Rroxscaffold_1G00012060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001296
Physical Location & Seq
Forward (+)
14960214 .. 14972255
12042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00012060.1

Sequence Viewer

Length: 900 bp
ATGACGTCCAACTCTAGCCTTCTTAGCCAAAGACACCTTCAACACATCATTCTCAACCGAAGAGACAACACCGGCTCAAAATCCAACTCCACGAGCACGGGTACCTCTACATCGATGCTCTTAGTGCGCTTACGGAAGTCCAACGCCGCCGTGTTAGCCCTTCACCCAAACCCCAATCACGGCGGTGCCAGGTCCGACGAAACTACGACTAATCTACCTCGATTCACAAGACTAAGACTCGGCCACCAAGATCCTAGACAAGCGGATCCTTTTGAAACCTATACCACCACCAAACGGACCCGAGATCTGCCACACACGACCAACGACGCGGGCTCGCCGAGAACCCTCGACTTGGCTGCAAACCCGCTGACCCGAGCTACCCGAATTTCGCCTTCCGGTGACCAATGGCGGTACCACCACCACAGACCGACGCACCTCGGTCTCCCCCGTTTGGATCCCAGCCGTTCACATTCACCGATTCACACCGTAGATGGCAAATTGAAGATTAGGGTAAACGTGGTTGAAGCTAAGAGGTCTCTTGCTGTTGCAATTGTTCGTAGATCTGAATTTGATCTCGCATCGATATATTTGAGTTCCAAAACCTATCGTTGTTCTCGCAAGCGCAAGGGTAACAATCTCCGACGTGTAGTTGAGACCTCGGATGAAAGTCTCCATATTGTTGCTCTCGCTTCCTCCTGCTCCGACCACAACCACGACAACGGAGAAAACGGCGACTCTAGAAAAAGAATGAGGCGAGACCTCGCCTGCAACGCCGTGGAGCCCACTAGGCCCGTTAGGTCCACCGTGAAACCCTATGAAGCTGGGGATCTGAATATTGAGGAGTTCGAAAAACACACAAAGGGGCATCAACATGAAATTGCTGATGAAAATGGGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

33.56

Weight (kDa)

10.17

Isoelectric Point (pI)

