Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Forward (+)

26008707 .. 26009751

Gene Structure 1045 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008130

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGATTTGAGATCTGAAATCGATCGCCTTTCTCGCAAGCGCAAGGAGGACAATCTCCGACGCGTCGTTGAGACCTCGGAAGGAAATCTCCGCATCTTCGTTCTCGCTTTCTCCTCCTCCGACCACGACGTCGACGAAGGAGACAACGGCGGCTCTAGAAAACGCATGAGGCGAGACCGCGGCTGCAACGCCGTCGTTTCATCCACCAAGCTCGCCGCGGAGCCCCACAGGCCCGTCAGATCCGCCGTGAAACCCTATGACGACGGTGGGGATCTGAATATTGGGGAGTTCGAGAAACACACGAGGGGCATCGGCATGAAATTGCAGATGAAGATGGGCTGTAACGGACGTGGACTCGGCAAAAACGAGGAAGGTATTGAAGCCGAATTGAGGTCCAAAAATGAAGGTCTTGGTTTTGATTTCAAGCAGGGGACTAAGCTGCGGCGGCGGCGGCCCACATCGTTTGTGAAAGCCAAGGTGGTGGTGCACAAAAGTGTCGCTGCTGGTGACAATGATCACAAGAAGAGCAAAACAGAAATAACCAAAAAACCAAGCAGCCTAGATACTAGTACAGTGGAAGAACACAAGCCCAACGAGCAACCTAATGAGGCAATTACCAGTGCCGCCGCCACCGGCATGGAGAAGAAGACGACTACCAAAGGTGTCGATTTGCTGGGAAAGGTGATGGCTGATATGAGAAGACCTCTTGATGGAATCTTGGCCGACTTTGAGAACTTGAGTTTGAAAGGTACCAGCTCCAGGTGCATCTTAGCTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

260

Amino Acids

28.62

Weight (kDa)

9.59

Isoelectric Point (pI)

