Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Reverse (-)

30020894 .. 30026499

Gene Structure 5606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0278500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1668 bp

ATGAAAGGCGGGACGGTCCAGATCAACTGGCACGACACCAAGCCCGTCCTAACCCTAGATTTCCACCCTCATTCCGGCATTCTCGCCACCGGCGGCGCCGATTACGACATCAAGCTTTGGTTGATAAATTCCGGCGAGAAGCTCCCTTCAGTGTCGTATCATAATAGCCTTTCTTACCATAGTTCTGCTATAAATGTCCTTCGCTTCTCCCCTTCGGGAGAACAAATTGCCTCCGGTGCAGATGGAGGCGAGCTGATTATATGGAAGTTGCATGCCACAGAAAATAATCAAACGTGGAAGGTTCTTAAGACATTGTCATTTCACCGGAAAGACGTGCTGGACCTTGAGTGGTCTGCTGATGGTTCATTTCTCATCTCCGGTTCAGTCGATAATTCATGCATCATATGGGATGCTAACAAAGGTTCTGTCCATCAGATTTTGGATTCCCATTTCCATTATGTTCAAGGTGTGGCATGGGACCCATTGGCCAAGTATGTTGCCTCCCTTAGTTCAGATAGAACTTGTCGCATTTATCTTAAAAAAGCTCAAACAAAAACCAAGGGTGCCGATAAGACAAATTATGTTTGTCAACATGTTATTTCAAAGGCTGAAAACCCTTCAGATGAGTCTAAGTCTGCGAAAAACCATCTCTTTCACGATGAGACACTACCATCTTTTTTCCGGAGGTTAGCGTGGTCACCTGATGGATCATTTCTACTTGTTCCAGCAGGTTCCTACAAAGTATCACCTGCAACAGAAACAATAAATACTGCTTATGTATTTTCAAGAAAGGACCTTTCAAGGCCTGCTCTACATCTCCCTTGCGCCAGCAAACCAATAGTAGCAGTTCGATTCTGCCCTTTGGCTTTTAGACTGCGGGGAACCAATCCATCGGGGTTCTTTAAGCTTCCCCATCGTATAGTTTTTGCGGTGGCCACTTTAGATTCTCTGAACATTTATGACACAGAGAGTGTTACTCCAATTGCAGTTTTGGCTGGTCTTCATTATGCAGCCATAACAGACATCACATGGTCACCTGATGCCCATTATCTAGCATTATCTTCCCAAGATGGTTACTGCACTTTAGTAGAATTTGAAAATGATGAACTGGGATCACCCATCCATTTGTCAGAAGAGAAGAAAATCATTGGTGAAGAGGACGAAAGCTTGGTAAAGAAACCAGAGGGCATGTTAATCAAAGCTACTACAAAAAATAGTCTTGTTGCAACTGAAGCCATTAATGAAGAGAACAAAATCTCAGTTAAGAAGCCAGATGACATGGTAATTGACACTGCTCCAACTACAAGTCTTGTTGCAGCCAAAAATGAAATATCAGAAGCAGAAAGGACCAAGCAAACAGAAGCAGAAAAGAAAGTCATAGGTGATGACAGAAGCAGAGTTGAAAAGCCAGAGGACATGATAATTGACGCTGCCACAAATGATAGTCTTGCAGCCGATATTGAAATATCAGAAGCAGAAAGGAAAGAAAAGAAAGTCATGGGTGATGACAGTAGCACAGTTCAGAAGCCAGAGGACATGGTAACTGAAGCGTCAGCAAATTATAGTCTTGCAAACGATGGCAAAAAAGAATCACCGAGCACAGTGATGATTCCTACTGTAAATAAGCCTACTAAAAGGCGCATTACACCCATGGCAATTGACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

555

Amino Acids

61.1

Weight (kDa)

5.8

Isoelectric Point (pI)

38.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_CAF1B_HIR1	PF24105	1 - 370	2e-117	CAF1B/HIR1 beta-propeller domain
Beta-prop_Aladin	PF25460	9 - 181	7.3e-08	Aladin seven-bladed propeller
