Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Forward (+)

38396639 .. 38397418

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00358310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGATTTGAGGTCTGAAATCGATCGCTGTTCTCGCAAGCGCAAGGAGAACAATCTCCGACGCGTCGTTGAGACCTCGGAAGGAAATCTCCGCATCTTCGCTCTCGCTTCCTCCTCCGACCACCACGACGACCACAACGGAGACAACGGCGGCTCCAGAAAACGCATGAGGCGAGACCGCGGCTGCAACGCCGTCGTTTCATCCACCAAGCTCGCCGTGGAGCCCACCAGACCCGTCAGGTCCGCCGTGAAACCCTATGAGGACGGTGGGGATCTGAATATTGGGGAGTTCGAGAAACACACAAAGGGCATCGGCATGAAATTGCTGATGAAGATGGGCTATAACGGACGCGGACTGGGGAAGAACGAGGAAGGTATTGTGAGCCCAATTGAAGCCGAATTGAGGCCCAAAAATGAAGGTCTTGGTTTTGATTACAAGGAGGGGGCTAAGCTGCGGCGGCGTCCCACATTGTTTGTGAAAGCCAAGGTGGTGCAGGAAAGTGTCGCTGCTGGTGACAATGATCACAAGAAGACCAAAACAGAAATAGCCAAAAAACCAAGCAGCCTAGACACTAGTACAGTGGAAGAACACAAGCCCAACGAGAAGCCTAAGGAGGCAATTACCAGTGCCGCCGGGATGGGGAAGAAGGCGAGTACAAAAGGTATCGATTTGCTGGAAAAGGTGATGGCTGAGATGAGAAGACCTCTTGATGGAATCTTGGCCGACTTTGAGAATTTGAGTTTGAAAGATACCAGCTCCAGGTGCATCTTAGCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

259

Amino Acids

28.65

Weight (kDa)