52.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AatII	GACGTC	1 cut(s)	132
Acc65I	GGTACC	1 cut(s)	749
AccB1I	GGYRCC	1 cut(s)	749
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	3 cut(s)	63, 180, 218
AclWI	GGATC	2 cut(s)	234, 279
AcoI	YGGCCR	1 cut(s)	720
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	2 cut(s)	571, 751
AfiI	CCNNNNNNNGG	3 cut(s)	390, 710, 759
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	3 cut(s)	380, 424, 745
AhlI	ACTAGT	1 cut(s)	566
AjiI	CACGTC	1 cut(s)	350
AjnI	CCWGG	1 cut(s)	758
AleI	CACNNNNGTG	1 cut(s)	492
AluBI	AGCT	4 cut(s)	211, 439, 756, 773
AluI	AGCT	4 cut(s)	211, 439, 756, 773
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	3 cut(s)	65, 135, 168
Alw44I	GTGCAC	1 cut(s)	485
AlwI	GGATC	2 cut(s)	234, 279
AoxI	GGCC	3 cut(s)	230, 452, 720
ApaLI	GTGCAC	1 cut(s)	485
ApeKI	GCWGC	4 cut(s)	183, 439, 500, 555
Asp718I	GGTACC	1 cut(s)	749
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	3 cut(s)	231, 393, 453
AsuHPI	GGTGA	2 cut(s)	518, 694
AvaII	GGWCC	1 cut(s)	393
BaeGI	GKGCMC	1 cut(s)	489
BanI	GGYRCC	1 cut(s)	749
BanII	GRGCYC	1 cut(s)	225
BauI	CACGAG	1 cut(s)	301
BbsI	GAAGAC	2 cut(s)	653, 706
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	4 cut(s)	170, 426, 487, 567
BccI	CCATC	3 cut(s)	328, 679, 704
BceAI	ACGGC	3 cut(s)	163, 176, 230
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	1 cut(s)	760
BclI	TGATCA	1 cut(s)	514
BcoDI	GTCTC	3 cut(s)	65, 135, 168
BcuI	ACTAGT	1 cut(s)	566
BfaI	CTAG	3 cut(s)	156, 560, 567
BglI	GCCNNNNNGGC	1 cut(s)	229
BglII	AGATCT	1 cut(s)	11
Bme1390I	CCNGG	1 cut(s)	760
Bme18I	GGWCC	1 cut(s)	393
BmgBI	CACGTC	1 cut(s)	350
BmgT120I	GGNCC	3 cut(s)	231, 393, 453
BmiI	GGNNCC	2 cut(s)	222, 751
BmrFI	CCNGG	1 cut(s)	760
BmsI	GCATC	3 cut(s)	102, 318, 774
BpiI	GAAGAC	2 cut(s)	653, 706
BplI	GAGNNNNNCTC	2 cut(s)	688, 720
BpmI	CTGGAG	1 cut(s)	742
BpuEI	CTTGAG	1 cut(s)	757
Bsa29I	ATCGAT	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	129
BsaI	GGTCTC	2 cut(s)	65, 168
BsaJI	CCNNGG	4 cut(s)	75, 178, 216, 474
Bsc4I	CCNNNNNNNGG	3 cut(s)	390, 710, 759
Bse118I	RCCGGY	1 cut(s)	632
Bse1I	ACTGG	1 cut(s)	618
BseBI	CCWGG	1 cut(s)	760
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	4 cut(s)	75, 178, 216, 474
BseGI	GGATG	1 cut(s)	200
BseLI	CCNNNNNNNGG	3 cut(s)	390, 710, 759
BseNI	ACTGG	1 cut(s)	618
BseRI	GAGGAG	2 cut(s)	103, 106
BseSI	GKGCMC	1 cut(s)	489
BseXI	GCAGC	4 cut(s)	170, 426, 487, 567
BseYI	CCCAGC	1 cut(s)	673
Bsh1236I	CGCG	3 cut(s)	63, 180, 218
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	3 cut(s)	232, 454, 722
BshNI	GGYRCC	1 cut(s)	749
BshVI	ATCGAT	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	489
BsiSI	CCGG	1 cut(s)	633
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	3 cut(s)	390, 710, 759
BsmAI	GTCTC	3 cut(s)	65, 135, 168
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	3 cut(s)	232, 454, 722
Bso31I	GGTCTC	2 cut(s)	65, 168
Bsp1286I	GDGCHC	2 cut(s)	225, 489
Bsp143I	GATC	5 cut(s)	11, 22, 239, 271, 514
BspANI	GGCC	3 cut(s)	232, 454, 722
BspDI	ATCGAT	1 cut(s)	21
BspFNI	CGCG	3 cut(s)	63, 180, 218
BspLI	GGNNCC	2 cut(s)	222, 751
BspPI	GGATC	2 cut(s)	234, 279
BspQI	GCTCTTC	1 cut(s)	518
BspT107I	GGYRCC	1 cut(s)	749
BspTNI	GGTCTC	2 cut(s)	65, 168
BsrFI	RCCGGY	1 cut(s)	632