52.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
Acc65I GGTACC 2 cut(s) 101, 411
AccB1I GGYRCC 3 cut(s) 101, 185, 411
AccII CGCG 1 cut(s) 329
AciI CCGC 6 cut(s) 147, 183, 263, 329, 365, 409
AclWI GGATC 6 cut(s) 245, 260, 273, 449, 462, 834
AcoI YGGCCR 1 cut(s) 241
AcsI RAATTY 2 cut(s) 384, 566
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 103, 413
AfiI CCNNNNNNNGG 4 cut(s) 179, 294, 352, 451
AflIII ACRYGT 1 cut(s) 643
AgsI TTSAA 4 cut(s) 41, 275, 502, 524
AjiI CACGTC 1 cut(s) 644
AjnI CCWGG 1 cut(s) 188
AjuI GAANNNNNNNTTGG 2 cut(s) 21, 53
AleI CACNNNNGTG 1 cut(s) 183
AluBI AGCT 3 cut(s) 377, 527, 821
AluI AGCT 3 cut(s) 377, 527, 821
Alw21I GWGCWC 1 cut(s) 98
Alw26I GTCTC 6 cut(s) 57, 446, 540, 647, 674, 750
AlwI GGATC 6 cut(s) 245, 260, 273, 449, 462, 834
Ama87I CYCGRG 2 cut(s) 300, 372
AoxI GGCC 2 cut(s) 241, 788
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 2 cut(s) 384, 566
Asp718I GGTACC 2 cut(s) 101, 411
AspLEI GCGC 2 cut(s) 129, 624
AspS9I GGNCC 4 cut(s) 192, 297, 789, 798
AsuHPI GGTGA 3 cut(s) 155, 410, 465
AsuII TTCGAA 1 cut(s) 846
AvaI CYCGRG 2 cut(s) 300, 372
AvaII GGWCC 3 cut(s) 192, 297, 798
BamHI GGATCC 2 cut(s) 265, 454
BanI GGYRCC 3 cut(s) 101, 185, 411
BanII GRGCYC 2 cut(s) 335, 783
BauI CACGAG 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 343
BccI CCATC 1 cut(s) 485
BceAI ACGGC 5 cut(s) 134, 196, 447, 745, 758
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BciT130I CCWGG 1 cut(s) 190
BcoDI GTCTC 6 cut(s) 57, 446, 540, 647, 674, 750
BfaI CTAG 4 cut(s) 15, 255, 738, 786
BglI GCCNNNNNGGC 1 cut(s) 787
BglII AGATCT 2 cut(s) 304, 560
BisI GCNGC 2 cut(s) 147, 357
BlsI GCNGC 2 cut(s) 148, 358
Bme1390I CCNGG 1 cut(s) 190
Bme18I GGWCC 3 cut(s) 192, 297, 798
BmeT110I CYCGRG 2 cut(s) 300, 372
BmgBI CACGTC 1 cut(s) 644
BmgT120I GGNCC 4 cut(s) 192, 297, 789, 798
BmiI GGNNCC 7 cut(s) 103, 187, 267, 299, 413, 456, 780
BmrFI CCNGG 1 cut(s) 190
BmsI GCATC 3 cut(s) 105, 587, 874
Bpu14I TTCGAA 1 cut(s) 846
Bsa29I ATCGAT 2 cut(s) 113, 581
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 4 cut(s) 446, 540, 647, 750
BsaJI CCNNGG 3 cut(s) 436, 657, 774
BsaWI WCCGGW 1 cut(s) 395
Bsc4I CCNNNNNNNGG 4 cut(s) 179, 294, 352, 451
Bse118I RCCGGY 1 cut(s) 71
BseBI CCWGG 1 cut(s) 190
BseCI ATCGAT 2 cut(s) 113, 581
BseDI CCNNGG 3 cut(s) 436, 657, 774
BseGI GGATG 1 cut(s) 667
BseLI CCNNNNNNNGG 4 cut(s) 179, 294, 352, 451
BseRI GAGGAG 1 cut(s) 854
BseXI GCAGC 1 cut(s) 343
BseYI CCCAGC 2 cut(s) 458, 821
Bsh1236I CGCG 1 cut(s) 329
BshFI GGCC 2 cut(s) 243, 790
BshNI GGYRCC 3 cut(s) 101, 185, 411
BshVI ATCGAT 2 cut(s) 113, 581
BsiHKAI GWGCWC 1 cut(s) 98
BsiHKCI CYCGRG 2 cut(s) 300, 372
BsiSI CCGG 2 cut(s) 72, 396
BslI CCNNNNNNNGG 4 cut(s) 179, 294, 352, 451
BsmAI GTCTC 6 cut(s) 57, 446, 540, 647, 674, 750
BsnI GGCC 2 cut(s) 243, 790
Bso31I GGTCTC 4 cut(s) 446, 540, 647, 750
BsoBI CYCGRG 2 cut(s) 300, 372
Bsp119I TTCGAA 1 cut(s) 846
Bsp1286I GDGCHC 3 cut(s) 98, 335, 783
Bsp143I GATC 7 cut(s) 250, 265, 304, 454, 560, 571, 826
BspACI CCGC 6 cut(s) 147, 183, 263, 329, 365, 409
BspANI GGCC 2 cut(s) 243, 790
BspDI ATCGAT 2 cut(s) 113, 581
