BpuMI	CCSGG	1 cut(s)	637
Bsa29I	ATCGAT	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	463
BsaI	GGTCTC	2 cut(s)	65, 171
BsaJI	CCNNGG	4 cut(s)	75, 181, 455, 486
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	5 cut(s)	405, 642, 713, 904, 905
Bse118I	RCCGGY	1 cut(s)	909
Bse1I	ACTGG	2 cut(s)	627, 849
Bse3DI	GCAATG	1 cut(s)	794
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	4 cut(s)	75, 181, 455, 486
BseGI	GGATG	2 cut(s)	203, 645
BseLI	CCNNNNNNNGG	5 cut(s)	405, 642, 713, 904, 905
BseMI	GCAATG	1 cut(s)	794
BseMII	CTCAG	2 cut(s)	804, 891
BseNI	ACTGG	2 cut(s)	627, 849
BseRI	GAGGAG	2 cut(s)	103, 106
BseSI	GKGCMC	1 cut(s)	898
BseXI	GCAGC	5 cut(s)	173, 576, 619, 884, 887
BsgI	GTGCAG	1 cut(s)	515
Bsh1236I	CGCG	4 cut(s)	63, 183, 354, 457
BshFI	GGCC	3 cut(s)	409, 725, 909
BshNI	GGYRCC	1 cut(s)	893
BshVI	ATCGAT	1 cut(s)	21
BsiSI	CCGG	2 cut(s)	636, 910
BslFI	GGGAC	1 cut(s)	450
BslI	CCNNNNNNNGG	5 cut(s)	405, 642, 713, 904, 905
BsmAI	GTCTC	3 cut(s)	65, 138, 171
BsmFI	GGGAC	1 cut(s)	450
BsnI	GGCC	3 cut(s)	409, 725, 909
Bso31I	GGTCTC	2 cut(s)	65, 171
Bsp1286I	GDGCHC	3 cut(s)	228, 389, 898
Bsp143I	GATC	4 cut(s)	22, 274, 523, 808
Bsp1720I	GCTNAGC	1 cut(s)	450
BspANI	GGCC	3 cut(s)	409, 725, 909
BspCNI	CTCAG	2 cut(s)	805, 892
BspDI	ATCGAT	1 cut(s)	21
BspFNI	CGCG	4 cut(s)	63, 183, 354, 457
BspLI	GGNNCC	4 cut(s)	157, 225, 832, 895
BspPI	GGATC	2 cut(s)	282, 803
BspT107I	GGYRCC	1 cut(s)	893
BspTNI	GGTCTC	2 cut(s)	65, 171
BsrDI	GCAATG	1 cut(s)	794
BsrFI	RCCGGY	1 cut(s)	909
BsrI	ACTGG	2 cut(s)	627, 849
BssAI	RCCGGY	1 cut(s)	909
BssECI	CCNNGG	4 cut(s)	75, 181, 455, 486
BssMI	GATC	4 cut(s)	22, 274, 523, 808
BssNI	GRCGYC	1 cut(s)	463
BssT1I	CCWWGG	1 cut(s)	486
Bst4CI	ACNGT	2 cut(s)	269, 583
BstACI	GRCGYC	1 cut(s)	463
BstC8I	GCNNGC	2 cut(s)	38, 216
BstDEI	CTNAG	3 cut(s)	450, 813, 900
BstDSI	CCRYGG	2 cut(s)	181, 455
BstF5I	GGATG	2 cut(s)	203, 645
BstFNI	CGCG	4 cut(s)	63, 183, 354, 457
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	4 cut(s)	25, 277, 526, 811
BstMAI	GTCTC	3 cut(s)	65, 138, 171
BstMBI	GATC	4 cut(s)	22, 274, 523, 808
BstMWI	GCNNNNNNNGC	5 cut(s)	48, 360, 384, 460, 604
BstSCI	CCNGG	1 cut(s)	635
BstSLI	GKGCMC	1 cut(s)	898
BstUI	CGCG	4 cut(s)	63, 183, 354, 457
BstV1I	GCAGC	5 cut(s)	173, 576, 619, 884, 887
BstV2I	GAAGAC	2 cut(s)	656, 709
