Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Reverse (-)

41890121 .. 41890750

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG248900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAGGCGAGACTGCGACTGCAACGCCGTCGTTTCATCCACCCAGCTCGCCGTGGAGCCCACCAGACCCGTCAGATTCGCCGTGAAACCCTATGACGATGGTAGGGATCTGAATATTGGGGAGTTCGAGAAACACACGAGGGGCATCGGCATGAAATTGCTGATGAAGATGGGATATAAAGGACGTGGACTCGGCAAAAACGAGGAAGGTATTGTGATCCCAATTGAAGCCGAATTGAGGCCCAAAAATGAAGGTCTTGGTTTTGATTACAAGGAGGGGACTAAGCTGCGGCGGCGGCCCACATCGTTTGTGAAAGCCAAGGTGGTGCACAAAAGTGTCGCTGCTGGTGACAATGATCACAAGAAGAGCAAAACAGAAATAACCAAAAAACCAAGCGGCCAAAACAATAGTATAGTGGAAGAACACAAGCCCCACAAGCAGCCGCGGCGGCCTAATGAGGCAATTACCAGTGCCGCCGCCACCGGGATGGAGAAGAAGACGACTACCAAAGGTGTCGATTTGCTGGGAAAGGTGATGGCTGATATGAGAAGACCTCTTGATGGAATCTTGGCCGACTTTGAGAATCTGAGTTTGATAGACAACAGCTCCAGGTGCATCTTAGCTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

209

Amino Acids

23.19

Weight (kDa)