BspFNI CGCG 1 cut(s) 329
BspLI GGNNCC 7 cut(s) 103, 187, 267, 299, 413, 456, 780
BspPI GGATC 6 cut(s) 245, 260, 273, 449, 462, 834
BspT104I TTCGAA 1 cut(s) 846
BspT107I GGYRCC 3 cut(s) 101, 185, 411
BspTNI GGTCTC 4 cut(s) 446, 540, 647, 750
BsrFI RCCGGY 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 3 cut(s) 436, 657, 774
BssMI GATC 7 cut(s) 250, 265, 304, 454, 560, 571, 826
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 91
Bst2BI CACGAG 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 2 cut(s) 487, 805
Bst6I CTCTTC 1 cut(s) 55
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 846
BstC8I GCNNGC 4 cut(s) 331, 335, 620, 766
BstDEI CTNAG 4 cut(s) 23, 121, 233, 528
BstDSI CCRYGG 1 cut(s) 774
BstEII GGTNACC 1 cut(s) 398
BstF5I GGATG 1 cut(s) 667
BstFNI CGCG 1 cut(s) 329
BstHHI GCGC 2 cut(s) 129, 624
BstKTI GATC 7 cut(s) 253, 268, 307, 457, 563, 574, 829
BstMAI GTCTC 6 cut(s) 57, 446, 540, 647, 674, 750
BstMBI GATC 7 cut(s) 250, 265, 304, 454, 560, 571, 826
BstMWI GCNNNNNNNGC 5 cut(s) 24, 124, 155, 770, 787
BstNI CCWGG 1 cut(s) 190
BstPI GGTNACC 1 cut(s) 398
BstSCI CCNGG 1 cut(s) 188
BstUI CGCG 1 cut(s) 329
BstV1I GCAGC 1 cut(s) 343
BstX2I RGATCY 6 cut(s) 250, 265, 304, 454, 560, 826
BstYI RGATCY 6 cut(s) 250, 265, 304, 454, 560, 826
Bsu15I ATCGAT 2 cut(s) 113, 581
BsuRI GGCC 2 cut(s) 243, 790
BsuTUI ATCGAT 2 cut(s) 113, 581
BtgI CCRYGG 1 cut(s) 774
BtrI CACGTC 1 cut(s) 644
BtsCI GGATG 1 cut(s) 667
Cac8I GCNNGC 4 cut(s) 331, 335, 620, 766
CfoI GCGC 2 cut(s) 129, 624
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 4 cut(s) 192, 297, 789, 798
ClaI ATCGAT 2 cut(s) 113, 581
CseI GACGC 2 cut(s) 335, 439
Csp6I GTAC 2 cut(s) 102, 412
CviAII CATG 1 cut(s) 872
CviQI GTAC 2 cut(s) 102, 412
DdeI CTNAG 4 cut(s) 23, 121, 233, 528
DpnI GATC 7 cut(s) 252, 267, 306, 456, 562, 573, 828
DpnII GATC 7 cut(s) 250, 265, 304, 454, 560, 571, 826
EaeI YGGCCR 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Eco24I GRGCYC 2 cut(s) 335, 783
Eco31I GGTCTC 4 cut(s) 446, 540, 647, 750
Eco47I GGWCC 3 cut(s) 192, 297, 798
Eco88I CYCGRG 2 cut(s) 300, 372
Eco91I GGTNACC 1 cut(s) 398
EcoO65I GGTNACC 1 cut(s) 398
EcoRII CCWGG 1 cut(s) 188
EcoT38I GRGCYC 2 cut(s) 335, 783
FaeI CATG 1 cut(s) 875
FaiI YATR 6 cut(s) 282, 586, 675, 816, 873, 898
FatI CATG 1 cut(s) 871
FauI CCCGC 2 cut(s) 322, 372
Fnu4HI GCNGC 2 cut(s) 147, 357
FokI GGATG 1 cut(s) 674
FriOI GRGCYC 2 cut(s) 335, 783
Fsp4HI GCNGC 2 cut(s) 147, 357
FspBI CTAG 4 cut(s) 15, 255, 738, 786
GlaI GCGC 2 cut(s) 128, 623
GluI GCNGC 2 cut(s) 147, 357
GsaI CCCAGC 2 cut(s) 462, 825
HaeIII GGCC 2 cut(s) 243, 790
HapII CCGG 2 cut(s) 72, 396
HgaI GACGC 2 cut(s) 335, 439
HhaI GCGC 2 cut(s) 129, 624
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 875
Hin6I GCGC 2 cut(s) 127, 622
HinP1I GCGC 2 cut(s) 127, 622
HinfI GANTC 4 cut(s) 222, 237, 478, 734
HpaII CCGG 2 cut(s) 72, 396
HphI GGTGA 3 cut(s) 155, 410, 465
Hpy166II GTNNAC 3 cut(s) 467, 514, 801
Hpy188I TCNGA 6 cut(s) 196, 565, 641, 661, 703, 831
Hpy188III TCNNGA 1 cut(s) 738
Hpy8I GTNNAC 3 cut(s) 467, 514, 801
Hpy99I CGWCG 4 cut(s) 200, 329, 433, 645
HpyAV CCTTC 4 cut(s) 29, 47, 170, 402