9.44

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	101 - 142	2.9e-16	G-patch domain
G-patch_2	PF12656	104 - 145	2.3e-07	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	63, 180, 351
AciI	CCGC	9 cut(s)	91, 150, 178, 180, 243, 351, 454, 457, 630
AclWI	GGATC	1 cut(s)	279
AcoI	YGGCCR	1 cut(s)	720
AcsI	RAATTY	1 cut(s)	733
AcyI	GRCGYC	1 cut(s)	460
AfaI	GTAC	2 cut(s)	577, 655
AfiI	CCNNNNNNNGG	4 cut(s)	402, 639, 710, 759
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	2 cut(s)	392, 745
AhlI	ACTAGT	1 cut(s)	572
AjnI	CCWGG	1 cut(s)	758
AluBI	AGCT	4 cut(s)	211, 451, 756, 773
AluI	AGCT	4 cut(s)	211, 451, 756, 773
Alw26I	GTCTC	3 cut(s)	65, 135, 168
AlwI	GGATC	1 cut(s)	279
AoxI	GGCC	2 cut(s)	404, 720
ApeKI	GCWGC	4 cut(s)	183, 451, 506, 561
ApoI	RAATTY	1 cut(s)	733
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	240, 405
AsuC2I	CCSGG	1 cut(s)	634
AsuHPI	GGTGA	2 cut(s)	524, 694
AvaII	GGWCC	1 cut(s)	240
AxyI	CCTNAGG	1 cut(s)	609
BanII	GRGCYC	2 cut(s)	225, 386
BbsI	GAAGAC	2 cut(s)	536, 706
BbvI	GCAGC	4 cut(s)	170, 438, 493, 573
BccI	CCATC	4 cut(s)	328, 631, 679, 704
BceAI	ACGGC	4 cut(s)	163, 176, 200, 230
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	1 cut(s)	760
BclI	TGATCA	1 cut(s)	520
BcnI	CCSGG	1 cut(s)	634
BcoDI	GTCTC	3 cut(s)	65, 135, 168
BcuI	ACTAGT	1 cut(s)	572
BfaI	CTAG	2 cut(s)	566, 573
BisI	GCNGC	9 cut(s)	151, 181, 184, 452, 455, 458, 507, 562, 630
BlpI	GCTNAGC	1 cut(s)	447
BlsI	GCNGC	9 cut(s)	152, 182, 185, 453, 456, 459, 508, 563, 631
Bme1390I	CCNGG	2 cut(s)	634, 760
Bme18I	GGWCC	1 cut(s)	240
BmgT120I	GGNCC	2 cut(s)	240, 405
BmiI	GGNNCC	2 cut(s)	154, 222
BmrFI	CCNGG	2 cut(s)	634, 760
BmrI	ACTGGG	1 cut(s)	365
BmsI	GCATC	3 cut(s)	102, 318, 774
BmuI	ACTGGG	1 cut(s)	365
BpiI	GAAGAC	2 cut(s)	536, 706
BplI	GAGNNNNNCTC	2 cut(s)	688, 720
BpmI	CTGGAG	2 cut(s)	139, 742
Bpu1102I	GCTNAGC	1 cut(s)	447
BpuMI	CCSGG	1 cut(s)	634
Bsa29I	ATCGAT	2 cut(s)	21, 666
BsaHI	GRCGYC	1 cut(s)	460
BsaI	GGTCTC	2 cut(s)	65, 168
BsaJI	CCNNGG	4 cut(s)	75, 178, 216, 483
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	4 cut(s)	402, 639, 710, 759
Bse1I	ACTGG	2 cut(s)	360, 624
Bse21I	CCTNAGG	1 cut(s)	609
BseBI	CCWGG	1 cut(s)	760
BseCI	ATCGAT	2 cut(s)	21, 666
BseDI	CCNNGG	4 cut(s)	75, 178, 216, 483
BseGI	GGATG	2 cut(s)	200, 642
BseLI	CCNNNNNNNGG	4 cut(s)	402, 639, 710, 759
BseMII	CTCAG	1 cut(s)	681
BseNI	ACTGG	2 cut(s)	360, 624
BseRI	GAGGAG	1 cut(s)	103
BseXI	GCAGC	4 cut(s)	170, 438, 493, 573
BsgI	GTGCAG	1 cut(s)	512
Bsh1236I	CGCG	3 cut(s)	63, 180, 351
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	2 cut(s)	406, 722
BshVI	ATCGAT	2 cut(s)	21, 666
BsiEI	CGRYCG	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	633
BslFI	GGGAC	1 cut(s)	447
BslI	CCNNNNNNNGG	4 cut(s)	402, 639, 710, 759
BsmAI	GTCTC	3 cut(s)	65, 135, 168
BsmFI	GGGAC	1 cut(s)	447
BsnI	GGCC	2 cut(s)	406, 722
Bso31I	GGTCTC	2 cut(s)	65, 168
Bsp1286I	GDGCHC	2 cut(s)	225, 386
Bsp143I	GATC	3 cut(s)	22, 271, 520
Bsp1720I	GCTNAGC	1 cut(s)	447
BspACI	CCGC	9 cut(s)	91, 150, 178, 180, 243, 351, 454, 457, 630
