Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Reverse (-)

46687743 .. 46688665

Gene Structure 923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG187400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAGGCGAGACCGCGGCTGCAACGCCGTCGTTTCATCCACCAAGCTCGCCGCGGAGCCCACCAGGCCCGTCAGATCCACCGTGAAACCCTATGACGACGGTGGGGATCTGAATATTGGGGAGTTCGAGAAACACACGAGGGGCATCGGCATGAAATTGCAGATGAAGATGGGCTATAACGGACGTGGACTCGGCAAAAACGAGGAAGGTATTGAAGCCGAATTGAGGTCCAAAAATGAAGGTCTTGGTTTTGATTACAAGGAGGGGACTAAGCTGCTGCGGCGGCGGCCCAAATCGTTTGTGAAAGCCAAGGTGGTGCACAAAAGTGTCGCTGCTGGTGACAATGATCACAGGAAGAGCAAAACAGAAATAACCAAAAAACCAAGCAGCCTAGACACTAGTACAGTGGAAGAACCCAAGCCCAACGAGCAGCCTAATGAGGCAATTACCAGTGCCGCCGCCACCGGCATGGAGAAGAAGACGACTACCAAAGGTGTCGATTTGCTGGGAAAGGTGATGGCTGATATGAGAAGACCTCTTGATGGAATCTTGGCCGACTTTGAGAACTTAAGTTTGAAAGGTACCAGCTCCAGAGAACTCATCTCAACCAAATTGGTACACCCAAATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

210

Amino Acids

23.05

Weight (kDa)

