Rw4G016030

tuftelin-interacting protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
36843039 .. 36844371
1333 bp
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UTR
Exon/CDS
Intron
Rw4G016030.1

Sequence Viewer

Length: 852 bp
ATGGATTTGAGATCTGAAATCGATTGCCTTTCTCGCAAGCGCAAGGAGAACAATCTCCGACGCGTCGTTGAGACCTCGGAAGGAAATCTCCGCATCTTCGTTCTCGCTTTCTCCTCCTGCGACCACGACGTCGACGAAGGAGACAACGGCGGCTCCAGAAAACGCATGAGGCGAGACCGCGGCTGCAACGCCGTCGTTTCATCCACCAAGCTCGCCGCGGAGCCCACCAGGCCCGTCAGATCGGCCGTGAAACCCTATGACGACGGTGGGGATCTGAATATTGGGGAGTTCGAGAAACACACGAGGGGCATCGGCATGAAATTGCAGATGAAGATGGGCTATAACGGACGTGGACTCGGCAAAAACGAGGAAGGTATTGAAGCCGAATTGAGGTCCAAAAATGAAGGTCTTGGTTTTGATTACAAGCAGGGGACTAAGCTGCGGCGGCGGCGGCCCACATCGTTTGTGAAAGCCAAGGTGGTGCACAAAAGTGTCGCTGCTGGTGACAATGATCACAAGAAGAGCAAAACAGAAATAACCAAAAAACCAAGCAGCCTAGACACTAGTACAGGGGAAGAACACAAGCCCAACGAGCAGCCTAATGAGGCAATTACCAGTGCCGCCGCCACCGGGATGGAGAAGAAGACGATTACCAAAGGTGTCGATTTGCTGGGAAAGGTGATGGCTGATATGAGAAGACCTCTTGATGGAATCTTGGCCGACTTTGAGAACTTGAGTTTGAAAGCGATCTCAGACTCAATCCGTGTCAATGCATCCACCAATAGCTTCCCTATCACCATACAACCAAAACCCACAGAAATACAAGGAAAAGAAAAAAGTAGTACTGATTAA

Protein Analysis

283

Amino Acids

31.22

Weight (kDa)

9.43

Isoelectric Point (pI)

