Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006138.1

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Forward (+)

28447 .. 29205

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006138.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

atggatttgagatctgaaatcgatcgcctttctcgcaagcgcaaggaggacaatctccgacgcgtcgttgagacctccgaaggaaatctccgcatcttcgctctcgcttcctcctccgaccacgacgtcgacgaaggagacaacggcggctccagaaaacgcatgaggcgagaccgcggctgcaacgccgtcgtttcatccaccaagctcgccgcggagcccaccaggcccgtcagatctgctgtgaaaccctatgacgacggtggggatctgaataaacacacgaggggcatcggcatgaaattgcagatgaagatgggctataacggacgtggactcggcaaaatcgaggaaggtattgaagccgaattgaggtccaaaaatgaaggtcttggttttgattacaaggaggggactaagctgctgcggcggcggcccacatcgtttgtgaaagccgaggtggtgcacaaaagtgtcgctgctggtgacaatgatcacaagaagagcaaaacagaaataaccaaaaaaccaagcagcctagacactagtacagtggaagaacacaagcccaacgagcagcctaatgaggcaattaccagtgccgccgccaccgggatggagaagaagacgattaccaaaggtgtcgatttgctgggaaaggtgatggctgatatgagaagacctcttgatggaatcttggccgactttgagaacttgagtttgaaaggtaccagctccacgtgcatcttagctatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

252

Amino Acids

27.73

Weight (kDa)

9.39

Isoelectric Point (pI)