Beta-prop_WDR3_1st	PF25173	11 - 93	8.6e-10	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	12 - 101	1.8e-09	THOC3 beta-propeller domain
Beta-prop_EML	PF23409	12 - 145	7.3e-09	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR5	PF25175	13 - 184	2.7e-28	WDR5 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	13 - 187	3.6e-12	TEP-1 second beta-propeller
Beta-prop_IFT140_1st	PF23383	13 - 93	4.4e-07	IFT140 first beta-propeller
WD40_WDHD1_1st	PF24817	13 - 165	2.4e-15	WDHD1 first WD40 domain
WD40_Prp19	PF24814	14 - 100	2.9e-09	Prp19 WD40 domain
Beta-prop_WDR3_2nd	PF25172	14 - 136	5.2e-10	WDR3 second beta-propeller domain
EIF3I	PF24805	16 - 184	2.5e-11	EIF3I
Beta-prop_EML_2	PF23414	18 - 185	7.1e-15	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR75_1st	PF23869	19 - 95	7.5e-06	WD repeat-containing protein 75 first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	27 - 174	5e-07	WDR36/Utp21 second beta-propeller domain
WD40_CDC20-Fz	PF24807	57 - 203	7.6e-15	CDC20/Fizzy WD40 domain
WD40_MABP1-WDR62_2nd	PF24782	60 - 201	6.9e-08	MABP1/WDR62 second WD40 domain
WDR55	PF24796	62 - 148	8.4e-09	WDR55
Beta-prop_IFT122_1st	PF23381	63 - 191	2e-06	IFT122 first beta-propeller
ANAPC4_WD40	PF12894	68 - 159	1e-05	Anaphase-promoting complex subunit 4 WD40 domain
WD40_Prp19	PF24814	96 - 184	5.7e-12	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	97 - 195	5.8e-12	WDR3 first beta-propeller domain
WD40	PF00400	99 - 137	3e-08	WD domain, G-beta repeat
WD40_Gbeta	PF25391	104 - 196	1.3e-07	G protein beta WD-40 repeat protein
Beta-prop_THOC3	PF25174	108 - 192	6.5e-14	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	757
Acc36I	ACCTGC	2 cut(s)	719, 757
AccB1I	GGYRCC	2 cut(s)	95, 563
AccIII	TCCGGA	1 cut(s)	681
AciI	CCGC	4 cut(s)	9, 93, 877, 929
AclWI	GGATC	2 cut(s)	715, 1120
AcoI	YGGCCR	2 cut(s)	486, 933
AcsI	RAATTY	2 cut(s)	127, 1091
AcuI	CTGAAG	4 cut(s)	132, 603, 1251, 1566
AcyI	GRCGYC	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	74
AflII	CTTAAG	1 cut(s)	305
AflIII	ACRYGT	1 cut(s)	592
AgsI	TTSAA	7 cut(s)	464, 603, 786, 801, 1097, 1403, 1463
AjiI	CACGTC	1 cut(s)	334
AluBI	AGCT	7 cut(s)	115, 142, 253, 545, 907, 1167, 1202
AluI	AGCT	7 cut(s)	115, 142, 253, 545, 907, 1167, 1202
Alw21I	GWGCWC	1 cut(s)	1601
Alw26I	GTCTC	1 cut(s)	656
AlwI	GGATC	2 cut(s)	715, 1120
Aor13HI	TCCGGA	1 cut(s)	681
AoxI	GGCC	3 cut(s)	486, 803, 933
