Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Reverse (-)

36869476 .. 36870072

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG186300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAGGCGACACCGCGGCTGCAACGCCGTCGTTTCATCCACCAAGCTCGCCGCGGAGCCCACCAGGCCCGTCAGATCCGCCGTGAAACCCTATGACGACGGTGGGGATCTGAATAAACACACGAGGGGCATCGGCATGAAATTGCAGATGAAGATGGGCTATAACGAACGTGGACTCGGCAAAAACGAGGAAGGTATTGAAGCCGAATTGAGGTCCAAAAATGAAGGTCTTGGTTTTGATTACAAGGAGGGGACTAAGCTGCGGCGGCGGCGGCCCACATCGTTTGTGAAAGCCAAGGTGGTGCACAAAAGTGTCGCTGCTGGTGACAATGATCACAAGAAGAGCAAAACAGAAATAACCAAAAAACCAAGCAGCCTAGACACTAGTACAGTGGAAGAACACAAGCCCAACGAGGAGCCTAATGAGGCAATTACCAGTGCCGCCGCCACCGGGATGGAGAAGAAGACGATTACTAAAGGTGTCGATTTGCTGGGAAAGGTGATGGCTGATATGAGAAGACCTCTTGATGGAATCTTGGCCGACTTTGAGAACTTGAGTTTGAAAGGTACCAGCTCCACGTGCATCGTAGCTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

198

Amino Acids

21.68

Weight (kDa)

9.6

Isoelectric Point (pI)