9.68

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	46 - 83	4.2e-07	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	581
AccB1I	GGYRCC	1 cut(s)	581
AccII	CGCG	2 cut(s)	15, 53
AciI	CCGC	9 cut(s)	13, 15, 51, 53, 280, 283, 286, 456, 459
AclWI	GGATC	2 cut(s)	69, 114
AcoI	YGGCCR	1 cut(s)	552
AfaI	GTAC	3 cut(s)	403, 583, 618
AfiI	CCNNNNNNNGG	2 cut(s)	225, 542
AflII	CTTAAG	1 cut(s)	568
AgsI	TTSAA	2 cut(s)	215, 577
AhlI	ACTAGT	1 cut(s)	398
AjiI	CACGTC	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	62
AleI	CACNNNNGTG	1 cut(s)	324
AluBI	AGCT	3 cut(s)	46, 274, 588
AluI	AGCT	3 cut(s)	46, 274, 588
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	1 cut(s)	3
Alw44I	GTGCAC	1 cut(s)	317
AlwI	GGATC	2 cut(s)	69, 114
AoxI	GGCC	3 cut(s)	65, 287, 552
ApaLI	GTGCAC	1 cut(s)	317
ApeKI	GCWGC	6 cut(s)	18, 274, 277, 332, 387, 430
Asp718I	GGTACC	1 cut(s)	581
AspS9I	GGNCC	3 cut(s)	66, 228, 288
AsuHPI	GGTGA	2 cut(s)	350, 526
AvaII	GGWCC	1 cut(s)	228
BaeGI	GKGCMC	1 cut(s)	321
BanI	GGYRCC	1 cut(s)	581
BanII	GRGCYC	1 cut(s)	60
BauI	CACGAG	1 cut(s)	136
BbsI	GAAGAC	2 cut(s)	485, 538
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	6 cut(s)	5, 261, 264, 319, 399, 442
BccI	CCATC	3 cut(s)	163, 511, 536
BceAI	ACGGC	1 cut(s)	11
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BciT130I	CCWGG	1 cut(s)	64
BclI	TGATCA	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	3
BcuI	ACTAGT	1 cut(s)	398
BfaI	CTAG	2 cut(s)	392, 399
BfrI	CTTAAG	1 cut(s)	568
BglI	GCCNNNNNGGC	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	228
BmgBI	CACGTC	1 cut(s)	185
BmgT120I	GGNCC	3 cut(s)	66, 228, 288
BmiI	GGNNCC	2 cut(s)	57, 583
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	153
BpiI	GAAGAC	2 cut(s)	485, 538
BplI	GAGNNNNNCTC	2 cut(s)	520, 552
BpmI	CTGGAG	1 cut(s)	574
BsaI	GGTCTC	1 cut(s)	3
BsaJI	CCNNGG	3 cut(s)	13, 51, 309
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 542
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	3 cut(s)	13, 51, 309
BseGI	GGATG	1 cut(s)	35
BseLI	CCNNNNNNNGG	2 cut(s)	225, 542
BseNI	ACTGG	1 cut(s)	450
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	6 cut(s)	5, 261, 264, 319, 399, 442
BseYI	CCCAGC	1 cut(s)	505
Bsh1236I	CGCG	2 cut(s)	15, 53
BshFI	GGCC	3 cut(s)	67, 289, 554
BshNI	GGYRCC	1 cut(s)	581
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	465
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	2 cut(s)	225, 542
BsmAI	GTCTC	1 cut(s)	3
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	3 cut(s)	67, 289, 554
Bso31I	GGTCTC	1 cut(s)	3
Bsp1286I	GDGCHC	2 cut(s)	60, 321
Bsp143I	GATC	3 cut(s)	74, 106, 346
BspACI	CCGC	9 cut(s)	13, 15, 51, 53, 280, 283, 286, 456, 459
BspANI	GGCC	3 cut(s)	67, 289, 554
BspFNI	CGCG	2 cut(s)	15, 53
BspLI	GGNNCC	2 cut(s)	57, 583
BspPI	GGATC	2 cut(s)	69, 114
BspQI	GCTCTTC	1 cut(s)	350
BspT107I	GGYRCC	1 cut(s)	581
BspTI	CTTAAG	1 cut(s)	568
BspTNI	GGTCTC	1 cut(s)	3
BsrFI	RCCGGY	1 cut(s)	464
BsrI	ACTGG	1 cut(s)	450
BssAI	RCCGGY	1 cut(s)	464
BssECI	CCNNGG	3 cut(s)	13, 51, 309
BssMI	GATC	3 cut(s)	74, 106, 346
BssSI	CACGAG	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	3 cut(s)	82, 101, 406
Bst6I	CTCTTC	1 cut(s)	350
BstAFI	CTTAAG	1 cut(s)	568
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	270
BstDSI	CCRYGG	2 cut(s)	13, 51
BstF5I	GGATG	1 cut(s)	35
BstFNI	CGCG	2 cut(s)	15, 53
BstKTI	GATC	3 cut(s)	77, 109, 349
BstMAI	GTCTC	1 cut(s)	3
BstMBI	GATC	3 cut(s)	74, 106, 346
BstMWI	GCNNNNNNNGC	5 cut(s)	64, 280, 283, 286, 427
BstNI	CCWGG	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	62
BstSLI	GKGCMC	1 cut(s)	321
BstUI	CGCG	2 cut(s)	15, 53
BstV1I	GCAGC	6 cut(s)	5, 261, 264, 319, 399, 442
BstV2I	GAAGAC	2 cut(s)	485, 538
BstX2I	RGATCY	2 cut(s)	74, 106
BstXI	CCANNNNNNTGG	1 cut(s)	469
BstYI	RGATCY	2 cut(s)	74, 106
BsuRI	GGCC	3 cut(s)	67, 289, 554
BtgI	CCRYGG	2 cut(s)	13, 51
BtrI	CACGTC	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	35
BtsIMutI	CAGTG	2 cut(s)	411, 457
Cac8I	GCNNGC	1 cut(s)	48
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	3 cut(s)	66, 228, 288
Cfr42I	CCGCGG	2 cut(s)	16, 54