51.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	125
AatII	GACGTC	1 cut(s)	129
Acc65I	GGTACC	1 cut(s)	728
AccB1I	GGYRCC	1 cut(s)	728
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	3 cut(s)	63, 177, 215
AclWI	GGATC	1 cut(s)	276
AcoI	YGGCCR	1 cut(s)	699
AcvI	CACGTG	1 cut(s)	741
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	2 cut(s)	550, 730
AfiI	CCNNNNNNNGG	3 cut(s)	372, 612, 689
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	2 cut(s)	362, 724
AhlI	ACTAGT	1 cut(s)	545
AjiI	CACGTC	1 cut(s)	332
AjnI	CCWGG	1 cut(s)	224
AleI	CACNNNNGTG	1 cut(s)	471
AluBI	AGCT	4 cut(s)	208, 421, 735, 752
AluI	AGCT	4 cut(s)	208, 421, 735, 752
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	3 cut(s)	65, 132, 165
Alw44I	GTGCAC	1 cut(s)	464
AlwI	GGATC	1 cut(s)	276
AoxI	GGCC	3 cut(s)	227, 434, 699
ApaLI	GTGCAC	1 cut(s)	464
ApeKI	GCWGC	6 cut(s)	180, 421, 424, 479, 534, 577
Asp718I	GGTACC	1 cut(s)	728
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	3 cut(s)	228, 375, 435
AsuC2I	CCSGG	1 cut(s)	613
AsuHPI	GGTGA	2 cut(s)	497, 673
AvaII	GGWCC	1 cut(s)	375
BaeGI	GKGCMC	1 cut(s)	468
BanI	GGYRCC	1 cut(s)	728
BanII	GRGCYC	1 cut(s)	222
BauI	CACGAG	1 cut(s)	283
BbrPI	CACGTG	1 cut(s)	741
BbsI	GAAGAC	2 cut(s)	632, 685
Bbv12I	GWGCWC	1 cut(s)	468
BbvI	GCAGC	6 cut(s)	167, 408, 411, 466, 546, 589
BccI	CCATC	4 cut(s)	310, 610, 658, 683
BceAI	ACGGC	2 cut(s)	160, 173
BcgI	CGANNNNNNTGC	2 cut(s)	172, 206
BciT130I	CCWGG	1 cut(s)	226
BclI	TGATCA	1 cut(s)	493
BcnI	CCSGG	1 cut(s)	613
BcoDI	GTCTC	3 cut(s)	65, 132, 165
BcuI	ACTAGT	1 cut(s)	545
BfaI	CTAG	2 cut(s)	539, 546
BglI	GCCNNNNNGGC	1 cut(s)	226
BglII	AGATCT	2 cut(s)	11, 236
Bme1390I	CCNGG	2 cut(s)	226, 613
Bme18I	GGWCC	1 cut(s)	375
BmgBI	CACGTC	1 cut(s)	332
BmgT120I	GGNCC	3 cut(s)	228, 375, 435
BmiI	GGNNCC	3 cut(s)	151, 219, 730
BmrFI	CCNGG	2 cut(s)	226, 613
BmsI	GCATC	3 cut(s)	102, 300, 753
BpiI	GAAGAC	2 cut(s)	632, 685
BplI	GAGNNNNNCTC	2 cut(s)	667, 699
BpmI	CTGGAG	1 cut(s)	136
BpuEI	CTTGAG	1 cut(s)	736
BpuMI	CCSGG	1 cut(s)	613
Bsa29I	ATCGAT	1 cut(s)	21
BsaAI	YACGTR	1 cut(s)	741
BsaHI	GRCGYC	1 cut(s)	126
BsaI	GGTCTC	2 cut(s)	65, 165
BsaJI	CCNNGG	3 cut(s)	175, 213, 456
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	3 cut(s)	372, 612, 689
Bse1I	ACTGG	1 cut(s)	597
BseBI	CCWGG	1 cut(s)	226
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	3 cut(s)	175, 213, 456
BseGI	GGATG	2 cut(s)	197, 621
BseLI	CCNNNNNNNGG	3 cut(s)	372, 612, 689
BseNI	ACTGG	1 cut(s)	597
BseRI	GAGGAG	1 cut(s)	103
BseSI	GKGCMC	1 cut(s)	468
BseXI	GCAGC	6 cut(s)	167, 408, 411, 466, 546, 589
BseYI	CCCAGC	1 cut(s)	652
Bsh1236I	CGCG	3 cut(s)	63, 177, 215
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	3 cut(s)	229, 436, 701
BshNI	GGYRCC	1 cut(s)	728
BshVI	ATCGAT	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	468
BsiSI	CCGG	1 cut(s)	612
BslFI	GGGAC	1 cut(s)	427
BslI	CCNNNNNNNGG	3 cut(s)	372, 612, 689
BsmAI	GTCTC	3 cut(s)	65, 132, 165
BsmFI	GGGAC	1 cut(s)	427
BsnI	GGCC	3 cut(s)	229, 436, 701
Bso31I	GGTCTC	2 cut(s)	65, 165
Bsp1286I	GDGCHC	2 cut(s)	222, 468
Bsp143I	GATC	5 cut(s)	11, 22, 236, 268, 493
BspANI	GGCC	3 cut(s)	229, 436, 701
BspDI	ATCGAT	1 cut(s)	21
BspFNI	CGCG	3 cut(s)	63, 177, 215
BspLI	GGNNCC	3 cut(s)	151, 219, 730
BspPI	GGATC	1 cut(s)	276