52.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 101 - 138 6e-07 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
AatII GACGTC 1 cut(s) 132
AccI GTMKAC 1 cut(s) 132
AccII CGCG 3 cut(s) 63, 180, 218
AclWI GGATC 1 cut(s) 279
AcoI YGGCCR 2 cut(s) 243, 717
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 2 cut(s) 568, 844
AfiI CCNNNNNNNGG 3 cut(s) 390, 630, 707
AflIII ACRYGT 1 cut(s) 61
AgsI TTSAA 2 cut(s) 380, 742
AhlI ACTAGT 1 cut(s) 563
AjiI CACGTC 1 cut(s) 350
AjnI CCWGG 1 cut(s) 227
AleI CACNNNNGTG 1 cut(s) 489
AluBI AGCT 3 cut(s) 211, 439, 786
AluI AGCT 3 cut(s) 211, 439, 786
Alw21I GWGCWC 1 cut(s) 486
Alw26I GTCTC 3 cut(s) 65, 135, 168
Alw44I GTGCAC 1 cut(s) 482
AlwI GGATC 1 cut(s) 279
AoxI GGCC 4 cut(s) 230, 243, 452, 717
ApaLI GTGCAC 1 cut(s) 482
ApeKI GCWGC 5 cut(s) 183, 439, 497, 552, 595
AspLEI GCGC 1 cut(s) 42
AspS9I GGNCC 3 cut(s) 231, 393, 453
AsuC2I CCSGG 1 cut(s) 631
AsuHPI GGTGA 3 cut(s) 515, 691, 787
AvaII GGWCC 1 cut(s) 393
BaeGI GKGCMC 1 cut(s) 486
BanII GRGCYC 1 cut(s) 225
BauI CACGAG 1 cut(s) 301
BbsI GAAGAC 2 cut(s) 650, 703
Bbv12I GWGCWC 1 cut(s) 486
BbvI GCAGC 5 cut(s) 170, 426, 484, 564, 607
BccI CCATC 4 cut(s) 328, 628, 676, 701
BceAI ACGGC 3 cut(s) 163, 176, 230
BcgI CGANNNNNNTGC 2 cut(s) 175, 209
BciT130I CCWGG 1 cut(s) 229
BclI TGATCA 1 cut(s) 511
BcnI CCSGG 1 cut(s) 631
BcoDI GTCTC 3 cut(s) 65, 135, 168
BcuI ACTAGT 1 cut(s) 563
BfaI CTAG 2 cut(s) 557, 564
BglI GCCNNNNNGGC 1 cut(s) 229
BglII AGATCT 1 cut(s) 11
BmcAI AGTACT 1 cut(s) 844
Bme1390I CCNGG 2 cut(s) 229, 631
Bme18I GGWCC 1 cut(s) 393
BmgBI CACGTC 1 cut(s) 350
BmgT120I GGNCC 3 cut(s) 231, 393, 453
BmiI GGNNCC 2 cut(s) 154, 222
BmrFI CCNGG 2 cut(s) 229, 631
BmsI GCATC 3 cut(s) 102, 318, 782
BpiI GAAGAC 2 cut(s) 650, 703
BplI GAGNNNNNCTC 2 cut(s) 685, 717
BpmI CTGGAG 1 cut(s) 139
BpuEI CTTGAG 1 cut(s) 754
BpuMI CCSGG 1 cut(s) 631
Bsa29I ATCGAT 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 129
BsaI GGTCTC 2 cut(s) 65, 168
BsaJI CCNNGG 4 cut(s) 75, 178, 216, 474
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 3 cut(s) 390, 630, 707
Bse1I ACTGG 1 cut(s) 615
BseBI CCWGG 1 cut(s) 229
BseCI ATCGAT 1 cut(s) 21
BseDI CCNNGG 4 cut(s) 75, 178, 216, 474
BseGI GGATG 3 cut(s) 200, 639, 773
BseLI CCNNNNNNNGG 3 cut(s) 390, 630, 707
BseMII CTCAG 1 cut(s) 765
BseNI ACTGG 1 cut(s) 615
BseRI GAGGAG 1 cut(s) 103
BseSI GKGCMC 1 cut(s) 486
BseX3I CGGCCG 1 cut(s) 243
BseXI GCAGC 5 cut(s) 170, 426, 484, 564, 607
BseYI CCCAGC 1 cut(s) 670
Bsh1236I CGCG 3 cut(s) 63, 180, 218
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 4 cut(s) 232, 245, 454, 719
BshVI ATCGAT 1 cut(s) 21
BsiEI CGRYCG 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 486
BsiSI CCGG 1 cut(s) 630
BslFI GGGAC 1 cut(s) 445
BslI CCNNNNNNNGG 3 cut(s) 390, 630, 707
BsmAI GTCTC 3 cut(s) 65, 135, 168
BsmFI GGGAC 1 cut(s) 445
BsnI GGCC 4 cut(s) 232, 245, 454, 719
Bso31I GGTCTC 2 cut(s) 65, 168
Bsp1286I GDGCHC 2 cut(s) 225, 486
Bsp143I GATC 5 cut(s) 11, 239, 271, 511, 747
BspANI GGCC 4 cut(s) 232, 245, 454, 719
BspCNI CTCAG 1 cut(s) 764
BspDI ATCGAT 1 cut(s) 21
BspFNI CGCG 3 cut(s) 63, 180, 218
BspLI GGNNCC 2 cut(s) 154, 222
BspPI GGATC 1 cut(s) 279
BspQI GCTCTTC 1 cut(s) 515
BspTNI GGTCTC 2 cut(s) 65, 168
BsrI ACTGG 1 cut(s) 615
