Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Reverse (-)

42438971 .. 42440379

Gene Structure 1409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G021190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGATTTGAGGTCTGAAATCGATCGCCTTTCTCGCAAGCGCAAGGAGAACAATCTCCGACGCGTCGTTGAGACCTCGAAAGGAAATCTCCGCATCTTCGCTCTCGCTTCCTCCTCCTCCGACCACGACGACGACGATGGAGACAACGGTGGCTCCAGAAAACGCATGAGGCGAGACCGCGGCCGCAACGCCGTCGTTTCATCCACCCAGCTCGCCGTGGAGCCCACCAGACCCGTCAGGCCCGCCGTGAAACCCTACGACGACGGTGGGGATCTGAATATTGGGGAGTTCGAGAAACACACGAGGGGCATCGGCATGAAATTGCTGATGAAGATGGGATATAACGGACGTGGACTCGGCAAAAACGAGGAAGTCCCTGTTGACAATGAAAAAAAGAAGGTGAAAATTATATGCACATATCTATATATGTTTGTATATGTGAATCCTCCTAATGAAATGATGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

155

Amino Acids

17.67

Weight (kDa)

9.71

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	101 - 124	3.8e-07	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	63, 180
AciI	CCGC	5 cut(s)	91, 178, 180, 184, 243
AclWI	GGATC	1 cut(s)	279
AcoI	YGGCCR	1 cut(s)	181
AflIII	ACRYGT	1 cut(s)	61
AjiI	CACGTC	1 cut(s)	350
AluBI	AGCT	1 cut(s)	211
AluI	AGCT	1 cut(s)	211
Alw26I	GTCTC	3 cut(s)	65, 135, 168
AlwI	GGATC	1 cut(s)	279
AoxI	GGCC	2 cut(s)	181, 239
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	240
AsuHPI	GGTGA	1 cut(s)	412
BanII	GRGCYC	1 cut(s)	225
BauI	CACGAG	1 cut(s)	301
BccI	CCATC	2 cut(s)	131, 328
BceAI	ACGGC	3 cut(s)	176, 200, 230
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BcoDI	GTCTC	3 cut(s)	65, 135, 168
BisI	GCNGC	2 cut(s)	181, 184
BlsI	GCNGC	2 cut(s)	182, 185
BmgBI	CACGTC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	240
BmiI	GGNNCC	2 cut(s)	154, 222
BmsI	GCATC	2 cut(s)	102, 318
BpmI	CTGGAG	1 cut(s)	139
Bsa29I	ATCGAT	1 cut(s)	21
BsaI	GGTCTC	2 cut(s)	65, 168
BsaJI	CCNNGG	2 cut(s)	178, 216
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	2 cut(s)	178, 216
BseGI	GGATG	1 cut(s)	200
BseRI	GAGGAG	2 cut(s)	103, 106
BseX3I	CGGCCG	1 cut(s)	181
BseYI	CCCAGC	1 cut(s)	207
Bsh1236I	CGCG	2 cut(s)	63, 180
Bsh1285I	CGRYCG	2 cut(s)	25, 184
BshFI	GGCC	2 cut(s)	183, 241
BshVI	ATCGAT	1 cut(s)	21
BsiEI	CGRYCG	2 cut(s)	25, 184
BslFI	GGGAC	1 cut(s)	359
BsmAI	GTCTC	3 cut(s)	65, 135, 168
BsmFI	GGGAC	1 cut(s)	359
BsnI	GGCC	2 cut(s)	183, 241
Bso31I	GGTCTC	2 cut(s)	65, 168
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	2 cut(s)	22, 271
BspACI	CCGC	5 cut(s)	91, 178, 180, 184, 243
BspANI	GGCC	2 cut(s)	183, 241
BspDI	ATCGAT	1 cut(s)	21
BspFNI	CGCG	2 cut(s)	63, 180
BspLI	GGNNCC	2 cut(s)	154, 222
BspPI	GGATC	1 cut(s)	279
BspTNI	GGTCTC	2 cut(s)	65, 168
BssECI	CCNNGG	2 cut(s)	178, 216
BssMI	GATC	2 cut(s)	22, 271
BssSI	CACGAG	1 cut(s)	301
Bst2BI	CACGAG	1 cut(s)	301
Bst4CI	ACNGT	2 cut(s)	149, 266
BstC8I	GCNNGC	3 cut(s)	38, 213, 243
BstDSI	CCRYGG	2 cut(s)	178, 216
BstF5I	GGATG	1 cut(s)	200
BstFNI	CGCG	2 cut(s)	63, 180
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	2 cut(s)	25, 274
BstMAI	GTCTC	3 cut(s)	65, 135, 168
BstMBI	GATC	2 cut(s)	22, 271
BstMCI	CGRYCG	2 cut(s)	25, 184
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstUI	CGCG	2 cut(s)	63, 180
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BstZI	CGGCCG	1 cut(s)	181
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	183, 241
BsuTUI	ATCGAT	1 cut(s)	21
BtgI	CCRYGG	2 cut(s)	178, 216
BtrI	CACGTC	1 cut(s)	350
BtsCI	GGATG	1 cut(s)	200
Cac8I	GCNNGC	3 cut(s)	38, 213, 243
CciNI	GCGGCCGC	1 cut(s)	181
