Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Reverse (-)

46693593 .. 46706844

Gene Structure 13252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG187500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAAATTGCAGATGAAGATGGGCTATAACGGACGTGGACTCGGCAAAAACGAGGAAGGTATTGAAGCCGAATTGAGGTCCAAAAATGAAGGTCTTGGTTTTGATTACAAGGAGGGGACTAAGCTGCGGCGGCGGCGGCCCACATCGTTTGTGAAAGCCAAGGTGGTGCACAAAAGTGTCGCTGCTGGTGACAATGATCACAAGAAGAGCAAAACAGAAATAACCAAAAAACCAAGCAGCCTAGACACTAGTACAGTGGAAGAACACAAGCCCAACGAGCAGCCTAATGAGGCAATTACCAGTGCCGCCGCCGCCACCGGCATGGAGAAGAAGACGACTACCAAAGGTGTCGATTTGCTGGGAAACGTGATGGCTGATATGAGAAGACCTCTTGATGGAATCTTGGCCGACTTTGAGAACTTGAGTTTGAAAGGTACCAGCTCCAGTTACACACTACTCAGTGGAGCTAGCAAAACTTACTTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

162

Amino Acids

17.69

Weight (kDa)

9.52

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	434
AccB1I	GGYRCC	1 cut(s)	434
AciI	CCGC	7 cut(s)	127, 130, 133, 136, 306, 309, 312
AcoI	YGGCCR	1 cut(s)	405
AfaI	GTAC	2 cut(s)	253, 436
AfiI	CCNNNNNNNGG	2 cut(s)	75, 395
AgsI	TTSAA	2 cut(s)	65, 430
AhlI	ACTAGT	1 cut(s)	248
AjiI	CACGTC	1 cut(s)	35
AleI	CACNNNNGTG	1 cut(s)	174
AluBI	AGCT	3 cut(s)	124, 441, 467
AluI	AGCT	3 cut(s)	124, 441, 467
Alw21I	GWGCWC	1 cut(s)	171
Alw44I	GTGCAC	1 cut(s)	167
AoxI	GGCC	2 cut(s)	137, 405
ApaLI	GTGCAC	1 cut(s)	167
ApeKI	GCWGC	4 cut(s)	124, 182, 237, 280
Asp718I	GGTACC	1 cut(s)	434
AspS9I	GGNCC	2 cut(s)	78, 138
AsuHPI	GGTGA	1 cut(s)	200
AsuNHI	GCTAGC	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	171
BanI	GGYRCC	1 cut(s)	434
BbsI	GAAGAC	2 cut(s)	338, 391
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	4 cut(s)	111, 169, 249, 292
BccI	CCATC	3 cut(s)	13, 364, 389
BclI	TGATCA	1 cut(s)	196
BcuI	ACTAGT	1 cut(s)	248
BfaI	CTAG	3 cut(s)	242, 249, 468
Bme18I	GGWCC	1 cut(s)	78
BmgBI	CACGTC	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	78, 138
BmiI	GGNNCC	1 cut(s)	436
BmtI	GCTAGC	1 cut(s)	471
BpiI	GAAGAC	2 cut(s)	338, 391
BplI	GAGNNNNNCTC	2 cut(s)	373, 405
BpmI	CTGGAG	1 cut(s)	427
BpuEI	CTTGAG	1 cut(s)	442
BsaJI	CCNNGG	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 395
Bse118I	RCCGGY	1 cut(s)	317
Bse1I	ACTGG	2 cut(s)	300, 444
BseDI	CCNNGG	1 cut(s)	159
BseLI	CCNNNNNNNGG	2 cut(s)	75, 395
BseMII	CTCAG	1 cut(s)	472
BseNI	ACTGG	2 cut(s)	300, 444
BseSI	GKGCMC	1 cut(s)	171
BseXI	GCAGC	4 cut(s)	111, 169, 249, 292
BseYI	CCCAGC	1 cut(s)	358
BshFI	GGCC	2 cut(s)	139, 407
BshNI	GGYRCC	1 cut(s)	434
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	2 cut(s)	75, 395
BsmFI	GGGAC	1 cut(s)	130
BsnI	GGCC	2 cut(s)	139, 407
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	7 cut(s)	127, 130, 133, 136, 306, 309, 312
BspANI	GGCC	2 cut(s)	139, 407
BspCNI	CTCAG	1 cut(s)	471
BspLI	GGNNCC	1 cut(s)	436
BspOI	GCTAGC	1 cut(s)	471
BspQI	GCTCTTC	1 cut(s)	200
BspT107I	GGYRCC	1 cut(s)	434
BsrFI	RCCGGY	1 cut(s)	317
BsrI	ACTGG	2 cut(s)	300, 444
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	1 cut(s)	196
BssT1I	CCWWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	256
Bst6I	CTCTTC	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	469
BstDEI	CTNAG	2 cut(s)	120, 458
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	5 cut(s)	130, 133, 136, 277, 311
BstSLI	GKGCMC	1 cut(s)	171
BstV1I	GCAGC	4 cut(s)	111, 169, 249, 292
BstV2I	GAAGAC	2 cut(s)	338, 391
BstXI	CCANNNNNNTGG	1 cut(s)	322
BsuRI	GGCC	2 cut(s)	139, 407
BtrI	CACGTC	1 cut(s)	35
BtsIMutI	CAGTG	3 cut(s)	261, 307, 466