BspQI	GCTCTTC	1 cut(s)	497
BspT107I	GGYRCC	1 cut(s)	728
BspTNI	GGTCTC	2 cut(s)	65, 165
BsrI	ACTGG	1 cut(s)	597
BssECI	CCNNGG	3 cut(s)	175, 213, 456
BssMI	GATC	5 cut(s)	11, 22, 236, 268, 493
BssNI	GRCGYC	1 cut(s)	126
BssSI	CACGAG	1 cut(s)	283
Bst2BI	CACGAG	1 cut(s)	283
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	2 cut(s)	263, 553
Bst6I	CTCTTC	1 cut(s)	497
BstACI	GRCGYC	1 cut(s)	126
BstBAI	YACGTR	1 cut(s)	741
BstC8I	GCNNGC	2 cut(s)	38, 210
BstDEI	CTNAG	2 cut(s)	417, 748
BstDSI	CCRYGG	2 cut(s)	175, 213
BstF5I	GGATG	2 cut(s)	197, 621
BstFNI	CGCG	3 cut(s)	63, 177, 215
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	5 cut(s)	14, 25, 239, 271, 496
BstMAI	GTCTC	3 cut(s)	65, 132, 165
BstMBI	GATC	5 cut(s)	11, 22, 236, 268, 493
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	7 cut(s)	33, 226, 427, 430, 433, 574, 741
BstNI	CCWGG	1 cut(s)	226
BstSCI	CCNGG	2 cut(s)	224, 611
BstSLI	GKGCMC	1 cut(s)	468
BstUI	CGCG	3 cut(s)	63, 177, 215
BstV1I	GCAGC	6 cut(s)	167, 408, 411, 466, 546, 589
BstV2I	GAAGAC	2 cut(s)	632, 685
BstX2I	RGATCY	3 cut(s)	11, 236, 268
BstXI	CCANNNNNNTGG	1 cut(s)	616
BstYI	RGATCY	3 cut(s)	11, 236, 268
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	3 cut(s)	229, 436, 701
BsuTUI	ATCGAT	1 cut(s)	21
BtgI	CCRYGG	2 cut(s)	175, 213
BtrI	CACGTC	1 cut(s)	332
BtsCI	GGATG	2 cut(s)	197, 621
BtsIMutI	CAGTG	2 cut(s)	558, 604
Cac8I	GCNNGC	2 cut(s)	38, 210
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	3 cut(s)	228, 375, 435
Cfr42I	CCGCGG	2 cut(s)	178, 216
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	2 cut(s)	52, 69
Csp6I	GTAC	2 cut(s)	549, 729
CspCI	CAANNNNNGTGG	2 cut(s)	427, 462
CviAII	CATG	2 cut(s)	163, 298
CviQI	GTAC	2 cut(s)	549, 729
DdeI	CTNAG	2 cut(s)	417, 748
DpnI	GATC	5 cut(s)	13, 24, 238, 270, 495
DpnII	GATC	5 cut(s)	11, 22, 236, 268, 493
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
EaeI	YGGCCR	1 cut(s)	699
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
Eco24I	GRGCYC	1 cut(s)	222
Eco31I	GGTCTC	2 cut(s)	65, 165
Eco47I	GGWCC	1 cut(s)	375
Eco72I	CACGTG	1 cut(s)	741
EcoRII	CCWGG	1 cut(s)	224
EcoT38I	GRGCYC	1 cut(s)	222
FaeI	CATG	2 cut(s)	166, 301
FaiI	YATR	6 cut(s)	164, 255, 299, 324, 674, 755
FaqI	GGGAC	1 cut(s)	427
FatI	CATG	2 cut(s)	162, 297
FbaI	TGATCA	1 cut(s)	493
FblI	GTMKAC	1 cut(s)	129
FokI	GGATG	2 cut(s)	184, 628
FriOI	GRGCYC	1 cut(s)	222
FspBI	CTAG	2 cut(s)	539, 546
GlaI	GCGC	1 cut(s)	41
GsaI	CCCAGC	1 cut(s)	656
GsuI	CTGGAG	1 cut(s)	136
HaeIII	GGCC	3 cut(s)	229, 436, 701
HapII	CCGG	1 cut(s)	612
HgaI	GACGC	2 cut(s)	52, 69
HhaI	GCGC	1 cut(s)	42
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	166, 301
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	2 cut(s)	336, 693
HpaII	CCGG	1 cut(s)	612
HphI	GGTGA	2 cut(s)	497, 673
Hpy166II	GTNNAC	3 cut(s)	130, 335, 466
Hpy188I	TCNGA	6 cut(s)	16, 59, 79, 118, 236, 273
Hpy188III	TCNNGA	2 cut(s)	153, 686
Hpy8I	GTNNAC	3 cut(s)	130, 335, 466
Hpy99I	CGWCG	7 cut(s)	63, 68, 128, 131, 134, 194, 263
HpyAV	CCTTC	4 cut(s)	74, 128, 347, 380
HpyCH4III	ACNGT	2 cut(s)	263, 553
HpyCH4IV	ACGT	3 cut(s)	126, 331, 740
HpyCH4V	TGCA	4 cut(s)	183, 307, 466, 744
HpyF10VI	GCNNNNNNNGC	7 cut(s)	33, 226, 427, 430, 433, 574, 741
HpyF3I	CTNAG	2 cut(s)	417, 748