9.61

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	46 - 87	1.5e-16	G-patch domain
G-patch_2	PF12656	49 - 90	3.3e-07	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	445
AciI	CCGC	9 cut(s)	289, 292, 295, 396, 443, 445, 448, 474, 477
AclWI	GGATC	2 cut(s)	114, 211
AcoI	YGGCCR	2 cut(s)	397, 570
AfiI	CCNNNNNNNGG	3 cut(s)	237, 483, 560
AgsI	TTSAA	1 cut(s)	227
AjiI	CACGTC	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	608
AleI	CACNNNNGTG	1 cut(s)	333
AluBI	AGCT	4 cut(s)	46, 286, 606, 623
AluI	AGCT	4 cut(s)	46, 286, 606, 623
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	1 cut(s)	3
Alw44I	GTGCAC	1 cut(s)	326
AlwI	GGATC	2 cut(s)	114, 211
AoxI	GGCC	5 cut(s)	239, 296, 397, 449, 570
ApaLI	GTGCAC	1 cut(s)	326
ApeKI	GCWGC	3 cut(s)	286, 341, 439
AspS9I	GGNCC	2 cut(s)	240, 297
AsuC2I	CCSGG	1 cut(s)	484
AsuHPI	GGTGA	2 cut(s)	359, 544
BaeGI	GKGCMC	1 cut(s)	330
BanII	GRGCYC	1 cut(s)	60
BauI	CACGAG	1 cut(s)	136
BbsI	GAAGAC	2 cut(s)	503, 556
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	3 cut(s)	273, 328, 451
BccI	CCATC	5 cut(s)	92, 163, 481, 529, 554
BceAI	ACGGC	3 cut(s)	11, 35, 65
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BciT130I	CCWGG	1 cut(s)	610
BclI	TGATCA	1 cut(s)	355
BcnI	CCSGG	1 cut(s)	484
BcoDI	GTCTC	1 cut(s)	3
BglI	GCCNNNNNGGC	1 cut(s)	448
Bme1390I	CCNGG	2 cut(s)	484, 610
BmgBI	CACGTC	1 cut(s)	185
BmgT120I	GGNCC	2 cut(s)	240, 297
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	2 cut(s)	484, 610
BmsI	GCATC	2 cut(s)	153, 624
BpiI	GAAGAC	2 cut(s)	503, 556
BplI	GAGNNNNNCTC	2 cut(s)	538, 570
BpmI	CTGGAG	1 cut(s)	592
BpuMI	CCSGG	1 cut(s)	484
BsaJI	CCNNGG	3 cut(s)	51, 318, 443
BsaXI	ACNNNNNCTCC	2 cut(s)	590, 620
Bsc4I	CCNNNNNNNGG	3 cut(s)	237, 483, 560
Bse1I	ACTGG	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	610
BseDI	CCNNGG	3 cut(s)	51, 318, 443
BseGI	GGATG	2 cut(s)	35, 492
BseLI	CCNNNNNNNGG	3 cut(s)	237, 483, 560
BseMII	CTCAG	1 cut(s)	578
BseNI	ACTGG	1 cut(s)	468
BseSI	GKGCMC	1 cut(s)	330
BseXI	GCAGC	3 cut(s)	273, 328, 451
BseYI	CCCAGC	2 cut(s)	42, 523
Bsh1236I	CGCG	1 cut(s)	445
BshFI	GGCC	5 cut(s)	241, 298, 399, 451, 572
BsiHKAI	GWGCWC	1 cut(s)	330
BsiSI	CCGG	1 cut(s)	483
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	3 cut(s)	237, 483, 560
BsmAI	GTCTC	1 cut(s)	3
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	5 cut(s)	241, 298, 399, 451, 572
Bsp1286I	GDGCHC	2 cut(s)	60, 330
Bsp143I	GATC	3 cut(s)	106, 216, 355
BspACI	CCGC	9 cut(s)	289, 292, 295, 396, 443, 445, 448, 474, 477
BspANI	GGCC	5 cut(s)	241, 298, 399, 451, 572
BspCNI	CTCAG	1 cut(s)	579
BspFNI	CGCG	1 cut(s)	445
BspLI	GGNNCC	1 cut(s)	57
BspPI	GGATC	2 cut(s)	114, 211
BspQI	GCTCTTC	1 cut(s)	359
BsrI	ACTGG	1 cut(s)	468
BssECI	CCNNGG	3 cut(s)	51, 318, 443
BssMI	GATC	3 cut(s)	106, 216, 355
BssSI	CACGAG	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	318
Bst2BI	CACGAG	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	610
Bst6I	CTCTTC	1 cut(s)	359
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	3 cut(s)	282, 587, 619
BstDSI	CCRYGG	2 cut(s)	51, 443
BstF5I	GGATG	2 cut(s)	35, 492
BstFNI	CGCG	1 cut(s)	445
BstKTI	GATC	3 cut(s)	109, 219, 358
BstMAI	GTCTC	1 cut(s)	3
BstMBI	GATC	3 cut(s)	106, 216, 355
BstMWI	GCNNNNNNNGC	6 cut(s)	292, 295, 436, 445, 448, 612
BstNI	CCWGG	1 cut(s)	610
BstSCI	CCNGG	2 cut(s)	482, 608
BstSLI	GKGCMC	1 cut(s)	330
BstUI	CGCG	1 cut(s)	445
BstV1I	GCAGC	3 cut(s)	273, 328, 451
BstV2I	GAAGAC	2 cut(s)	503, 556
BstX2I	RGATCY	1 cut(s)	106
BstXI	CCANNNNNNTGG	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	106
BsuRI	GGCC	5 cut(s)	241, 298, 399, 451, 572
BtgI	CCRYGG	2 cut(s)	51, 443
BtrI	CACGTC	1 cut(s)	185
BtsCI	GGATG	2 cut(s)	35, 492
BtsIMutI	CAGTG	1 cut(s)	475
Cac8I	GCNNGC	1 cut(s)	48
Cfr13I	GGNCC	2 cut(s)	240, 297
Cfr42I	CCGCGG	1 cut(s)	446
