Rh4DG183000

tuftelin-interacting protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
36272684 .. 36278840
6157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG183000.1

Sequence Viewer

Length: 843 bp
ATGGATTTGAGATCTGAAATCGAGAGGCTCTGCAGATCTGAATCTGGTCTGAGATCGATGGATTTGAGATCTGAAATCGATCGCCTTTCTCGCAAGCGCAAGGAGGACAATCTCCGACGCGTCGTTGAGACCTCGGAAGGAAATCTCCGCATCTTCGCTCTCGCTTCCTCCTCCTCCTCCGACCACGACGTCGACGAAGGAGACAACGGCGGCTCCAGAAAACGCGTGAGGCGAGACCGCGGCTGCAACGCCGTCGTTTCATCCACCAAGCTCGCCGCGGAGCCCACCAGGCCCGTCAGATCCGCCGTGAAACCCTATGACGACGGTGGGGATCTGAATATTGGGGAGTTCGAGAAACACACGAGGGGCATCGGCATGAAATTGCAGATGAAGATGGGCTATAACGGACGTGGACTCGGCAAAAACGAGGAAGGTATTGAAGCCGAATTGAGGTCCAAAAATGAAGGTCTTGGTTTTGATTACAAGGAGGGGACTAAGCTGCGGCGGCGGCCCACATCGTTTGTGAAAGCCAACGTGGTGCACAAAAGTGTTGCTGCTGGTGACAATGATCACAAGAAGAGCAAAACAGAAATGACCAAAAAACCAAGCAGCCTAAACGCTAGTACAGTGGAAGAACACAAGCCCCACAAGCAGCCGCAGCGGCCTAATGAGGCAATTACCGGTGCCGCCGCCACCGGGATGGAGAAGAAGTCGACCACCAAAGGTGTCGATTTGCTGGGAAAGGTGATGGCTGATATGAGAAGACCTCTTGATGGAATCTTGGCCGACTTTGAGAATCTGAGTTTGATAGACAACAGCTCCAGGTGCATCTTAGCTATGTAA

Protein Analysis

280

Amino Acids

30.98

Weight (kDa)

9.49

Isoelectric Point (pI)