Cac8I	GCNNGC	1 cut(s)	469
Cfr10I	RCCGGY	1 cut(s)	317
Cfr13I	GGNCC	2 cut(s)	78, 138
Csp6I	GTAC	2 cut(s)	252, 435
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviAII	CATG	1 cut(s)	322
CviQI	GTAC	2 cut(s)	252, 435
DdeI	CTNAG	2 cut(s)	120, 458
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	405
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco130I	CCWWGG	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	1 cut(s)	325
FaiI	YATR	3 cut(s)	27, 323, 380
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	1 cut(s)	321
FbaI	TGATCA	1 cut(s)	196
FspBI	CTAG	3 cut(s)	242, 249, 468
GsaI	CCCAGC	1 cut(s)	362
GsuI	CTGGAG	1 cut(s)	427
HaeIII	GGCC	2 cut(s)	139, 407
HapII	CCGG	1 cut(s)	318
Hin1II	CATG	1 cut(s)	325
HinfI	GANTC	2 cut(s)	39, 399
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	2 cut(s)	38, 169
Hpy188III	TCNNGA	1 cut(s)	392
Hpy8I	GTNNAC	2 cut(s)	38, 169
HpyAV	CCTTC	2 cut(s)	50, 83
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	2 cut(s)	34, 366
HpyCH4V	TGCA	3 cut(s)	10, 169, 484
HpyF10VI	GCNNNNNNNGC	5 cut(s)	130, 133, 136, 277, 311
HpyF3I	CTNAG	2 cut(s)	120, 458
HpySE526I	ACGT	2 cut(s)	34, 366
Hsp92II	CATG	1 cut(s)	325
KpnI	GGTACC	1 cut(s)	438
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	196
LguI	GCTCTTC	1 cut(s)	200
LmnI	GCTCC	2 cut(s)	446, 464
LpnPI	CCDG	6 cut(s)	171, 313, 331, 344, 451, 457
Lsp1109I	GCAGC	4 cut(s)	111, 169, 249, 292
MaeI	CTAG	3 cut(s)	242, 249, 468
MaeII	ACGT	2 cut(s)	34, 366
MaeIII	GTNAC	2 cut(s)	188, 446
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	6 cut(s)	28, 217, 272, 340, 343, 396
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	3 cut(s)	5, 71, 294
MlyI	GAGTC	1 cut(s)	33
MnlI	CCTC	5 cut(s)	46, 69, 106, 283, 399
MslI	CAYNNNNRTG	2 cut(s)	174, 320
MspI	CCGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	5 cut(s)	130, 133, 136, 277, 311
NdeII	GATC	1 cut(s)	196
NheI	GCTAGC	1 cut(s)	467
NlaIII	CATG	1 cut(s)	325
NlaIV	GGNNCC	1 cut(s)	436
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	188
OliI	CACNNNNGTG	1 cut(s)	174
PciSI	GCTCTTC	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	399
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
PspFI	CCCAGC	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	436
PspPI	GGNCC	2 cut(s)	78, 138
RsaI	GTAC	2 cut(s)	253, 436
RsaNI	GTAC	2 cut(s)	252, 435
RseI	CAYNNNNRTG	2 cut(s)	174, 320
SapI	GCTCTTC	1 cut(s)	200
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	2 cut(s)	78, 138
SchI	GAGTC	1 cut(s)	33
SduI	GDGCHC	1 cut(s)	171
SinI	GGWCC	1 cut(s)	78
SmiMI	CAYNNNNRTG	2 cut(s)	174, 320
SmlI	CTYRAG	1 cut(s)	421
SmoI	CTYRAG	1 cut(s)	421
SpeI	ACTAGT	1 cut(s)	248
Sse9I	AATT	3 cut(s)	5, 71, 294
SsiI	CCGC	7 cut(s)	127, 130, 133, 136, 306, 309, 312
SspMI	CTAG	3 cut(s)	242, 249, 468
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	2 cut(s)	37, 369
TaqI	TCGA	1 cut(s)	351
TasI	AATT	3 cut(s)	5, 71, 294
TatI	WGTACW	1 cut(s)	251
TauI	GCSGC	7 cut(s)	130, 133, 136, 139, 308, 311, 314
TfiI	GAWTC	1 cut(s)	399
TscAI	CASTG	3 cut(s)	261, 307, 466
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	4 cut(s)	124, 182, 237, 280
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	3 cut(s)	17, 29, 102
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	3 cut(s)	261, 307, 466
VneI	GTGCAC	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	78
XspI	CTAG	3 cut(s)	242, 249, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.