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviAII	CATG	1 cut(s)	151
DdeI	CTNAG	3 cut(s)	282, 587, 619
DpnI	GATC	3 cut(s)	108, 218, 357
DpnII	GATC	3 cut(s)	106, 216, 355
EaeI	YGGCCR	2 cut(s)	397, 570
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
Eco130I	CCWWGG	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	608
EcoT14I	CCWWGG	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	1 cut(s)	154
FaiI	YATR	6 cut(s)	93, 152, 177, 413, 545, 626
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	1 cut(s)	150
FbaI	TGATCA	1 cut(s)	355
FokI	GGATG	2 cut(s)	22, 499
FriOI	GRGCYC	1 cut(s)	60
GsaI	CCCAGC	2 cut(s)	46, 527
GsuI	CTGGAG	1 cut(s)	592
HaeIII	GGCC	5 cut(s)	241, 298, 399, 451, 572
HapII	CCGG	1 cut(s)	483
Hin1II	CATG	1 cut(s)	154
HinfI	GANTC	4 cut(s)	75, 189, 564, 583
HpaII	CCGG	1 cut(s)	483
HphI	GGTGA	2 cut(s)	359, 544
Hpy166II	GTNNAC	2 cut(s)	188, 328
Hpy188I	TCNGA	3 cut(s)	74, 111, 588
Hpy188III	TCNNGA	2 cut(s)	127, 557
Hpy8I	GTNNAC	2 cut(s)	188, 328
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	2 cut(s)	200, 245
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	3 cut(s)	21, 328, 615
HpyF10VI	GCNNNNNNNGC	6 cut(s)	292, 295, 436, 445, 448, 612
HpyF3I	CTNAG	3 cut(s)	282, 587, 619
HpySE526I	ACGT	1 cut(s)	184
Hsp92II	CATG	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	355
KspI	CCGCGG	1 cut(s)	446
Kzo9I	GATC	3 cut(s)	106, 216, 355
LguI	GCTCTTC	1 cut(s)	359
LmnI	GCTCC	2 cut(s)	55, 611
LpnPI	CCDG	8 cut(s)	56, 76, 330, 481, 496, 509, 595, 622
Lsp1109I	GCAGC	3 cut(s)	273, 328, 451
LweI	GCATC	2 cut(s)	153, 624
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	3 cut(s)	108, 218, 357
MboI	GATC	3 cut(s)	106, 216, 355
MboII	GAAGA	6 cut(s)	178, 376, 431, 505, 508, 561
MfeI	CAATTG	1 cut(s)	222
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	2 cut(s)	60, 330
MluCI	AATT	4 cut(s)	155, 222, 233, 462
MlyI	GAGTC	1 cut(s)	183
MnlI	CCTC	6 cut(s)	132, 196, 231, 268, 451, 564
MslI	CAYNNNNRTG	3 cut(s)	149, 333, 485
MspA1I	CMGCKG	1 cut(s)	445
MspI	CCGG	1 cut(s)	483
MspR9I	CCNGG	2 cut(s)	484, 610
MunI	CAATTG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	610
MvnI	CGCG	1 cut(s)	445
MwoI	GCNNNNNNNGC	6 cut(s)	292, 295, 436, 445, 448, 612
NciI	CCSGG	1 cut(s)	484
NdeII	GATC	3 cut(s)	106, 216, 355
NlaIII	CATG	1 cut(s)	154
NlaIV	GGNNCC	1 cut(s)	57
NmeAIII	GCCGAG	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	347
OliI	CACNNNNGTG	1 cut(s)	333
PciSI	GCTCTTC	1 cut(s)	359
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PfeI	GAWTC	3 cut(s)	75, 564, 583
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	608
PspFI	CCCAGC	2 cut(s)	42, 523
PspGI	CCWGG	1 cut(s)	608
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	2 cut(s)	240, 297
PsuI	RGATCY	1 cut(s)	106
RseI	CAYNNNNRTG	3 cut(s)	149, 333, 485
SacII	CCGCGG	1 cut(s)	446
SapI	GCTCTTC	1 cut(s)	359
Sau3AI	GATC	3 cut(s)	106, 216, 355
Sau96I	GGNCC	2 cut(s)	240, 297
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	2 cut(s)	484, 610
SduI	GDGCHC	2 cut(s)	60, 330
SfaNI	GCATC	2 cut(s)	153, 624
Sfr303I	CCGCGG	1 cut(s)	446
SgrBI	CCGCGG	1 cut(s)	446
SmiMI	CAYNNNNRTG	3 cut(s)	149, 333, 485
Sse9I	AATT	4 cut(s)	155, 222, 233, 462
SsiI	CCGC	9 cut(s)	289, 292, 295, 396, 443, 445, 448, 474, 477
SspI	AATATT	1 cut(s)	115
StyD4I	CCNGG	2 cut(s)	482, 608
StyI	CCWWGG	1 cut(s)	318
TaiI	ACGT	1 cut(s)	187
TaqI	TCGA	2 cut(s)	126, 516
TasI	AATT	4 cut(s)	155, 222, 233, 462
TauI	GCSGC	9 cut(s)	292, 295, 298, 399, 445, 448, 451, 476, 479
TfiI	GAWTC	3 cut(s)	75, 564, 583
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	3 cut(s)	286, 341, 439
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	4 cut(s)	24, 167, 179, 264
TspRI	CASTG	1 cut(s)	475
VneI	GTGCAC	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.