62.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 121 - 158 5.9e-07 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
AatII GACGTC 1 cut(s) 192
AccB1I GGYRCC 1 cut(s) 683
AccI GTMKAC 2 cut(s) 192, 713
AccII CGCG 4 cut(s) 120, 225, 240, 278
AclWI GGATC 2 cut(s) 294, 339
AcoI YGGCCR 1 cut(s) 783
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 1 cut(s) 625
AfiI CCNNNNNNNGG 3 cut(s) 450, 696, 773
AflIII ACRYGT 2 cut(s) 118, 223
AgeI ACCGGT 1 cut(s) 680
AgsI TTSAA 1 cut(s) 440
AjiI CACGTC 1 cut(s) 410
AjnI CCWGG 2 cut(s) 287, 821
AleI CACNNNNGTG 1 cut(s) 546
AluBI AGCT 4 cut(s) 271, 499, 819, 836
AluI AGCT 4 cut(s) 271, 499, 819, 836
Alw21I GWGCWC 1 cut(s) 543
Alw26I GTCTC 3 cut(s) 122, 195, 228
Alw44I GTGCAC 1 cut(s) 539
AlwI GGATC 2 cut(s) 294, 339
AoxI GGCC 4 cut(s) 290, 509, 662, 783
ApaLI GTGCAC 1 cut(s) 539
ApeKI GCWGC 6 cut(s) 243, 499, 554, 609, 652, 658
AsiGI ACCGGT 1 cut(s) 680
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 3 cut(s) 291, 453, 510
AsuC2I CCSGG 1 cut(s) 697
AsuHPI GGTGA 2 cut(s) 572, 757
AvaII GGWCC 1 cut(s) 453
BaeGI GKGCMC 1 cut(s) 543
BanI GGYRCC 1 cut(s) 683
BanII GRGCYC 1 cut(s) 285
BauI CACGAG 1 cut(s) 361
BbsI GAAGAC 1 cut(s) 769
Bbv12I GWGCWC 1 cut(s) 543
BbvI GCAGC 6 cut(s) 230, 486, 541, 621, 664, 670
BccI CCATC 5 cut(s) 52, 388, 694, 742, 767
BceAI ACGGC 3 cut(s) 223, 236, 290
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BciT130I CCWGG 2 cut(s) 289, 823
BclI TGATCA 1 cut(s) 568
BcnI CCSGG 1 cut(s) 697
BcoDI GTCTC 3 cut(s) 122, 195, 228
BfaI CTAG 1 cut(s) 621
BfmI CTRYAG 1 cut(s) 31
BglI GCCNNNNNGGC 2 cut(s) 289, 661
BglII AGATCT 3 cut(s) 11, 35, 68
Bme1390I CCNGG 3 cut(s) 289, 697, 823
Bme18I GGWCC 1 cut(s) 453
BmgBI CACGTC 1 cut(s) 410
BmgT120I GGNCC 3 cut(s) 291, 453, 510
BmiI GGNNCC 3 cut(s) 214, 282, 685
BmrFI CCNGG 3 cut(s) 289, 697, 823
BmsI GCATC 3 cut(s) 159, 378, 837
BpiI GAAGAC 1 cut(s) 769
BplI GAGNNNNNCTC 2 cut(s) 751, 783
BpmI CTGGAG 2 cut(s) 199, 805
BpuMI CCSGG 1 cut(s) 697
Bsa29I ATCGAT 2 cut(s) 56, 78
BsaBI GATNNNNATC 1 cut(s) 40
BsaHI GRCGYC 1 cut(s) 189
BsaI GGTCTC 2 cut(s) 122, 228
BsaJI CCNNGG 3 cut(s) 132, 238, 276
BsaWI WCCGGW 1 cut(s) 680
BsaXI ACNNNNNCTCC 6 cut(s) 197, 227, 695, 725, 803, 833
Bsc4I CCNNNNNNNGG 3 cut(s) 450, 696, 773
Bse118I RCCGGY 1 cut(s) 680
Bse8I GATNNNNATC 1 cut(s) 40
BseBI CCWGG 2 cut(s) 289, 823
BseCI ATCGAT 2 cut(s) 56, 78
BseDI CCNNGG 3 cut(s) 132, 238, 276
BseGI GGATG 2 cut(s) 260, 705
BseJI GATNNNNATC 1 cut(s) 40