ApeKI	GCWGC	4 cut(s)	1010, 1316, 1430, 1451
ApoI	RAATTY	2 cut(s)	127, 1091
ArsI	GACNNNNNNTTYG	2 cut(s)	411, 443
AseI	ATTAAT	1 cut(s)	1239
AspLEI	GCGC	3 cut(s)	98, 827, 1641
AspS9I	GGNCC	5 cut(s)	16, 340, 478, 793, 1347
AsuHPI	GGTGA	9 cut(s)	314, 690, 738, 1026, 1107, 1163, 1394, 1514, 1584
AvaII	GGWCC	5 cut(s)	16, 340, 478, 793, 1347
BalI	TGGCCA	2 cut(s)	488, 935
BanI	GGYRCC	2 cut(s)	95, 563
BbsI	GAAGAC	1 cut(s)	992
Bbv12I	GWGCWC	1 cut(s)	1601
BbvI	GCAGC	4 cut(s)	1022, 1328, 1417, 1463
BcoDI	GTCTC	1 cut(s)	656
BfaI	CTAG	2 cut(s)	56, 1052
BfoI	RGCGCY	1 cut(s)	99
BfrI	CTTAAG	1 cut(s)	305
BfuAI	ACCTGC	2 cut(s)	719, 757
BisI	GCNGC	5 cut(s)	94, 1011, 1317, 1431, 1452
BlsI	GCNGC	5 cut(s)	95, 1012, 1318, 1432, 1453
Bme18I	GGWCC	5 cut(s)	16, 340, 478, 793, 1347
BmgBI	CACGTC	1 cut(s)	334
BmgT120I	GGNCC	5 cut(s)	16, 340, 478, 793, 1347
BmiI	GGNNCC	6 cut(s)	97, 479, 480, 565, 733, 883
BmrI	ACTGGG	1 cut(s)	1118
BmsI	GCATC	3 cut(s)	400, 408, 1030
BmuI	ACTGGG	1 cut(s)	1118
BpiI	GAAGAC	1 cut(s)	992
BplI	GAGNNNNNCTC	2 cut(s)	961, 993
BpuEI	CTTGAG	1 cut(s)	365
BsaHI	GRCGYC	1 cut(s)	96
BsaJI	CCNNGG	2 cut(s)	558, 1650
BsaWI	WCCGGW	4 cut(s)	233, 324, 377, 681
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	2 cut(s)	32, 1113
BseAI	TCCGGA	1 cut(s)	681
BseDI	CCNNGG	2 cut(s)	558, 1650
BseGI	GGATG	2 cut(s)	415, 1119
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	1272
BseNI	ACTGG	2 cut(s)	32, 1113
BseXI	GCAGC	4 cut(s)	1022, 1328, 1417, 1463
BsgI	GTGCAG	2 cut(s)	258, 1063
BshFI	GGCC	3 cut(s)	488, 805, 935
BshNI	GGYRCC	2 cut(s)	95, 563
BsiHKAI	GWGCWC	1 cut(s)	1601
BsiSI	CCGG	7 cut(s)	75, 90, 132, 234, 325, 378, 682
BslFI	GGGAC	2 cut(s)	25, 491
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	656
BsmFI	GGGAC	2 cut(s)	25, 491
BsmI	GAATGC	1 cut(s)	78
BsnI	GGCC	3 cut(s)	488, 805, 935
Bsp1286I	GDGCHC	1 cut(s)	1601
Bsp13I	TCCGGA	1 cut(s)	681
Bsp143I	GATC	3 cut(s)	21, 707, 1112
Bsp19I	CCATGG	1 cut(s)	1650
BspACI	CCGC	4 cut(s)	9, 93, 877, 929
BspANI	GGCC	3 cut(s)	488, 805, 935
BspCNI	CTCAG	1 cut(s)	1271
BspEI	TCCGGA	1 cut(s)	681
BspLI	GGNNCC	6 cut(s)	97, 479, 480, 565, 733, 883
BspMI	ACCTGC	2 cut(s)	719, 757
BspPI	GGATC	2 cut(s)	715, 1120
BspT107I	GGYRCC	2 cut(s)	95, 563
BspTI	CTTAAG	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	2 cut(s)	32, 1113