BsrI	ACTGG	1 cut(s)	618
BssAI	RCCGGY	1 cut(s)	632
BssECI	CCNNGG	4 cut(s)	75, 178, 216, 474
BssMI	GATC	5 cut(s)	11, 22, 239, 271, 514
BssNI	GRCGYC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	301
BssT1I	CCWWGG	1 cut(s)	474
Bst2BI	CACGAG	1 cut(s)	301
Bst2UI	CCWGG	1 cut(s)	760
Bst4CI	ACNGT	2 cut(s)	266, 574
Bst6I	CTCTTC	1 cut(s)	518
BstACI	GRCGYC	1 cut(s)	129
BstC8I	GCNNGC	2 cut(s)	38, 213
BstDEI	CTNAG	2 cut(s)	435, 769
BstDSI	CCRYGG	2 cut(s)	178, 216
BstF5I	GGATG	1 cut(s)	200
BstFNI	CGCG	3 cut(s)	63, 180, 218
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	5 cut(s)	14, 25, 242, 274, 517
BstMAI	GTCTC	3 cut(s)	65, 135, 168
BstMBI	GATC	5 cut(s)	11, 22, 239, 271, 514
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	7 cut(s)	33, 229, 445, 448, 451, 595, 762
BstNI	CCWGG	1 cut(s)	760
BstSCI	CCNGG	1 cut(s)	758
BstSLI	GKGCMC	1 cut(s)	489
BstUI	CGCG	3 cut(s)	63, 180, 218
BstV1I	GCAGC	4 cut(s)	170, 426, 487, 567
BstV2I	GAAGAC	2 cut(s)	653, 706
BstX2I	RGATCY	3 cut(s)	11, 239, 271
BstXI	CCANNNNNNTGG	2 cut(s)	481, 637
BstYI	RGATCY	3 cut(s)	11, 239, 271
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	3 cut(s)	232, 454, 722
BsuTUI	ATCGAT	1 cut(s)	21
BtgI	CCRYGG	2 cut(s)	178, 216
BtrI	CACGTC	1 cut(s)	350
BtsCI	GGATG	1 cut(s)	200
BtsIMutI	CAGTG	2 cut(s)	579, 625
Cac8I	GCNNGC	2 cut(s)	38, 213
CfoI	GCGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	632
Cfr13I	GGNCC	3 cut(s)	231, 393, 453
Cfr42I	CCGCGG	2 cut(s)	181, 219
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	2 cut(s)	52, 69
Csp6I	GTAC	2 cut(s)	570, 750
CspCI	CAANNNNNGTGG	2 cut(s)	445, 480
CviAII	CATG	3 cut(s)	166, 316, 637
CviQI	GTAC	2 cut(s)	570, 750
DdeI	CTNAG	2 cut(s)	435, 769
DpnI	GATC	5 cut(s)	13, 24, 241, 273, 516
DpnII	GATC	5 cut(s)	11, 22, 239, 271, 514
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	720
Eam1104I	CTCTTC	1 cut(s)	518
EarI	CTCTTC	1 cut(s)	518
EciI	GGCGGA	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	474
Eco24I	GRGCYC	1 cut(s)	225
Eco31I	GGTCTC	2 cut(s)	65, 168
Eco47I	GGWCC	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	758
EcoT14I	CCWWGG	1 cut(s)	474
EcoT38I	GRGCYC	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	474
FaeI	CATG	3 cut(s)	169, 319, 640
FaiI	YATR	6 cut(s)	167, 258, 317, 638, 695, 776
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	3 cut(s)	165, 315, 636
FbaI	TGATCA	1 cut(s)	514
FblI	GTMKAC	1 cut(s)	132
FokI	GGATG	1 cut(s)	187
FriOI	GRGCYC	1 cut(s)	225
FspBI	CTAG	3 cut(s)	156, 560, 567
GlaI	GCGC	1 cut(s)	41
GsaI	CCCAGC	1 cut(s)	677
GsuI	CTGGAG	1 cut(s)	742
HaeIII	GGCC	3 cut(s)	232, 454, 722
HapII	CCGG	1 cut(s)	633
HgaI	GACGC	2 cut(s)	52, 69
HhaI	GCGC	1 cut(s)	42
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	3 cut(s)	169, 319, 640
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	2 cut(s)	354, 714
HpaII	CCGG	1 cut(s)	633
HphI	GGTGA	2 cut(s)	518, 694
Hpy166II	GTNNAC	3 cut(s)	133, 353, 487
Hpy188I	TCNGA	6 cut(s)	16, 59, 79, 121, 239, 276
Hpy188III	TCNNGA	3 cut(s)	156, 292, 707
Hpy8I	GTNNAC	3 cut(s)	133, 353, 487
Hpy99I	CGWCG	7 cut(s)	63, 68, 131, 134, 137, 197, 266
HpyAV	CCTTC	4 cut(s)	74, 131, 365, 398
HpyCH4III	ACNGT	2 cut(s)	266, 574
HpyCH4IV	ACGT	2 cut(s)	129, 349
HpyCH4V	TGCA	4 cut(s)	186, 325, 487, 765