BssECI CCNNGG 4 cut(s) 75, 178, 216, 474
BssMI GATC 5 cut(s) 11, 239, 271, 511, 747
BssNI GRCGYC 1 cut(s) 129
BssSI CACGAG 1 cut(s) 301
BssT1I CCWWGG 1 cut(s) 474
Bst2BI CACGAG 1 cut(s) 301
Bst2UI CCWGG 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 266
Bst6I CTCTTC 1 cut(s) 515
BstACI GRCGYC 1 cut(s) 129
BstC8I GCNNGC 2 cut(s) 38, 213
BstDEI CTNAG 2 cut(s) 435, 751
BstDSI CCRYGG 2 cut(s) 178, 216
BstF5I GGATG 3 cut(s) 200, 639, 773
BstFNI CGCG 3 cut(s) 63, 180, 218
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 5 cut(s) 14, 242, 274, 514, 750
BstMAI GTCTC 3 cut(s) 65, 135, 168
BstMBI GATC 5 cut(s) 11, 239, 271, 511, 747
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 6 cut(s) 33, 229, 445, 448, 451, 592
BstNI CCWGG 1 cut(s) 229
BstSCI CCNGG 2 cut(s) 227, 629
BstSLI GKGCMC 1 cut(s) 486
BstUI CGCG 3 cut(s) 63, 180, 218
BstV1I GCAGC 5 cut(s) 170, 426, 484, 564, 607
BstV2I GAAGAC 2 cut(s) 650, 703
BstX2I RGATCY 2 cut(s) 11, 271
BstXI CCANNNNNNTGG 1 cut(s) 634
BstYI RGATCY 2 cut(s) 11, 271
BstZI CGGCCG 1 cut(s) 243
Bsu15I ATCGAT 1 cut(s) 21
BsuRI GGCC 4 cut(s) 232, 245, 454, 719
BsuTUI ATCGAT 1 cut(s) 21
BtgI CCRYGG 2 cut(s) 178, 216
BtrI CACGTC 1 cut(s) 350
BtsCI GGATG 3 cut(s) 200, 639, 773
BtsIMutI CAGTG 1 cut(s) 622
Cac8I GCNNGC 2 cut(s) 38, 213
CfoI GCGC 1 cut(s) 42
Cfr13I GGNCC 3 cut(s) 231, 393, 453
Cfr42I CCGCGG 2 cut(s) 181, 219
ClaI ATCGAT 1 cut(s) 21
CseI GACGC 2 cut(s) 52, 69
Csp6I GTAC 2 cut(s) 567, 843
CspCI CAANNNNNGTGG 2 cut(s) 445, 480
CviAII CATG 2 cut(s) 166, 316
CviQI GTAC 2 cut(s) 567, 843
DdeI CTNAG 2 cut(s) 435, 751
DpnI GATC 5 cut(s) 13, 241, 273, 513, 749
DpnII GATC 5 cut(s) 11, 239, 271, 511, 747
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
EaeI YGGCCR 2 cut(s) 243, 717
EagI CGGCCG 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 515
EarI CTCTTC 1 cut(s) 515
EclXI CGGCCG 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 474
Eco24I GRGCYC 1 cut(s) 225
Eco31I GGTCTC 2 cut(s) 65, 168
Eco47I GGWCC 1 cut(s) 393
Eco52I CGGCCG 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 474
EcoT22I ATGCAT 1 cut(s) 775
EcoT38I GRGCYC 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 474
FaeI CATG 2 cut(s) 169, 319
FaiI YATR 6 cut(s) 167, 258, 317, 342, 692, 800
FaqI GGGAC 1 cut(s) 445
FatI CATG 2 cut(s) 165, 315
FbaI TGATCA 1 cut(s) 511
FblI GTMKAC 1 cut(s) 132
FokI GGATG 3 cut(s) 187, 646, 760
FriOI GRGCYC 1 cut(s) 225
FspBI CTAG 2 cut(s) 557, 564
GlaI GCGC 1 cut(s) 41
GsaI CCCAGC 1 cut(s) 674
GsuI CTGGAG 1 cut(s) 139
HaeIII GGCC 4 cut(s) 232, 245, 454, 719
HapII CCGG 1 cut(s) 630
HgaI GACGC 2 cut(s) 52, 69
HhaI GCGC 1 cut(s) 42
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 2 cut(s) 169, 319
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 3 cut(s) 354, 711, 755
HpaII CCGG 1 cut(s) 630
HphI GGTGA 3 cut(s) 515, 691, 787
Hpy166II GTNNAC 3 cut(s) 133, 353, 484
Hpy188I TCNGA 6 cut(s) 16, 59, 79, 239, 276, 754
Hpy188III TCNNGA 3 cut(s) 156, 292, 704
Hpy8I GTNNAC 3 cut(s) 133, 353, 484
Hpy99I CGWCG 7 cut(s) 63, 68, 131, 134, 137, 197, 266
HpyAV CCTTC 4 cut(s) 74, 131, 365, 398
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4IV ACGT 2 cut(s) 129, 349
HpyCH4V TGCA 4 cut(s) 186, 325, 484, 773
HpyF10VI GCNNNNNNNGC 6 cut(s) 33, 229, 445, 448, 451, 592