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	2 cut(s)	558, 1650
BssMI	GATC	3 cut(s)	21, 707, 1112
BssNI	GRCGYC	1 cut(s)	96
BssT1I	CCWWGG	2 cut(s)	558, 1650
Bst4CI	ACNGT	5 cut(s)	16, 1511, 1519, 1603, 1618
Bst6I	CTCTTC	3 cut(s)	1128, 1149, 1239
BstACI	GRCGYC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	305
BstC8I	GCNNGC	4 cut(s)	251, 273, 807, 829
BstDEI	CTNAG	3 cut(s)	506, 630, 1258
BstDSI	CCRYGG	1 cut(s)	1650
BstEII	GGTNACC	2 cut(s)	696, 1032
BstF5I	GGATG	2 cut(s)	415, 1119
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	3 cut(s)	98, 827, 1641
BstKTI	GATC	3 cut(s)	24, 710, 1115
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	3 cut(s)	21, 707, 1112
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 992, 1232
BstNSI	RCATGY	3 cut(s)	275, 596, 1192
BstPI	GGTNACC	2 cut(s)	696, 1032
BstV1I	GCAGC	4 cut(s)	1022, 1328, 1417, 1463
BstV2I	GAAGAC	1 cut(s)	992
BsuRI	GGCC	3 cut(s)	488, 805, 935
BtgI	CCRYGG	1 cut(s)	1650
BtrI	CACGTC	1 cut(s)	334
BtsCI	GGATG	2 cut(s)	415, 1119
BtsI	GCAGTG	1 cut(s)	1290
BtsIMutI	CAGTG	3 cut(s)	156, 1290, 1608
BveI	ACCTGC	2 cut(s)	719, 757
Cac8I	GCNNGC	4 cut(s)	251, 273, 807, 829
CfoI	GCGC	3 cut(s)	98, 827, 1641
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	5 cut(s)	16, 340, 478, 793, 1347
CseI	GACGC	2 cut(s)	1436, 1539
DdeI	CTNAG	3 cut(s)	506, 630, 1258
DinI	GGCGCC	1 cut(s)	97
DpnI	GATC	3 cut(s)	23, 709, 1114
DpnII	GATC	3 cut(s)	21, 707, 1112
EaeI	YGGCCR	2 cut(s)	486, 933
Eam1104I	CTCTTC	3 cut(s)	1128, 1149, 1239
EarI	CTCTTC	3 cut(s)	1128, 1149, 1239
Eco130I	CCWWGG	2 cut(s)	558, 1650
Eco147I	AGGCCT	1 cut(s)	805
Eco47I	GGWCC	5 cut(s)	16, 340, 478, 793, 1347
Eco57I	CTGAAG	4 cut(s)	132, 603, 1251, 1566
Eco91I	GGTNACC	2 cut(s)	696, 1032
EcoO109I	RGGNCCY	2 cut(s)	478, 793
EcoO65I	GGTNACC	2 cut(s)	696, 1032
EcoT14I	CCWWGG	2 cut(s)	558, 1650
EcoT22I	ATGCAT	1 cut(s)	401
EgeI	GGCGCC	1 cut(s)	97
EheI	GGCGCC	1 cut(s)	97
ErhI	CCWWGG	2 cut(s)	558, 1650
FaqI	GGGAC	2 cut(s)	25, 491
FauI	CCCGC	2 cut(s)	2, 870
FauNDI	CATATG	1 cut(s)	404
Fnu4HI	GCNGC	5 cut(s)	94, 1011, 1317, 1431, 1452
FokI	GGATG	2 cut(s)	422, 1106
Fsp4HI	GCNGC	5 cut(s)	94, 1011, 1317, 1431, 1452
FspBI	CTAG	2 cut(s)	56, 1052
GlaI	GCGC	3 cut(s)	97, 826, 1640
GluI	GCNGC	5 cut(s)	94, 1011, 1317, 1431, 1452
HaeII	RGCGCY	1 cut(s)	99