BseLI CCNNNNNNNGG 3 cut(s) 450, 696, 773
BseMII CTCAG 2 cut(s) 41, 791
BseRI GAGGAG 3 cut(s) 160, 163, 166
BseSI GKGCMC 1 cut(s) 543
BseXI GCAGC 6 cut(s) 230, 486, 541, 621, 664, 670
BseYI CCCAGC 1 cut(s) 736
Bsh1236I CGCG 4 cut(s) 120, 225, 240, 278
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 4 cut(s) 292, 511, 664, 785
BshNI GGYRCC 1 cut(s) 683
BshTI ACCGGT 1 cut(s) 680
BshVI ATCGAT 2 cut(s) 56, 78
BsiEI CGRYCG 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 543
BsiSI CCGG 2 cut(s) 681, 696
BslFI GGGAC 1 cut(s) 505
BslI CCNNNNNNNGG 3 cut(s) 450, 696, 773
BsmAI GTCTC 3 cut(s) 122, 195, 228
BsmFI GGGAC 1 cut(s) 505
BsnI GGCC 4 cut(s) 292, 511, 664, 785
Bso31I GGTCTC 2 cut(s) 122, 228
Bsp1286I GDGCHC 2 cut(s) 285, 543
Bsp143I GATC 8 cut(s) 11, 35, 53, 68, 79, 299, 331, 568
BspANI GGCC 4 cut(s) 292, 511, 664, 785
BspCNI CTCAG 2 cut(s) 42, 792
BspDI ATCGAT 2 cut(s) 56, 78
BspFNI CGCG 4 cut(s) 120, 225, 240, 278
BspLI GGNNCC 3 cut(s) 214, 282, 685
BspMAI CTGCAG 1 cut(s) 35
BspPI GGATC 2 cut(s) 294, 339
BspQI GCTCTTC 1 cut(s) 572
BspT107I GGYRCC 1 cut(s) 683
BspTNI GGTCTC 2 cut(s) 122, 228
BsrFI RCCGGY 1 cut(s) 680
BssAI RCCGGY 1 cut(s) 680
BssECI CCNNGG 3 cut(s) 132, 238, 276
BssMI GATC 8 cut(s) 11, 35, 53, 68, 79, 299, 331, 568
BssNI GRCGYC 1 cut(s) 189
BssSI CACGAG 1 cut(s) 361
Bst2BI CACGAG 1 cut(s) 361
Bst2UI CCWGG 2 cut(s) 289, 823
Bst4CI ACNGT 2 cut(s) 326, 628
Bst6I CTCTTC 1 cut(s) 572
BstACI GRCGYC 1 cut(s) 189
BstC8I GCNNGC 2 cut(s) 95, 273
BstDEI CTNAG 4 cut(s) 50, 495, 800, 832
BstDSI CCRYGG 2 cut(s) 238, 276
BstF5I GGATG 2 cut(s) 260, 705
BstFNI CGCG 4 cut(s) 120, 225, 240, 278
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 8 cut(s) 14, 38, 56, 71, 82, 302, 334, 571
BstMAI GTCTC 3 cut(s) 122, 195, 228
BstMBI GATC 8 cut(s) 11, 35, 53, 68, 79, 299, 331, 568
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 8 cut(s) 90, 289, 505, 508, 649, 658, 661, 825
BstNI CCWGG 2 cut(s) 289, 823
BstSCI CCNGG 3 cut(s) 287, 695, 821
BstSFI CTRYAG 1 cut(s) 31
BstSLI GKGCMC 1 cut(s) 543
BstUI CGCG 4 cut(s) 120, 225, 240, 278
BstV1I GCAGC 6 cut(s) 230, 486, 541, 621, 664, 670
BstV2I GAAGAC 1 cut(s) 769
BstX2I RGATCY 5 cut(s) 11, 35, 68, 299, 331
BstXI CCANNNNNNTGG 1 cut(s) 700
BstYI RGATCY 5 cut(s) 11, 35, 68, 299, 331
Bsu15I ATCGAT 2 cut(s) 56, 78
BsuRI GGCC 4 cut(s) 292, 511, 664, 785
BsuTUI ATCGAT 2 cut(s) 56, 78
BtgI CCRYGG 2 cut(s) 238, 276
BtrI CACGTC 1 cut(s) 410
BtsCI GGATG 2 cut(s) 260, 705
BtsIMutI CAGTG 1 cut(s) 633