HpyF3I CTNAG 2 cut(s) 435, 751
HpySE526I ACGT 2 cut(s) 129, 349
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 2 cut(s) 169, 319
HspAI GCGC 1 cut(s) 40
Ksp22I TGATCA 1 cut(s) 511
KspI CCGCGG 2 cut(s) 181, 219
Kzo9I GATC 5 cut(s) 11, 239, 271, 511, 747
LguI GCTCTTC 1 cut(s) 515
LmnI GCTCC 2 cut(s) 158, 220
Lsp1109I GCAGC 5 cut(s) 170, 426, 484, 564, 607
LweI GCATC 3 cut(s) 102, 318, 782
MaeI CTAG 2 cut(s) 557, 564
MaeII ACGT 2 cut(s) 129, 349
MaeIII GTNAC 1 cut(s) 503
MalI GATC 5 cut(s) 13, 241, 273, 513, 749
MboI GATC 5 cut(s) 11, 239, 271, 511, 747
MboII GAAGA 7 cut(s) 88, 343, 532, 587, 652, 655, 708
MflI RGATCY 2 cut(s) 11, 271
MhlI GDGCHC 2 cut(s) 225, 486
MluCI AATT 3 cut(s) 320, 386, 609
MluI ACGCGT 1 cut(s) 61
MlyI GAGTC 2 cut(s) 348, 749
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 8 cut(s) 85, 124, 162, 297, 361, 384, 598, 711
Mph1103I ATGCAT 1 cut(s) 775
MseI TTAA 1 cut(s) 850
MslI CAYNNNNRTG 3 cut(s) 314, 489, 632
MspA1I CMGCKG 2 cut(s) 180, 218
MspI CCGG 1 cut(s) 630
MspR9I CCNGG 2 cut(s) 229, 631
MvaI CCWGG 1 cut(s) 229
MvnI CGCG 3 cut(s) 63, 180, 218
MwoI GCNNNNNNNGC 6 cut(s) 33, 229, 445, 448, 451, 592
NciI CCSGG 1 cut(s) 631
NdeII GATC 5 cut(s) 11, 239, 271, 511, 747
NlaIII CATG 2 cut(s) 169, 319
NlaIV GGNNCC 2 cut(s) 154, 222
NmeAIII GCCGAG 1 cut(s) 336
NmuCI GTSAC 1 cut(s) 503
NsiI ATGCAT 1 cut(s) 775
OliI CACNNNNGTG 1 cut(s) 489
PciSI GCTCTTC 1 cut(s) 515
PcsI WCGNNNNNNNCGW 3 cut(s) 132, 169, 363
PfeI GAWTC 1 cut(s) 711
PleI GAGTC 2 cut(s) 348, 749
PpsI GAGTC 2 cut(s) 348, 749
Psp6I CCWGG 1 cut(s) 227
PspFI CCCAGC 1 cut(s) 670
PspGI CCWGG 1 cut(s) 227
PspN4I GGNNCC 2 cut(s) 154, 222
PspPI GGNCC 3 cut(s) 231, 393, 453
PsuI RGATCY 2 cut(s) 11, 271
RsaI GTAC 2 cut(s) 568, 844
RsaNI GTAC 2 cut(s) 567, 843
RseI CAYNNNNRTG 3 cut(s) 314, 489, 632
SacII CCGCGG 2 cut(s) 181, 219
SalI GTCGAC 1 cut(s) 131
SapI GCTCTTC 1 cut(s) 515
SaqAI TTAA 1 cut(s) 850
Sau3AI GATC 5 cut(s) 11, 239, 271, 511, 747
Sau96I GGNCC 3 cut(s) 231, 393, 453
ScaI AGTACT 1 cut(s) 844
SchI GAGTC 2 cut(s) 348, 749
ScrFI CCNGG 2 cut(s) 229, 631
SduI GDGCHC 2 cut(s) 225, 486
SfaNI GCATC 3 cut(s) 102, 318, 782
Sfr303I CCGCGG 2 cut(s) 181, 219
SgrBI CCGCGG 2 cut(s) 181, 219
SgrDI CGTCGACG 1 cut(s) 131
SinI GGWCC 1 cut(s) 393
SmiMI CAYNNNNRTG 3 cut(s) 314, 489, 632
SmlI CTYRAG 1 cut(s) 733
SmoI CTYRAG 1 cut(s) 733
SpeI ACTAGT 1 cut(s) 563
Sse9I AATT 3 cut(s) 320, 386, 609
SspI AATATT 1 cut(s) 280
SspMI CTAG 2 cut(s) 557, 564
StyD4I CCNGG 2 cut(s) 227, 629
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 1 cut(s) 266
TaiI ACGT 2 cut(s) 132, 352
TaqI TCGA 4 cut(s) 21, 132, 291, 663
TasI AATT 3 cut(s) 320, 386, 609
TatI WGTACW 2 cut(s) 566, 842
TauI GCSGC 9 cut(s) 153, 183, 218, 445, 448, 451, 454, 623, 626
TfiI GAWTC 1 cut(s) 711
Tru1I TTAA 1 cut(s) 850
Tru9I TTAA 1 cut(s) 850
TscAI CASTG 1 cut(s) 622
TseFI GTSAC 1 cut(s) 503
TseI GCWGC 5 cut(s) 183, 439, 497, 552, 595
Tsp45I GTSAC 1 cut(s) 503
TspDTI ATGAA 4 cut(s) 189, 332, 344, 417
TspGWI ACGGA 2 cut(s) 360, 752
TspRI CASTG 1 cut(s) 622
VneI GTGCAC 1 cut(s) 482
VpaK11BI GGWCC 1 cut(s) 393
XmiI GTMKAC 1 cut(s) 132
XspI CTAG 2 cut(s) 557, 564
ZraI GACGTC 1 cut(s) 130
ZrmI AGTACT 1 cut(s) 844
Zsp2I ATGCAT 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.