HaeIII	GGCC	3 cut(s)	488, 805, 935
HapII	CCGG	7 cut(s)	75, 90, 132, 234, 325, 378, 682
HgaI	GACGC	2 cut(s)	1436, 1539
HhaI	GCGC	3 cut(s)	98, 827, 1641
Hin1I	GRCGYC	1 cut(s)	96
Hin6I	GCGC	3 cut(s)	96, 825, 1639
HinP1I	GCGC	3 cut(s)	96, 825, 1639
HincII	GTYRAC	1 cut(s)	590
HindII	GTYRAC	1 cut(s)	590
HindIII	AAGCTT	3 cut(s)	113, 905, 1165
HinfI	GANTC	6 cut(s)	443, 626, 852, 944, 1589, 1609
HpaII	CCGG	7 cut(s)	75, 90, 132, 234, 325, 378, 682
HphI	GGTGA	9 cut(s)	314, 690, 738, 1026, 1107, 1163, 1394, 1514, 1584
Hpy166II	GTNNAC	1 cut(s)	590
Hpy188I	TCNGA	8 cut(s)	435, 514, 622, 951, 1132, 1336, 1471, 1524
Hpy188III	TCNNGA	5 cut(s)	19, 216, 656, 682, 786
Hpy8I	GTNNAC	1 cut(s)	590
HpyAV	CCTTC	5 cut(s)	156, 209, 222, 292, 627
HpyCH4III	ACNGT	5 cut(s)	16, 1511, 1519, 1603, 1618
HpyCH4IV	ACGT	2 cut(s)	293, 333
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 992, 1232
HpyF3I	CTNAG	3 cut(s)	506, 630, 1258
HpySE526I	ACGT	2 cut(s)	293, 333
Hsp92I	GRCGYC	1 cut(s)	96
HspAI	GCGC	3 cut(s)	96, 825, 1639
KasI	GGCGCC	1 cut(s)	95
KflI	GGGWCCC	1 cut(s)	478
Kpn2I	TCCGGA	1 cut(s)	681
Kzo9I	GATC	3 cut(s)	21, 707, 1112
LmnI	GCTCC	2 cut(s)	147, 1300
Lsp1109I	GCAGC	4 cut(s)	1022, 1328, 1417, 1463
LweI	GCATC	3 cut(s)	400, 408, 1030
MaeI	CTAG	2 cut(s)	56, 1052
MaeII	ACGT	2 cut(s)	293, 333
MaeIII	GTNAC	5 cut(s)	696, 973, 1032, 1073, 1540
MalI	GATC	3 cut(s)	23, 709, 1114
MboI	GATC	3 cut(s)	21, 707, 1112
MboII	GAAGA	6 cut(s)	992, 1053, 1145, 1150, 1166, 1256
MfeI	CAATTG	2 cut(s)	981, 1656
MhlI	GDGCHC	1 cut(s)	1601
MlsI	TGGCCA	2 cut(s)	488, 935
MluNI	TGGCCA	2 cut(s)	488, 935
Mly113I	GGCGCC	1 cut(s)	96
MlyI	GAGTC	1 cut(s)	635
MmeI	TCCRAC	1 cut(s)	1322
MnlI	CCTC	9 cut(s)	78, 239, 241, 511, 678, 1150, 1177, 1405, 1525
Mox20I	TGGCCA	2 cut(s)	488, 935
Mph1103I	ATGCAT	1 cut(s)	401
MroI	TCCGGA	1 cut(s)	681
MscI	TGGCCA	2 cut(s)	488, 935
MseI	TTAA	6 cut(s)	306, 537, 903, 1193, 1239, 1263
MslI	CAYNNNNRTG	1 cut(s)	1604
Msp20I	TGGCCA	2 cut(s)	488, 935
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	7 cut(s)	75, 90, 132, 234, 325, 378, 682
MunI	CAATTG	2 cut(s)	981, 1656
Mva1269I	GAATGC	1 cut(s)	78
MwoI	GCNNNNNNNGC	3 cut(s)	236, 992, 1232
NarI	GGCGCC	1 cut(s)	96
NcoI	CCATGG	1 cut(s)	1650
NdeI	CATATG	1 cut(s)	404
NdeII	GATC	3 cut(s)	21, 707, 1112