BspANI	GGCC	2 cut(s)	406, 722
BspCNI	CTCAG	1 cut(s)	682
BspDI	ATCGAT	2 cut(s)	21, 666
BspFNI	CGCG	3 cut(s)	63, 180, 351
BspLI	GGNNCC	2 cut(s)	154, 222
BspPI	GGATC	1 cut(s)	279
BspTNI	GGTCTC	2 cut(s)	65, 168
BsrI	ACTGG	2 cut(s)	360, 624
BssECI	CCNNGG	4 cut(s)	75, 178, 216, 483
BssMI	GATC	3 cut(s)	22, 271, 520
BssNI	GRCGYC	1 cut(s)	460
BssT1I	CCWWGG	1 cut(s)	483
Bst2UI	CCWGG	1 cut(s)	760
Bst4CI	ACNGT	2 cut(s)	266, 580
BstACI	GRCGYC	1 cut(s)	460
BstC8I	GCNNGC	2 cut(s)	38, 213
BstDEI	CTNAG	4 cut(s)	447, 609, 690, 769
BstDSI	CCRYGG	2 cut(s)	178, 216
BstF5I	GGATG	2 cut(s)	200, 642
BstFNI	CGCG	3 cut(s)	63, 180, 351
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	3 cut(s)	25, 274, 523
BstMAI	GTCTC	3 cut(s)	65, 135, 168
BstMBI	GATC	3 cut(s)	22, 271, 520
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 457, 762
BstNI	CCWGG	1 cut(s)	760
BstSCI	CCNGG	2 cut(s)	632, 758
BstUI	CGCG	3 cut(s)	63, 180, 351
BstV1I	GCAGC	4 cut(s)	170, 438, 493, 573
BstV2I	GAAGAC	2 cut(s)	536, 706
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
Bsu15I	ATCGAT	2 cut(s)	21, 666
Bsu36I	CCTNAGG	1 cut(s)	609
BsuRI	GGCC	2 cut(s)	406, 722
BsuTUI	ATCGAT	2 cut(s)	21, 666
BtgI	CCRYGG	2 cut(s)	178, 216
BtsCI	GGATG	2 cut(s)	200, 642
BtsIMutI	CAGTG	2 cut(s)	585, 631
Cac8I	GCNNGC	2 cut(s)	38, 213
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	2 cut(s)	240, 405
Cfr42I	CCGCGG	1 cut(s)	181
ClaI	ATCGAT	2 cut(s)	21, 666
CseI	GACGC	4 cut(s)	52, 69, 357, 449
Csp6I	GTAC	2 cut(s)	576, 654
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviAII	CATG	2 cut(s)	166, 316
CviQI	GTAC	2 cut(s)	576, 654
DdeI	CTNAG	4 cut(s)	447, 609, 690, 769
DpnI	GATC	3 cut(s)	24, 273, 522
DpnII	GATC	3 cut(s)	22, 271, 520
EaeI	YGGCCR	1 cut(s)	720
EciI	GGCGGA	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	483
Eco24I	GRGCYC	2 cut(s)	225, 386
Eco31I	GGTCTC	2 cut(s)	65, 168
Eco47I	GGWCC	1 cut(s)	240
Eco81I	CCTNAGG	1 cut(s)	609
EcoRII	CCWGG	1 cut(s)	758
EcoT14I	CCWWGG	1 cut(s)	483
EcoT38I	GRGCYC	2 cut(s)	225, 386
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	2 cut(s)	169, 319
FaiI	YATR	5 cut(s)	167, 258, 317, 342, 776
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	2 cut(s)	165, 315
FbaI	TGATCA	1 cut(s)	520
Fnu4HI	GCNGC	9 cut(s)	151, 181, 184, 452, 455, 458, 507, 562, 630
FokI	GGATG	2 cut(s)	187, 649
FriOI	GRGCYC	2 cut(s)	225, 386
Fsp4HI	GCNGC	9 cut(s)	151, 181, 184, 452, 455, 458, 507, 562, 630
FspBI	CTAG	2 cut(s)	566, 573
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	9 cut(s)	151, 181, 184, 452, 455, 458, 507, 562, 630
GsuI	CTGGAG	2 cut(s)	139, 742
HaeIII	GGCC	2 cut(s)	406, 722
HapII	CCGG	1 cut(s)	633
HgaI	GACGC	4 cut(s)	52, 69, 357, 449
HhaI	GCGC	1 cut(s)	42
Hin1I	GRCGYC	1 cut(s)	460
Hin1II	CATG	2 cut(s)	169, 319
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	1 cut(s)	714
HpaII	CCGG	1 cut(s)	633
HphI	GGTGA	2 cut(s)	524, 694
Hpy188I	TCNGA	5 cut(s)	16, 59, 79, 118, 276
Hpy188III	TCNNGA	3 cut(s)	156, 292, 707
Hpy99I	CGWCG	4 cut(s)	63, 68, 131, 197