48.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	41 - 78	1.1e-06	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	566
AccB1I	GGYRCC	1 cut(s)	566
AccII	CGCG	2 cut(s)	15, 53
AclWI	GGATC	2 cut(s)	69, 114
AcoI	YGGCCR	1 cut(s)	537
AcvI	CACGTG	1 cut(s)	579
AfaI	GTAC	2 cut(s)	388, 568
AfiI	CCNNNNNNNGG	3 cut(s)	210, 450, 527
AgsI	TTSAA	2 cut(s)	200, 562
AhlI	ACTAGT	1 cut(s)	383
AjnI	CCWGG	1 cut(s)	62
AleI	CACNNNNGTG	1 cut(s)	309
AluBI	AGCT	4 cut(s)	46, 259, 573, 590
AluI	AGCT	4 cut(s)	46, 259, 573, 590
Alw21I	GWGCWC	1 cut(s)	306
Alw44I	GTGCAC	1 cut(s)	302
AlwI	GGATC	2 cut(s)	69, 114
AoxI	GGCC	3 cut(s)	65, 272, 537
ApaLI	GTGCAC	1 cut(s)	302
ApeKI	GCWGC	4 cut(s)	18, 259, 317, 372
Asp718I	GGTACC	1 cut(s)	566
AspS9I	GGNCC	3 cut(s)	66, 213, 273
AsuC2I	CCSGG	1 cut(s)	451
AsuHPI	GGTGA	2 cut(s)	335, 511
AvaII	GGWCC	1 cut(s)	213
BaeGI	GKGCMC	1 cut(s)	306
BanI	GGYRCC	1 cut(s)	566
BanII	GRGCYC	1 cut(s)	60
BauI	CACGAG	1 cut(s)	121
BbrPI	CACGTG	1 cut(s)	579
BbsI	GAAGAC	2 cut(s)	470, 523
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	4 cut(s)	5, 246, 304, 384
BccI	CCATC	4 cut(s)	148, 448, 496, 521
BceAI	ACGGC	2 cut(s)	11, 65
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BciT130I	CCWGG	1 cut(s)	64
BclI	TGATCA	1 cut(s)	331
BcnI	CCSGG	1 cut(s)	451
BcuI	ACTAGT	1 cut(s)	383
BfaI	CTAG	2 cut(s)	377, 384
BglI	GCCNNNNNGGC	1 cut(s)	64
Bme1390I	CCNGG	2 cut(s)	64, 451
Bme18I	GGWCC	1 cut(s)	213
BmgT120I	GGNCC	3 cut(s)	66, 213, 273
BmiI	GGNNCC	3 cut(s)	57, 417, 568
BmrFI	CCNGG	2 cut(s)	64, 451
BmsI	GCATC	2 cut(s)	138, 591
BpiI	GAAGAC	2 cut(s)	470, 523
BplI	GAGNNNNNCTC	2 cut(s)	505, 537
BpuEI	CTTGAG	1 cut(s)	574
BpuMI	CCSGG	1 cut(s)	451
BsaAI	YACGTR	1 cut(s)	579
BsaJI	CCNNGG	3 cut(s)	13, 51, 294
Bsc4I	CCNNNNNNNGG	3 cut(s)	210, 450, 527
Bse1I	ACTGG	1 cut(s)	435
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	3 cut(s)	13, 51, 294
BseGI	GGATG	2 cut(s)	35, 459
BseLI	CCNNNNNNNGG	3 cut(s)	210, 450, 527
BseNI	ACTGG	1 cut(s)	435
BseRI	GAGGAG	1 cut(s)	428
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	4 cut(s)	5, 246, 304, 384
BseYI	CCCAGC	1 cut(s)	490
Bsh1236I	CGCG	2 cut(s)	15, 53
BshFI	GGCC	3 cut(s)	67, 274, 539
BshNI	GGYRCC	1 cut(s)	566
BsiHKAI	GWGCWC	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	450
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	3 cut(s)	210, 450, 527
BsmFI	GGGAC	1 cut(s)	265
BsnI	GGCC	3 cut(s)	67, 274, 539
Bsp1286I	GDGCHC	2 cut(s)	60, 306
Bsp143I	GATC	3 cut(s)	74, 106, 331
BspANI	GGCC	3 cut(s)	67, 274, 539
BspFNI	CGCG	2 cut(s)	15, 53
BspLI	GGNNCC	3 cut(s)	57, 417, 568
BspPI	GGATC	2 cut(s)	69, 114
BspQI	GCTCTTC	1 cut(s)	335
BspT107I	GGYRCC	1 cut(s)	566
BsrI	ACTGG	1 cut(s)	435
BssECI	CCNNGG	3 cut(s)	13, 51, 294
BssMI	GATC	3 cut(s)	74, 106, 331
BssSI	CACGAG	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	294
Bst2BI	CACGAG	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	2 cut(s)	101, 391
Bst6I	CTCTTC	1 cut(s)	335
BstBAI	YACGTR	1 cut(s)	579
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	255
BstDSI	CCRYGG	2 cut(s)	13, 51
BstF5I	GGATG	2 cut(s)	35, 459
BstFNI	CGCG	2 cut(s)	15, 53
BstKTI	GATC	3 cut(s)	77, 109, 334
BstMBI	GATC	3 cut(s)	74, 106, 331
BstMWI	GCNNNNNNNGC	5 cut(s)	64, 265, 268, 271, 579
BstNI	CCWGG	1 cut(s)	64
BstSCI	CCNGG	2 cut(s)	62, 449
BstSLI	GKGCMC	1 cut(s)	306
BstUI	CGCG	2 cut(s)	15, 53
BstV1I	GCAGC	4 cut(s)	5, 246, 304, 384
BstV2I	GAAGAC	2 cut(s)	470, 523
BstX2I	RGATCY	2 cut(s)	74, 106
BstXI	CCANNNNNNTGG	1 cut(s)	454
BstYI	RGATCY	2 cut(s)	74, 106
BsuRI	GGCC	3 cut(s)	67, 274, 539
BtgI	CCRYGG	2 cut(s)	13, 51
BtsCI	GGATG	2 cut(s)	35, 459
BtsIMutI	CAGTG	2 cut(s)	396, 442
Cac8I	GCNNGC	1 cut(s)	48
Cfr13I	GGNCC	3 cut(s)	66, 213, 273
Cfr42I	CCGCGG	2 cut(s)	16, 54
Csp6I	GTAC	2 cut(s)	387, 567
CspCI	CAANNNNNGTGG	2 cut(s)	265, 300
CviAII	CATG	1 cut(s)	136
CviQI	GTAC	2 cut(s)	387, 567
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	3 cut(s)	76, 108, 333