Cac8I GCNNGC 2 cut(s) 95, 273
CfoI GCGC 1 cut(s) 99
Cfr10I RCCGGY 1 cut(s) 680
Cfr13I GGNCC 3 cut(s) 291, 453, 510
Cfr42I CCGCGG 2 cut(s) 241, 279
ClaI ATCGAT 2 cut(s) 56, 78
CseI GACGC 2 cut(s) 109, 126
Csp6I GTAC 1 cut(s) 624
CspAI ACCGGT 1 cut(s) 680
CspCI CAANNNNNGTGG 2 cut(s) 502, 537
CviAII CATG 1 cut(s) 376
CviQI GTAC 1 cut(s) 624
DdeI CTNAG 4 cut(s) 50, 495, 800, 832
DpnI GATC 8 cut(s) 13, 37, 55, 70, 81, 301, 333, 570
DpnII GATC 8 cut(s) 11, 35, 53, 68, 79, 299, 331, 568
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 783
Eam1104I CTCTTC 1 cut(s) 572
EarI CTCTTC 1 cut(s) 572
EciI GGCGGA 1 cut(s) 292
Eco24I GRGCYC 1 cut(s) 285
Eco31I GGTCTC 2 cut(s) 122, 228
Eco47I GGWCC 1 cut(s) 453
EcoRII CCWGG 2 cut(s) 287, 821
EcoT38I GRGCYC 1 cut(s) 285
FaeI CATG 1 cut(s) 379
FaiI YATR 5 cut(s) 318, 377, 402, 758, 839
FaqI GGGAC 1 cut(s) 505
FatI CATG 1 cut(s) 375
FbaI TGATCA 1 cut(s) 568
FblI GTMKAC 2 cut(s) 192, 713
FokI GGATG 2 cut(s) 247, 712
FriOI GRGCYC 1 cut(s) 285
FspBI CTAG 1 cut(s) 621
GlaI GCGC 1 cut(s) 98
GsaI CCCAGC 1 cut(s) 740
GsuI CTGGAG 2 cut(s) 199, 805
HaeIII GGCC 4 cut(s) 292, 511, 664, 785
HapII CCGG 2 cut(s) 681, 696
HgaI GACGC 2 cut(s) 109, 126
HhaI GCGC 1 cut(s) 99
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 1 cut(s) 379
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HincII GTYRAC 2 cut(s) 193, 714
HindII GTYRAC 2 cut(s) 193, 714
HinfI GANTC 4 cut(s) 41, 414, 777, 796
HpaII CCGG 2 cut(s) 681, 696
HphI GGTGA 2 cut(s) 572, 757
Hpy166II GTNNAC 4 cut(s) 193, 413, 541, 714
Hpy188III TCNNGA 4 cut(s) 22, 216, 352, 770
Hpy8I GTNNAC 4 cut(s) 193, 413, 541, 714
Hpy99I CGWCG 7 cut(s) 120, 125, 191, 194, 197, 257, 326
HpyAV CCTTC 4 cut(s) 131, 191, 425, 458
HpyCH4III ACNGT 2 cut(s) 326, 628
HpyCH4IV ACGT 3 cut(s) 189, 409, 534
HpyCH4V TGCA 5 cut(s) 33, 246, 385, 541, 828
HpyF10VI GCNNNNNNNGC 8 cut(s) 90, 289, 505, 508, 649, 658, 661, 825
HpyF3I CTNAG 4 cut(s) 50, 495, 800, 832
HpySE526I ACGT 3 cut(s) 189, 409, 534
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 1 cut(s) 379
HspAI GCGC 1 cut(s) 97
Ksp22I TGATCA 1 cut(s) 568
KspI CCGCGG 2 cut(s) 241, 279
Kzo9I GATC 8 cut(s) 11, 35, 53, 68, 79, 299, 331, 568
LguI GCTCTTC 1 cut(s) 572
LmnI GCTCC 3 cut(s) 218, 280, 824
Lsp1109I GCAGC 6 cut(s) 230, 486, 541, 621, 664, 670
LweI GCATC 3 cut(s) 159, 378, 837
MaeI CTAG 1 cut(s) 621
MaeII ACGT 3 cut(s) 189, 409, 534
MaeIII GTNAC 1 cut(s) 560
MalI GATC 8 cut(s) 13, 37, 55, 70, 81, 301, 333, 570
MboI GATC 8 cut(s) 11, 35, 53, 68, 79, 299, 331, 568