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	3 cut(s)	409, 725, 909
BsuTUI	ATCGAT	1 cut(s)	21
BtgI	CCRYGG	2 cut(s)	181, 455
BtsCI	GGATG	2 cut(s)	203, 645
BtsI	GCAGTG	1 cut(s)	789
BtsIMutI	CAGTG	3 cut(s)	588, 634, 789
Cac8I	GCNNGC	2 cut(s)	38, 216
CfoI	GCGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	909
Cfr13I	GGNCC	5 cut(s)	243, 408, 831, 907, 912
Cfr42I	CCGCGG	2 cut(s)	184, 458
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	4 cut(s)	52, 69, 360, 452
Csp6I	GTAC	2 cut(s)	579, 657
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	2 cut(s)	169, 319
CviQI	GTAC	2 cut(s)	579, 657
DdeI	CTNAG	3 cut(s)	450, 813, 900
DpnI	GATC	4 cut(s)	24, 276, 525, 810
DpnII	GATC	4 cut(s)	22, 274, 523, 808
EaeI	YGGCCR	1 cut(s)	723
EciI	GGCGGA	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	486
Eco24I	GRGCYC	2 cut(s)	228, 389
Eco31I	GGTCTC	2 cut(s)	65, 171
Eco47I	GGWCC	3 cut(s)	243, 831, 912
Eco57I	CTGAAG	2 cut(s)	761, 879
EcoT14I	CCWWGG	1 cut(s)	486
EcoT38I	GRGCYC	2 cut(s)	228, 389
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	2 cut(s)	172, 322
FaiI	YATR	7 cut(s)	170, 261, 320, 345, 698, 807, 820
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	2 cut(s)	168, 318
FokI	GGATG	2 cut(s)	190, 652
FriOI	GRGCYC	2 cut(s)	228, 389
FspBI	CTAG	1 cut(s)	576
GlaI	GCGC	1 cut(s)	41
GsuI	CTGGAG	2 cut(s)	142, 745
HaeIII	GGCC	3 cut(s)	409, 725, 909
HapII	CCGG	2 cut(s)	636, 910
HgaI	GACGC	4 cut(s)	52, 69, 360, 452
HhaI	GCGC	1 cut(s)	42
Hin1I	GRCGYC	1 cut(s)	463
Hin1II	CATG	2 cut(s)	172, 322
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	2 cut(s)	357, 717
HpaII	CCGG	2 cut(s)	636, 910
HphI	GGTGA	2 cut(s)	527, 697
Hpy188I	TCNGA	6 cut(s)	16, 59, 79, 121, 279, 780
Hpy188III	TCNNGA	6 cut(s)	159, 295, 710, 762, 812, 915
Hpy99I	CGWCG	5 cut(s)	63, 68, 134, 137, 200
HpyAV	CCTTC	4 cut(s)	74, 368, 413, 581
HpyCH4III	ACNGT	2 cut(s)	269, 583
HpyCH4V	TGCA	3 cut(s)	189, 496, 794
HpyF10VI	GCNNNNNNNGC	5 cut(s)	48, 360, 384, 460, 604
HpyF3I	CTNAG	3 cut(s)	450, 813, 900
Hsp92I	GRCGYC	1 cut(s)	463
Hsp92II	CATG	2 cut(s)	172, 322
HspAI	GCGC	1 cut(s)	40
KspI	CCGCGG	2 cut(s)	184, 458
Kzo9I	GATC	4 cut(s)	22, 274, 523, 808
LmnI	GCTCC	2 cut(s)	161, 223
Lsp1109I	GCAGC	5 cut(s)	173, 576, 619, 884, 887
LweI	GCATC	2 cut(s)	102, 321
MaeI	CTAG	1 cut(s)	576
MaeIII	GTNAC	1 cut(s)	515
MalI	GATC	4 cut(s)	24, 276, 525, 810