HpySE526I	ACGT	3 cut(s)	126, 331, 740
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	166, 301
HspAI	GCGC	1 cut(s)	40
KpnI	GGTACC	1 cut(s)	732
Ksp22I	TGATCA	1 cut(s)	493
KspI	CCGCGG	2 cut(s)	178, 216
Kzo9I	GATC	5 cut(s)	11, 22, 236, 268, 493
LguI	GCTCTTC	1 cut(s)	497
LmnI	GCTCC	3 cut(s)	155, 217, 740
LpnPI	CCDG	8 cut(s)	166, 211, 238, 468, 610, 625, 638, 745
Lsp1109I	GCAGC	6 cut(s)	167, 408, 411, 466, 546, 589
LweI	GCATC	3 cut(s)	102, 300, 753
MaeI	CTAG	2 cut(s)	539, 546
MaeII	ACGT	3 cut(s)	126, 331, 740
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	5 cut(s)	13, 24, 238, 270, 495
MboI	GATC	5 cut(s)	11, 22, 236, 268, 493
MboII	GAAGA	7 cut(s)	88, 325, 514, 569, 634, 637, 690
MflI	RGATCY	3 cut(s)	11, 236, 268
MhlI	GDGCHC	2 cut(s)	222, 468
MluCI	AATT	3 cut(s)	302, 368, 591
MluI	ACGCGT	1 cut(s)	61
MlyI	GAGTC	1 cut(s)	330
MmeI	TCCRAC	2 cut(s)	82, 141
MslI	CAYNNNNRTG	3 cut(s)	296, 471, 614
MspA1I	CMGCKG	2 cut(s)	177, 215
MspI	CCGG	1 cut(s)	612
MspR9I	CCNGG	2 cut(s)	226, 613
MvaI	CCWGG	1 cut(s)	226
MvnI	CGCG	3 cut(s)	63, 177, 215
MwoI	GCNNNNNNNGC	7 cut(s)	33, 226, 427, 430, 433, 574, 741
NciI	CCSGG	1 cut(s)	613
NdeII	GATC	5 cut(s)	11, 22, 236, 268, 493
NlaIII	CATG	2 cut(s)	166, 301
NlaIV	GGNNCC	3 cut(s)	151, 219, 730
NmeAIII	GCCGAG	2 cut(s)	318, 481
NmuCI	GTSAC	1 cut(s)	485
OliI	CACNNNNGTG	1 cut(s)	471
PciSI	GCTCTTC	1 cut(s)	497
PcsI	WCGNNNNNNNCGW	3 cut(s)	129, 166, 345
PfeI	GAWTC	1 cut(s)	693
Ple19I	CGATCG	1 cut(s)	25
PleI	GAGTC	1 cut(s)	330
PmaCI	CACGTG	1 cut(s)	741
PmlI	CACGTG	1 cut(s)	741
PpsI	GAGTC	1 cut(s)	330
Ppu21I	YACGTR	1 cut(s)	741
Psp6I	CCWGG	1 cut(s)	224
PspCI	CACGTG	1 cut(s)	741
PspFI	CCCAGC	1 cut(s)	652
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	3 cut(s)	151, 219, 730
PspPI	GGNCC	3 cut(s)	228, 375, 435
PsuI	RGATCY	3 cut(s)	11, 236, 268
PvuI	CGATCG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	550, 730
RsaNI	GTAC	2 cut(s)	549, 729
RseI	CAYNNNNRTG	3 cut(s)	296, 471, 614
SacII	CCGCGG	2 cut(s)	178, 216
SalI	GTCGAC	1 cut(s)	128
SapI	GCTCTTC	1 cut(s)	497
Sau3AI	GATC	5 cut(s)	11, 22, 236, 268, 493
Sau96I	GGNCC	3 cut(s)	228, 375, 435
SchI	GAGTC	1 cut(s)	330
ScrFI	CCNGG	2 cut(s)	226, 613
SduI	GDGCHC	2 cut(s)	222, 468
SfaNI	GCATC	3 cut(s)	102, 300, 753
Sfr303I	CCGCGG	2 cut(s)	178, 216
SgrBI	CCGCGG	2 cut(s)	178, 216
SgrDI	CGTCGACG	1 cut(s)	128
SinI	GGWCC	1 cut(s)	375
SmiMI	CAYNNNNRTG	3 cut(s)	296, 471, 614
SmlI	CTYRAG	1 cut(s)	715
SmoI	CTYRAG	1 cut(s)	715
SpeI	ACTAGT	1 cut(s)	545
Sse9I	AATT	3 cut(s)	302, 368, 591
SspMI	CTAG	2 cut(s)	539, 546
StyD4I	CCNGG	2 cut(s)	224, 611
TaaI	ACNGT	2 cut(s)	263, 553
TaiI	ACGT	3 cut(s)	129, 334, 743
TaqI	TCGA	4 cut(s)	21, 129, 348, 645
TasI	AATT	3 cut(s)	302, 368, 591
TatI	WGTACW	1 cut(s)	548
TauI	GCSGC	8 cut(s)	150, 180, 215, 430, 433, 436, 605, 608
TfiI	GAWTC	1 cut(s)	693
TscAI	CASTG	2 cut(s)	558, 604
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	6 cut(s)	180, 421, 424, 479, 534, 577
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	4 cut(s)	186, 314, 326, 399
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	2 cut(s)	558, 604
VneI	GTGCAC	1 cut(s)	464
VpaK11BI	GGWCC	1 cut(s)	375
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	2 cut(s)	539, 546
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.