DpnII	GATC	3 cut(s)	74, 106, 331
EaeI	YGGCCR	1 cut(s)	537
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
EciI	GGCGGA	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	213
Eco72I	CACGTG	1 cut(s)	579
EcoRII	CCWGG	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	1 cut(s)	139
FaiI	YATR	5 cut(s)	93, 137, 162, 512, 593
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	1 cut(s)	135
FbaI	TGATCA	1 cut(s)	331
FokI	GGATG	2 cut(s)	22, 466
FriOI	GRGCYC	1 cut(s)	60
FspBI	CTAG	2 cut(s)	377, 384
GsaI	CCCAGC	1 cut(s)	494
HaeIII	GGCC	3 cut(s)	67, 274, 539
HapII	CCGG	1 cut(s)	450
Hin1II	CATG	1 cut(s)	139
HinfI	GANTC	2 cut(s)	174, 531
HpaII	CCGG	1 cut(s)	450
HphI	GGTGA	2 cut(s)	335, 511
Hpy166II	GTNNAC	2 cut(s)	173, 304
Hpy188I	TCNGA	2 cut(s)	74, 111
Hpy188III	TCNNGA	1 cut(s)	524
Hpy8I	GTNNAC	2 cut(s)	173, 304
Hpy99I	CGWCG	2 cut(s)	32, 101
HpyAV	CCTTC	2 cut(s)	185, 218
HpyCH4III	ACNGT	2 cut(s)	101, 391
HpyCH4IV	ACGT	2 cut(s)	169, 578
HpyCH4V	TGCA	4 cut(s)	21, 145, 304, 582
HpyF10VI	GCNNNNNNNGC	5 cut(s)	64, 265, 268, 271, 579
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	2 cut(s)	169, 578
Hsp92II	CATG	1 cut(s)	139
KpnI	GGTACC	1 cut(s)	570
Ksp22I	TGATCA	1 cut(s)	331
KspI	CCGCGG	2 cut(s)	16, 54
Kzo9I	GATC	3 cut(s)	74, 106, 331
LguI	GCTCTTC	1 cut(s)	335
LmnI	GCTCC	3 cut(s)	55, 415, 578
LpnPI	CCDG	7 cut(s)	49, 76, 306, 448, 463, 476, 583
Lsp1109I	GCAGC	4 cut(s)	5, 246, 304, 384
LweI	GCATC	2 cut(s)	138, 591
MaeI	CTAG	2 cut(s)	377, 384
MaeII	ACGT	2 cut(s)	169, 578
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	3 cut(s)	76, 108, 333
MboI	GATC	3 cut(s)	74, 106, 331
MboII	GAAGA	6 cut(s)	163, 352, 407, 472, 475, 528
MflI	RGATCY	2 cut(s)	74, 106
MhlI	GDGCHC	2 cut(s)	60, 306
MluCI	AATT	3 cut(s)	140, 206, 429
MlyI	GAGTC	1 cut(s)	168
MnlI	CCTC	7 cut(s)	117, 181, 204, 241, 406, 418, 531
MslI	CAYNNNNRTG	3 cut(s)	134, 309, 452
MspA1I	CMGCKG	2 cut(s)	15, 53
MspI	CCGG	1 cut(s)	450
MspR9I	CCNGG	2 cut(s)	64, 451
MvaI	CCWGG	1 cut(s)	64
MvnI	CGCG	2 cut(s)	15, 53
MwoI	GCNNNNNNNGC	5 cut(s)	64, 265, 268, 271, 579
NciI	CCSGG	1 cut(s)	451
NdeII	GATC	3 cut(s)	74, 106, 331
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	3 cut(s)	57, 417, 568
NmeAIII	GCCGAG	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	323
OliI	CACNNNNGTG	1 cut(s)	309
PciSI	GCTCTTC	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	531
PleI	GAGTC	1 cut(s)	168
PmaCI	CACGTG	1 cut(s)	579
PmlI	CACGTG	1 cut(s)	579
PpsI	GAGTC	1 cut(s)	168
Ppu21I	YACGTR	1 cut(s)	579
Psp6I	CCWGG	1 cut(s)	62
PspCI	CACGTG	1 cut(s)	579
PspFI	CCCAGC	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	3 cut(s)	57, 417, 568
PspPI	GGNCC	3 cut(s)	66, 213, 273
PsuI	RGATCY	2 cut(s)	74, 106
RsaI	GTAC	2 cut(s)	388, 568
RsaNI	GTAC	2 cut(s)	387, 567
RseI	CAYNNNNRTG	3 cut(s)	134, 309, 452
SacII	CCGCGG	2 cut(s)	16, 54
SapI	GCTCTTC	1 cut(s)	335
Sau3AI	GATC	3 cut(s)	74, 106, 331
Sau96I	GGNCC	3 cut(s)	66, 213, 273
SchI	GAGTC	1 cut(s)	168
ScrFI	CCNGG	2 cut(s)	64, 451
SduI	GDGCHC	2 cut(s)	60, 306
SfaNI	GCATC	2 cut(s)	138, 591
Sfr303I	CCGCGG	2 cut(s)	16, 54
SgrBI	CCGCGG	2 cut(s)	16, 54
SinI	GGWCC	1 cut(s)	213
SmiMI	CAYNNNNRTG	3 cut(s)	134, 309, 452
SmlI	CTYRAG	1 cut(s)	553
SmoI	CTYRAG	1 cut(s)	553
SpeI	ACTAGT	1 cut(s)	383
Sse9I	AATT	3 cut(s)	140, 206, 429
SspMI	CTAG	2 cut(s)	377, 384
StyD4I	CCNGG	2 cut(s)	62, 449
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	101, 391
TaiI	ACGT	2 cut(s)	172, 581
TaqI	TCGA	1 cut(s)	483
TasI	AATT	3 cut(s)	140, 206, 429
TatI	WGTACW	1 cut(s)	386
TauI	GCSGC	8 cut(s)	18, 53, 265, 268, 271, 274, 443, 446
TfiI	GAWTC	1 cut(s)	531
TscAI	CASTG	2 cut(s)	396, 442
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	4 cut(s)	18, 259, 317, 372
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	4 cut(s)	24, 152, 164, 237
TspRI	CASTG	2 cut(s)	396, 442
VneI	GTGCAC	1 cut(s)	302
VpaK11BI	GGWCC	1 cut(s)	213
XspI	CTAG	2 cut(s)	377, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.