MboI	GATC	4 cut(s)	22, 274, 523, 808
MboII	GAAGA	7 cut(s)	88, 346, 658, 661, 714, 872, 875
MfeI	CAATTG	1 cut(s)	390
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	3 cut(s)	228, 389, 898
MluCI	AATT	4 cut(s)	390, 401, 621, 736
MluI	ACGCGT	1 cut(s)	61
MlyI	GAGTC	1 cut(s)	351
MmeI	TCCRAC	2 cut(s)	82, 144
MslI	CAYNNNNRTG	1 cut(s)	317
MspA1I	CMGCKG	2 cut(s)	183, 457
MspI	CCGG	2 cut(s)	636, 910
MspR9I	CCNGG	1 cut(s)	637
MunI	CAATTG	1 cut(s)	390
MvnI	CGCG	4 cut(s)	63, 183, 354, 457
MwoI	GCNNNNNNNGC	5 cut(s)	48, 360, 384, 460, 604
NciI	CCSGG	1 cut(s)	637
NdeII	GATC	4 cut(s)	22, 274, 523, 808
NlaIII	CATG	2 cut(s)	172, 322
NlaIV	GGNNCC	4 cut(s)	157, 225, 832, 895
NmeAIII	GCCGAG	1 cut(s)	339
NmuCI	GTSAC	1 cut(s)	515
PcsI	WCGNNNNNNNCGW	2 cut(s)	172, 366
PfeI	GAWTC	1 cut(s)	717
PleI	GAGTC	1 cut(s)	351
PpsI	GAGTC	1 cut(s)	351
PspN4I	GGNNCC	4 cut(s)	157, 225, 832, 895
PspPI	GGNCC	5 cut(s)	243, 408, 831, 907, 912
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	2 cut(s)	580, 658
RsaNI	GTAC	2 cut(s)	579, 657
RseI	CAYNNNNRTG	1 cut(s)	317
SacII	CCGCGG	2 cut(s)	184, 458
Sau3AI	GATC	4 cut(s)	22, 274, 523, 808
Sau96I	GGNCC	5 cut(s)	243, 408, 831, 907, 912
SchI	GAGTC	1 cut(s)	351
ScrFI	CCNGG	1 cut(s)	637
SduI	GDGCHC	3 cut(s)	228, 389, 898
SfaNI	GCATC	2 cut(s)	102, 321
Sfr303I	CCGCGG	2 cut(s)	184, 458
SgrBI	CCGCGG	2 cut(s)	184, 458
SinI	GGWCC	3 cut(s)	243, 831, 912
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	731
SmoI	CTYRAG	1 cut(s)	731
SpeI	ACTAGT	1 cut(s)	575
Sse9I	AATT	4 cut(s)	390, 401, 621, 736
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	1 cut(s)	576
StyD4I	CCNGG	1 cut(s)	635
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	2 cut(s)	269, 583
TaqI	TCGA	3 cut(s)	21, 294, 669
TasI	AATT	4 cut(s)	390, 401, 621, 736
TatI	WGTACW	2 cut(s)	578, 656
TauI	GCSGC	6 cut(s)	156, 186, 457, 460, 463, 635
TfiI	GAWTC	1 cut(s)	717
TscAI	CASTG	3 cut(s)	588, 634, 796
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	5 cut(s)	186, 564, 607, 872, 875
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	5 cut(s)	192, 335, 347, 432, 882
TspGWI	ACGGA	2 cut(s)	156, 363
TspRI	CASTG	3 cut(s)	588, 634, 796
VpaK11BI	GGWCC	3 cut(s)	243, 831, 912
XapI	RAATTY	1 cut(s)	736
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XspI	CTAG	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.