HpyCH4III ACNGT 2 cut(s) 487, 805
HpyCH4IV ACGT 3 cut(s) 5, 516, 643
HpyCH4V TGCA 3 cut(s) 359, 548, 768
HpyF10VI GCNNNNNNNGC 5 cut(s) 24, 124, 155, 770, 787
HpyF3I CTNAG 4 cut(s) 23, 121, 233, 528
HpySE526I ACGT 3 cut(s) 5, 516, 643
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 875
HspAI GCGC 2 cut(s) 127, 622
KpnI GGTACC 2 cut(s) 105, 415
Kzo9I GATC 7 cut(s) 250, 265, 304, 454, 560, 571, 826
LmnI GCTCC 2 cut(s) 704, 778
LpnPI CCDG 8 cut(s) 85, 175, 202, 409, 472, 709, 778, 807
Lsp1109I GCAGC 1 cut(s) 343
LweI GCATC 3 cut(s) 105, 587, 874
MaeI CTAG 4 cut(s) 15, 255, 738, 786
MaeII ACGT 3 cut(s) 5, 516, 643
MaeIII GTNAC 2 cut(s) 398, 629
MalI GATC 7 cut(s) 252, 267, 306, 456, 562, 573, 828
MboI GATC 7 cut(s) 250, 265, 304, 454, 560, 571, 826
MboII GAAGA 2 cut(s) 72, 514
MfeI CAATTG 1 cut(s) 549
MflI RGATCY 6 cut(s) 250, 265, 304, 454, 560, 826
MhlI GDGCHC 3 cut(s) 98, 335, 783
MluCI AATT 5 cut(s) 384, 497, 549, 566, 876
MlyI GAGTC 2 cut(s) 231, 728
MmeI TCCRAC 6 cut(s) 33, 108, 165, 219, 664, 726
MslI CAYNNNNRTG 2 cut(s) 183, 870
MspA1I CMGCKG 1 cut(s) 367
MspI CCGG 2 cut(s) 72, 396
MspR9I CCNGG 1 cut(s) 190
MunI CAATTG 1 cut(s) 549
MvaI CCWGG 1 cut(s) 190
MvnI CGCG 1 cut(s) 329
MwoI GCNNNNNNNGC 5 cut(s) 24, 124, 155, 770, 787
NdeII GATC 7 cut(s) 250, 265, 304, 454, 560, 571, 826
NlaIII CATG 1 cut(s) 875
NlaIV GGNNCC 7 cut(s) 103, 187, 267, 299, 413, 456, 780
NmeAIII GCCGAG 2 cut(s) 219, 363
NmuCI GTSAC 1 cut(s) 398
NspV TTCGAA 1 cut(s) 846
OliI CACNNNNGTG 1 cut(s) 183
PfeI GAWTC 2 cut(s) 222, 478
PkrI GCNGC 2 cut(s) 148, 358
PleI GAGTC 2 cut(s) 231, 728
PpsI GAGTC 2 cut(s) 231, 728
Psp6I CCWGG 1 cut(s) 188
PspEI GGTNACC 1 cut(s) 398
PspFI CCCAGC 2 cut(s) 458, 821
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 7 cut(s) 103, 187, 267, 299, 413, 456, 780
PspPI GGNCC 4 cut(s) 192, 297, 789, 798
PsuI RGATCY 6 cut(s) 250, 265, 304, 454, 560, 826
RsaI GTAC 2 cut(s) 103, 413
RsaNI GTAC 2 cut(s) 102, 412
RseI CAYNNNNRTG 2 cut(s) 183, 870
SatI GCNGC 2 cut(s) 147, 357
Sau3AI GATC 7 cut(s) 250, 265, 304, 454, 560, 571, 826
Sau96I GGNCC 4 cut(s) 192, 297, 789, 798
SchI GAGTC 2 cut(s) 231, 728
ScrFI CCNGG 1 cut(s) 190
SduI GDGCHC 3 cut(s) 98, 335, 783
SfaNI GCATC 3 cut(s) 105, 587, 874
SfuI TTCGAA 1 cut(s) 846
SinI GGWCC 3 cut(s) 192, 297, 798
SmiMI CAYNNNNRTG 2 cut(s) 183, 870
Sse9I AATT 5 cut(s) 384, 497, 549, 566, 876
SsiI CCGC 6 cut(s) 147, 183, 263, 329, 365, 409
SspI AATATT 1 cut(s) 835
SspMI CTAG 4 cut(s) 15, 255, 738, 786
StyD4I CCNGG 1 cut(s) 188
TaaI ACNGT 2 cut(s) 487, 805
TaiI ACGT 3 cut(s) 8, 519, 646
TaqI TCGA 5 cut(s) 113, 220, 348, 581, 846
TaqII GACCGA 2 cut(s) 428, 442
TasI AATT 5 cut(s) 384, 497, 549, 566, 876
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 2 cut(s) 222, 478
TseFI GTSAC 1 cut(s) 398
TseI GCWGC 1 cut(s) 356
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 4 cut(s) 678, 831, 888, 900
TspGWI ACGGA 3 cut(s) 148, 310, 735
VpaK11BI GGWCC 3 cut(s) 192, 297, 798
XapI RAATTY 2 cut(s) 384, 566
XbaI TCTAGA 1 cut(s) 737
XspI CTAG 4 cut(s) 15, 255, 738, 786
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.