Csp6I	GTAC	3 cut(s)	402, 582, 617
CviAII	CATG	2 cut(s)	151, 469
CviQI	GTAC	3 cut(s)	402, 582, 617
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	3 cut(s)	76, 108, 348
DpnII	GATC	3 cut(s)	74, 106, 346
EaeI	YGGCCR	1 cut(s)	552
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	2 cut(s)	154, 472
FaiI	YATR	5 cut(s)	93, 152, 177, 470, 527
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	2 cut(s)	150, 468
FbaI	TGATCA	1 cut(s)	346
FokI	GGATG	1 cut(s)	22
FriOI	GRGCYC	1 cut(s)	60
FspBI	CTAG	2 cut(s)	392, 399
GsaI	CCCAGC	1 cut(s)	509
GsuI	CTGGAG	1 cut(s)	574
HaeIII	GGCC	3 cut(s)	67, 289, 554
HapII	CCGG	1 cut(s)	465
Hin1II	CATG	2 cut(s)	154, 472
HinfI	GANTC	2 cut(s)	189, 546
HpaII	CCGG	1 cut(s)	465
HphI	GGTGA	2 cut(s)	350, 526
Hpy166II	GTNNAC	3 cut(s)	188, 319, 619
Hpy188I	TCNGA	2 cut(s)	74, 111
Hpy188III	TCNNGA	3 cut(s)	127, 539, 591
Hpy8I	GTNNAC	3 cut(s)	188, 319, 619
Hpy99I	CGWCG	2 cut(s)	32, 101
HpyAV	CCTTC	2 cut(s)	200, 233
HpyCH4III	ACNGT	3 cut(s)	82, 101, 406
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	3 cut(s)	21, 160, 319
HpyF10VI	GCNNNNNNNGC	5 cut(s)	64, 280, 283, 286, 427
HpyF3I	CTNAG	1 cut(s)	270
HpySE526I	ACGT	1 cut(s)	184
Hsp92II	CATG	2 cut(s)	154, 472
KpnI	GGTACC	1 cut(s)	585
Ksp22I	TGATCA	1 cut(s)	346
KspI	CCGCGG	2 cut(s)	16, 54
Kzo9I	GATC	3 cut(s)	74, 106, 346
LguI	GCTCTTC	1 cut(s)	350
LmnI	GCTCC	2 cut(s)	55, 593
LpnPI	CCDG	9 cut(s)	49, 76, 321, 337, 463, 478, 491, 598, 604
Lsp1109I	GCAGC	6 cut(s)	5, 261, 264, 319, 399, 442
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	2 cut(s)	392, 399
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	3 cut(s)	76, 108, 348
MboI	GATC	3 cut(s)	74, 106, 346
MboII	GAAGA	6 cut(s)	178, 367, 422, 487, 490, 543
MflI	RGATCY	2 cut(s)	74, 106
MhlI	GDGCHC	2 cut(s)	60, 321
MluCI	AATT	4 cut(s)	155, 221, 444, 611
MlyI	GAGTC	1 cut(s)	183
MnlI	CCTC	6 cut(s)	132, 196, 219, 256, 433, 546
MseI	TTAA	1 cut(s)	569
MslI	CAYNNNNRTG	3 cut(s)	149, 324, 467
MspA1I	CMGCKG	2 cut(s)	15, 53
MspCI	CTTAAG	1 cut(s)	568
MspI	CCGG	1 cut(s)	465
MspR9I	CCNGG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	64
MvnI	CGCG	2 cut(s)	15, 53
MwoI	GCNNNNNNNGC	5 cut(s)	64, 280, 283, 286, 427
NdeII	GATC	3 cut(s)	74, 106, 346
NlaIII	CATG	2 cut(s)	154, 472
NlaIV	GGNNCC	2 cut(s)	57, 583
NmeAIII	GCCGAG	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	338
OliI	CACNNNNGTG	1 cut(s)	324
PciSI	GCTCTTC	1 cut(s)	350
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	546
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	57, 583
PspPI	GGNCC	3 cut(s)	66, 228, 288
PsuI	RGATCY	2 cut(s)	74, 106
RsaI	GTAC	3 cut(s)	403, 583, 618
RsaNI	GTAC	3 cut(s)	402, 582, 617
RseI	CAYNNNNRTG	3 cut(s)	149, 324, 467
SacII	CCGCGG	2 cut(s)	16, 54
SapI	GCTCTTC	1 cut(s)	350
SaqAI	TTAA	1 cut(s)	569
Sau3AI	GATC	3 cut(s)	74, 106, 346
Sau96I	GGNCC	3 cut(s)	66, 228, 288
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	2 cut(s)	60, 321
SfaNI	GCATC	1 cut(s)	153
Sfr303I	CCGCGG	2 cut(s)	16, 54
SgrBI	CCGCGG	2 cut(s)	16, 54
SinI	GGWCC	1 cut(s)	228
SmiMI	CAYNNNNRTG	3 cut(s)	149, 324, 467
SmlI	CTYRAG	1 cut(s)	568
SmoI	CTYRAG	1 cut(s)	568
SpeI	ACTAGT	1 cut(s)	398
Sse9I	AATT	4 cut(s)	155, 221, 444, 611
SsiI	CCGC	9 cut(s)	13, 15, 51, 53, 280, 283, 286, 456, 459
SspI	AATATT	1 cut(s)	115
SspMI	CTAG	2 cut(s)	392, 399
StyD4I	CCNGG	1 cut(s)	62
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	3 cut(s)	82, 101, 406
TaiI	ACGT	1 cut(s)	187
TaqI	TCGA	2 cut(s)	126, 498
TasI	AATT	4 cut(s)	155, 221, 444, 611
TatI	WGTACW	1 cut(s)	401
TauI	GCSGC	7 cut(s)	18, 53, 283, 286, 289, 458, 461
TfiI	GAWTC	1 cut(s)	546
Tru1I	TTAA	1 cut(s)	569
Tru9I	TTAA	1 cut(s)	569
TscAI	CASTG	2 cut(s)	411, 457
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	6 cut(s)	18, 274, 277, 332, 387, 430
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	4 cut(s)	24, 167, 179, 252
TspGWI	ACGGA	1 cut(s)	195
TspRI	CASTG	2 cut(s)	411, 457
Vha464I	CTTAAG	1 cut(s)	568
VneI	GTGCAC	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	228
XspI	CTAG	2 cut(s)	392, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.