NlaIV	GGNNCC	6 cut(s)	97, 479, 480, 565, 733, 883
NmuCI	GTSAC	2 cut(s)	696, 1032
NsiI	ATGCAT	1 cut(s)	401
NspI	RCATGY	3 cut(s)	275, 596, 1192
PaeI	GCATGC	1 cut(s)	275
PaqCI	CACCTGC	1 cut(s)	757
PceI	AGGCCT	1 cut(s)	805
PciI	ACATGT	1 cut(s)	592
PctI	GAATGC	1 cut(s)	78
PfeI	GAWTC	5 cut(s)	443, 852, 944, 1589, 1609
PflFI	GACNNNGTC	1 cut(s)	313
PkrI	GCNGC	5 cut(s)	95, 1012, 1318, 1432, 1453
PleI	GAGTC	1 cut(s)	634
PluTI	GGCGCC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	634
PpuMI	RGGWCCY	2 cut(s)	478, 793
PscI	ACATGT	1 cut(s)	592
PshBI	ATTAAT	1 cut(s)	1239
Psp5II	RGGWCCY	2 cut(s)	478, 793
PspEI	GGTNACC	2 cut(s)	696, 1032
PspN4I	GGNNCC	6 cut(s)	97, 479, 480, 565, 733, 883
PspPI	GGNCC	5 cut(s)	16, 340, 478, 793, 1347
PspPPI	RGGWCCY	2 cut(s)	478, 793
PsyI	GACNNNGTC	1 cut(s)	313
RseI	CAYNNNNRTG	1 cut(s)	1604
SaqAI	TTAA	6 cut(s)	306, 537, 903, 1193, 1239, 1263
SatI	GCNGC	5 cut(s)	94, 1011, 1317, 1431, 1452
Sau3AI	GATC	3 cut(s)	21, 707, 1112
Sau96I	GGNCC	5 cut(s)	16, 340, 478, 793, 1347
SchI	GAGTC	1 cut(s)	635
SduI	GDGCHC	1 cut(s)	1601
SfaNI	GCATC	3 cut(s)	400, 408, 1030
SfoI	GGCGCC	1 cut(s)	97
SgrAI	CRCCGGYG	1 cut(s)	89
SinI	GGWCC	5 cut(s)	16, 340, 478, 793, 1347
SmiMI	CAYNNNNRTG	1 cut(s)	1604
SmlI	CTYRAG	2 cut(s)	305, 344
SmoI	CTYRAG	2 cut(s)	305, 344
SphI	GCATGC	1 cut(s)	275
SseBI	AGGCCT	1 cut(s)	805
SsiI	CCGC	4 cut(s)	9, 93, 877, 929
SspDI	GGCGCC	1 cut(s)	95
SspMI	CTAG	2 cut(s)	56, 1052
StuI	AGGCCT	1 cut(s)	805
StyI	CCWWGG	2 cut(s)	558, 1650
TaaI	ACNGT	5 cut(s)	16, 1511, 1519, 1603, 1618
TaiI	ACGT	2 cut(s)	296, 336
TaqI	TCGA	2 cut(s)	387, 850
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	5 cut(s)	443, 852, 944, 1589, 1609
Tru1I	TTAA	6 cut(s)	306, 537, 903, 1193, 1239, 1263
Tru9I	TTAA	6 cut(s)	306, 537, 903, 1193, 1239, 1263
TscAI	CASTG	3 cut(s)	156, 1297, 1608
TseFI	GTSAC	2 cut(s)	696, 1032
TseI	GCWGC	4 cut(s)	1010, 1316, 1430, 1451
Tsp45I	GTSAC	2 cut(s)	696, 1032
TspDTI	ATGAA	7 cut(s)	17, 354, 384, 992, 1119, 1257, 1341
TspRI	CASTG	3 cut(s)	156, 1297, 1608
Tth111I	GACNNNGTC	1 cut(s)	313
Vha464I	CTTAAG	1 cut(s)	305
VpaK11BI	GGWCC	5 cut(s)	16, 340, 478, 793, 1347
VspI	ATTAAT	1 cut(s)	1239
XapI	RAATTY	2 cut(s)	127, 1091
XceI	RCATGY	3 cut(s)	275, 596, 1192
XspI	CTAG	2 cut(s)	56, 1052
Zsp2I	ATGCAT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.