MboII GAAGA 6 cut(s) 145, 403, 589, 644, 718, 774
MflI RGATCY 5 cut(s) 11, 35, 68, 299, 331
MhlI GDGCHC 2 cut(s) 285, 543
MluCI AATT 3 cut(s) 380, 446, 675
MluI ACGCGT 2 cut(s) 118, 223
MlyI GAGTC 1 cut(s) 408
MmeI TCCRAC 2 cut(s) 139, 204
MslI CAYNNNNRTG 3 cut(s) 374, 546, 698
MspA1I CMGCKG 3 cut(s) 240, 278, 661
MspI CCGG 2 cut(s) 681, 696
MspR9I CCNGG 3 cut(s) 289, 697, 823
MvaI CCWGG 2 cut(s) 289, 823
MvnI CGCG 4 cut(s) 120, 225, 240, 278
MwoI GCNNNNNNNGC 8 cut(s) 90, 289, 505, 508, 649, 658, 661, 825
NciI CCSGG 1 cut(s) 697
NdeII GATC 8 cut(s) 11, 35, 53, 68, 79, 299, 331, 568
NlaIII CATG 1 cut(s) 379
NlaIV GGNNCC 3 cut(s) 214, 282, 685
NmeAIII GCCGAG 1 cut(s) 396
NmuCI GTSAC 1 cut(s) 560
OliI CACNNNNGTG 1 cut(s) 546
PciSI GCTCTTC 1 cut(s) 572
PcsI WCGNNNNNNNCGW 3 cut(s) 192, 229, 423
PfeI GAWTC 3 cut(s) 41, 777, 796
PinAI ACCGGT 1 cut(s) 680
Ple19I CGATCG 1 cut(s) 82
PleI GAGTC 1 cut(s) 408
PpsI GAGTC 1 cut(s) 408
Psp6I CCWGG 2 cut(s) 287, 821
PspFI CCCAGC 1 cut(s) 736
PspGI CCWGG 2 cut(s) 287, 821
PspN4I GGNNCC 3 cut(s) 214, 282, 685
PspPI GGNCC 3 cut(s) 291, 453, 510
PstI CTGCAG 1 cut(s) 35
PsuI RGATCY 5 cut(s) 11, 35, 68, 299, 331
PvuI CGATCG 1 cut(s) 82
RsaI GTAC 1 cut(s) 625
RsaNI GTAC 1 cut(s) 624
RseI CAYNNNNRTG 3 cut(s) 374, 546, 698
SacII CCGCGG 2 cut(s) 241, 279
SalI GTCGAC 2 cut(s) 191, 712
SapI GCTCTTC 1 cut(s) 572
Sau3AI GATC 8 cut(s) 11, 35, 53, 68, 79, 299, 331, 568
Sau96I GGNCC 3 cut(s) 291, 453, 510
SchI GAGTC 1 cut(s) 408
ScrFI CCNGG 3 cut(s) 289, 697, 823
SduI GDGCHC 2 cut(s) 285, 543
SfaNI GCATC 3 cut(s) 159, 378, 837
SfcI CTRYAG 1 cut(s) 31
Sfr303I CCGCGG 2 cut(s) 241, 279
SgrBI CCGCGG 2 cut(s) 241, 279
SgrDI CGTCGACG 1 cut(s) 191
SinI GGWCC 1 cut(s) 453
SmiMI CAYNNNNRTG 3 cut(s) 374, 546, 698
Sse9I AATT 3 cut(s) 380, 446, 675
SspI AATATT 1 cut(s) 340
SspMI CTAG 1 cut(s) 621
StyD4I CCNGG 3 cut(s) 287, 695, 821
TaaI ACNGT 2 cut(s) 326, 628
TaiI ACGT 3 cut(s) 192, 412, 537
TaqI TCGA 7 cut(s) 21, 56, 78, 192, 351, 713, 729
TasI AATT 3 cut(s) 380, 446, 675
TatI WGTACW 1 cut(s) 623
TfiI GAWTC 3 cut(s) 41, 777, 796
TscAI CASTG 1 cut(s) 633
TseFI GTSAC 1 cut(s) 560
TseI GCWGC 6 cut(s) 243, 499, 554, 609, 652, 658
Tsp45I GTSAC 1 cut(s) 560
TspDTI ATGAA 4 cut(s) 249, 392, 404, 477
TspGWI ACGGA 1 cut(s) 420
TspRI CASTG 1 cut(s) 633
VneI GTGCAC 1 cut(s) 539
VpaK11BI GGWCC 1 cut(s) 453
XmiI GTMKAC 2 cut(s) 192, 713
XspI CTAG 1 cut(s) 621
ZraI GACGTC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.