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	240
Cfr42I	CCGCGG	1 cut(s)	181
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	2 cut(s)	52, 69
CviAII	CATG	2 cut(s)	166, 316
CviJI	RGCY	5 cut(s)	153, 183, 211, 223, 241
CviKI_1	RGCY	5 cut(s)	153, 183, 211, 223, 241
DpnI	GATC	2 cut(s)	24, 273
DpnII	GATC	2 cut(s)	22, 271
EaeI	YGGCCR	1 cut(s)	181
EagI	CGGCCG	1 cut(s)	181
EclXI	CGGCCG	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	225
Eco31I	GGTCTC	2 cut(s)	65, 168
Eco52I	CGGCCG	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	225
FaeI	CATG	2 cut(s)	169, 319
FaqI	GGGAC	1 cut(s)	359
FatI	CATG	2 cut(s)	165, 315
FauI	CCCGC	1 cut(s)	250
Fnu4HI	GCNGC	2 cut(s)	181, 184
FokI	GGATG	1 cut(s)	187
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	2 cut(s)	181, 184
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	2 cut(s)	181, 184
GsaI	CCCAGC	1 cut(s)	211
GsuI	CTGGAG	1 cut(s)	139
HaeIII	GGCC	2 cut(s)	183, 241
HgaI	GACGC	2 cut(s)	52, 69
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	169, 319
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	2 cut(s)	354, 442
HphI	GGTGA	1 cut(s)	412
Hpy166II	GTNNAC	2 cut(s)	353, 382
Hpy188I	TCNGA	4 cut(s)	16, 59, 121, 276
Hpy188III	TCNNGA	2 cut(s)	156, 292
Hpy8I	GTNNAC	2 cut(s)	353, 382
Hpy99I	CGWCG	8 cut(s)	63, 68, 131, 134, 137, 197, 263, 266
HpyAV	CCTTC	1 cut(s)	391
HpyCH4III	ACNGT	2 cut(s)	149, 266
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	1 cut(s)	414
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	2 cut(s)	169, 319
HspAI	GCGC	1 cut(s)	40
KspI	CCGCGG	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	22, 271
LmnI	GCTCC	2 cut(s)	158, 220
LpnPI	CCDG	5 cut(s)	169, 221, 223, 241, 390
LweI	GCATC	2 cut(s)	102, 318
MaeII	ACGT	1 cut(s)	349
MalI	GATC	2 cut(s)	24, 273
MboI	GATC	2 cut(s)	22, 271
MboII	GAAGA	2 cut(s)	88, 343
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	2 cut(s)	320, 405
MluI	ACGCGT	1 cut(s)	61
MlyI	GAGTC	1 cut(s)	348
MmeI	TCCRAC	2 cut(s)	82, 144
MnlI	CCTC	9 cut(s)	3, 85, 121, 124, 127, 162, 297, 361, 456
MslI	CAYNNNNRTG	1 cut(s)	314
MspA1I	CMGCKG	1 cut(s)	180
MvnI	CGCG	2 cut(s)	63, 180
MwoI	GCNNNNNNNGC	1 cut(s)	33
NdeII	GATC	2 cut(s)	22, 271
NlaIII	CATG	2 cut(s)	169, 319
NlaIV	GGNNCC	2 cut(s)	154, 222
NmeAIII	GCCGAG	1 cut(s)	336
NotI	GCGGCCGC	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 169, 363
PfeI	GAWTC	1 cut(s)	442
PkrI	GCNGC	2 cut(s)	182, 185
Ple19I	CGATCG	1 cut(s)	25
PleI	GAGTC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	348
PspFI	CCCAGC	1 cut(s)	207
PspN4I	GGNNCC	2 cut(s)	154, 222
PspPI	GGNCC	1 cut(s)	240
PsuI	RGATCY	1 cut(s)	271
PvuI	CGATCG	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	314
SacII	CCGCGG	1 cut(s)	181
SatI	GCNGC	2 cut(s)	181, 184
Sau3AI	GATC	2 cut(s)	22, 271
Sau96I	GGNCC	1 cut(s)	240
SchI	GAGTC	1 cut(s)	348
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	5 cut(s)	14, 77, 213, 352, 402
SfaNI	GCATC	2 cut(s)	102, 318
Sfr303I	CCGCGG	1 cut(s)	181
SgrBI	CCGCGG	1 cut(s)	181
SmiMI	CAYNNNNRTG	1 cut(s)	314
Sse9I	AATT	2 cut(s)	320, 405
SsiI	CCGC	5 cut(s)	91, 178, 180, 184, 243
SspI	AATATT	1 cut(s)	280
TaaI	ACNGT	2 cut(s)	149, 266
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	3 cut(s)	21, 77, 291
TasI	AATT	2 cut(s)	320, 405
TauI	GCSGC	2 cut(s)	183, 186
TfiI	GAWTC	1 cut(s)	442
TspDTI	ATGAA	5 cut(s)	189, 332, 344, 402, 468
TspGWI	ACGGA	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.