HpyAV	CCTTC	4 cut(s)	74, 365, 410, 640
HpyCH4III	ACNGT	2 cut(s)	266, 580
HpyCH4V	TGCA	3 cut(s)	186, 493, 765
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 457, 762
HpyF3I	CTNAG	4 cut(s)	447, 609, 690, 769
Hsp92I	GRCGYC	1 cut(s)	460
Hsp92II	CATG	2 cut(s)	169, 319
HspAI	GCGC	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	520
KspI	CCGCGG	1 cut(s)	181
Kzo9I	GATC	3 cut(s)	22, 271, 520
LmnI	GCTCC	3 cut(s)	158, 220, 761
Lsp1109I	GCAGC	4 cut(s)	170, 438, 493, 573
LweI	GCATC	3 cut(s)	102, 318, 774
MaeI	CTAG	2 cut(s)	566, 573
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	3 cut(s)	24, 273, 522
MboI	GATC	3 cut(s)	22, 271, 520
MboII	GAAGA	7 cut(s)	88, 343, 373, 541, 596, 655, 711
MfeI	CAATTG	1 cut(s)	387
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	2 cut(s)	225, 386
MluCI	AATT	5 cut(s)	320, 387, 398, 618, 733
MluI	ACGCGT	1 cut(s)	61
MmeI	TCCRAC	2 cut(s)	82, 141
MslI	CAYNNNNRTG	1 cut(s)	314
MspA1I	CMGCKG	1 cut(s)	180
MspI	CCGG	1 cut(s)	633
MspR9I	CCNGG	2 cut(s)	634, 760
MunI	CAATTG	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	760
MvnI	CGCG	3 cut(s)	63, 180, 351
MwoI	GCNNNNNNNGC	3 cut(s)	33, 457, 762
NciI	CCSGG	1 cut(s)	634
NdeII	GATC	3 cut(s)	22, 271, 520
NlaIII	CATG	2 cut(s)	169, 319
NlaIV	GGNNCC	2 cut(s)	154, 222
NmuCI	GTSAC	1 cut(s)	512
PcsI	WCGNNNNNNNCGW	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	714
PkrI	GCNGC	9 cut(s)	152, 182, 185, 453, 456, 459, 508, 563, 631
Ple19I	CGATCG	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	758
PspGI	CCWGG	1 cut(s)	758
PspN4I	GGNNCC	2 cut(s)	154, 222
PspPI	GGNCC	2 cut(s)	240, 405
PsuI	RGATCY	1 cut(s)	271
PvuI	CGATCG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	577, 655
RsaNI	GTAC	2 cut(s)	576, 654
RseI	CAYNNNNRTG	1 cut(s)	314
SacII	CCGCGG	1 cut(s)	181
SatI	GCNGC	9 cut(s)	151, 181, 184, 452, 455, 458, 507, 562, 630
Sau3AI	GATC	3 cut(s)	22, 271, 520
Sau96I	GGNCC	2 cut(s)	240, 405
ScrFI	CCNGG	2 cut(s)	634, 760
SduI	GDGCHC	2 cut(s)	225, 386
SfaNI	GCATC	3 cut(s)	102, 318, 774
Sfr303I	CCGCGG	1 cut(s)	181
SgrBI	CCGCGG	1 cut(s)	181
SinI	GGWCC	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	314
SpeI	ACTAGT	1 cut(s)	572
Sse9I	AATT	5 cut(s)	320, 387, 398, 618, 733
SsiI	CCGC	9 cut(s)	91, 150, 178, 180, 243, 351, 454, 457, 630
SspI	AATATT	1 cut(s)	280
SspMI	CTAG	2 cut(s)	566, 573
StyD4I	CCNGG	2 cut(s)	632, 758
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	2 cut(s)	266, 580
TaqI	TCGA	3 cut(s)	21, 291, 666
TasI	AATT	5 cut(s)	320, 387, 398, 618, 733
TatI	WGTACW	2 cut(s)	575, 653
TauI	GCSGC	5 cut(s)	153, 183, 457, 460, 632
TfiI	GAWTC	1 cut(s)	714
TscAI	CASTG	2 cut(s)	585, 631
TseFI	GTSAC	1 cut(s)	512
TseI	GCWGC	4 cut(s)	183, 451, 506, 561
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	4 cut(s)	189, 332, 344, 429
TspGWI	ACGGA	2 cut(s)	153, 360
TspRI	CASTG	2 cut(s)	585, 631
VpaK11BI	GGWCC	1 cut(s)	240
XapI	RAATTY	1 cut(s)	733
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XspI	CTAG	2 cut(s)	566, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.