HpyF10VI	GCNNNNNNNGC	7 cut(s)	33, 229, 445, 448, 451, 595, 762
HpyF3I	CTNAG	2 cut(s)	435, 769
HpySE526I	ACGT	2 cut(s)	129, 349
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	169, 319, 640
HspAI	GCGC	1 cut(s)	40
KpnI	GGTACC	1 cut(s)	753
Ksp22I	TGATCA	1 cut(s)	514
KspI	CCGCGG	2 cut(s)	181, 219
Kzo9I	GATC	5 cut(s)	11, 22, 239, 271, 514
LguI	GCTCTTC	1 cut(s)	518
LmnI	GCTCC	2 cut(s)	220, 761
LpnPI	CCDG	9 cut(s)	214, 413, 489, 631, 646, 659, 745, 766, 772
Lsp1109I	GCAGC	4 cut(s)	170, 426, 487, 567
LweI	GCATC	3 cut(s)	102, 318, 774
MaeI	CTAG	3 cut(s)	156, 560, 567
MaeII	ACGT	2 cut(s)	129, 349
MaeIII	GTNAC	2 cut(s)	341, 506
MalI	GATC	5 cut(s)	13, 24, 241, 273, 516
MboI	GATC	5 cut(s)	11, 22, 239, 271, 514
MboII	GAAGA	7 cut(s)	88, 343, 535, 590, 655, 658, 711
MflI	RGATCY	3 cut(s)	11, 239, 271
MhlI	GDGCHC	2 cut(s)	225, 489
MluCI	AATT	3 cut(s)	320, 386, 612
MluI	ACGCGT	1 cut(s)	61
MlyI	GAGTC	1 cut(s)	348
MmeI	TCCRAC	2 cut(s)	82, 144
MslI	CAYNNNNRTG	3 cut(s)	314, 492, 635
MspA1I	CMGCKG	2 cut(s)	180, 218
MspI	CCGG	1 cut(s)	633
MspR9I	CCNGG	1 cut(s)	760
MvaI	CCWGG	1 cut(s)	760
MvnI	CGCG	3 cut(s)	63, 180, 218
MwoI	GCNNNNNNNGC	7 cut(s)	33, 229, 445, 448, 451, 595, 762
NdeII	GATC	5 cut(s)	11, 22, 239, 271, 514
NlaIII	CATG	3 cut(s)	169, 319, 640
NlaIV	GGNNCC	2 cut(s)	222, 751
NmeAIII	GCCGAG	1 cut(s)	336
NmuCI	GTSAC	1 cut(s)	506
OliI	CACNNNNGTG	1 cut(s)	492
PciSI	GCTCTTC	1 cut(s)	518
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 169, 363
PfeI	GAWTC	1 cut(s)	714
Ple19I	CGATCG	1 cut(s)	25
PleI	GAGTC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	758
PspFI	CCCAGC	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	758
PspN4I	GGNNCC	2 cut(s)	222, 751
PspPI	GGNCC	3 cut(s)	231, 393, 453
PsuI	RGATCY	3 cut(s)	11, 239, 271
PvuI	CGATCG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	571, 751
RsaNI	GTAC	2 cut(s)	570, 750
RseI	CAYNNNNRTG	3 cut(s)	314, 492, 635
SacII	CCGCGG	2 cut(s)	181, 219
SalI	GTCGAC	1 cut(s)	131
SapI	GCTCTTC	1 cut(s)	518
Sau3AI	GATC	5 cut(s)	11, 22, 239, 271, 514
Sau96I	GGNCC	3 cut(s)	231, 393, 453
SchI	GAGTC	1 cut(s)	348
ScrFI	CCNGG	1 cut(s)	760
SduI	GDGCHC	2 cut(s)	225, 489
SfaNI	GCATC	3 cut(s)	102, 318, 774
Sfr303I	CCGCGG	2 cut(s)	181, 219
SgrBI	CCGCGG	2 cut(s)	181, 219
SgrDI	CGTCGACG	1 cut(s)	131
SinI	GGWCC	1 cut(s)	393
SmiMI	CAYNNNNRTG	3 cut(s)	314, 492, 635
SmlI	CTYRAG	1 cut(s)	736
SmoI	CTYRAG	1 cut(s)	736
SpeI	ACTAGT	1 cut(s)	566
Sse9I	AATT	3 cut(s)	320, 386, 612
SspI	AATATT	1 cut(s)	280
SspMI	CTAG	3 cut(s)	156, 560, 567
StyD4I	CCNGG	1 cut(s)	758
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	2 cut(s)	266, 574
TaiI	ACGT	2 cut(s)	132, 352
TaqI	TCGA	4 cut(s)	21, 132, 291, 666
TasI	AATT	3 cut(s)	320, 386, 612
TatI	WGTACW	1 cut(s)	569
TauI	GCSGC	9 cut(s)	153, 183, 218, 445, 448, 451, 454, 626, 629
TfiI	GAWTC	1 cut(s)	714
TscAI	CASTG	2 cut(s)	579, 625
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	4 cut(s)	183, 439, 500, 555
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	4 cut(s)	189, 332, 344, 417
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	2 cut(s)	579, 625
VneI	GTGCAC	1 cut(s)	485
VpaK11BI	GGWCC	1 cut(s)	393
XbaI	TCTAGA	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	3 cut(s)	156, 560, 567
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.