Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Forward (+)

36365406 .. 36368808

Gene Structure 3403 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G015900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGATTTGAGATCTGAAATCGAGAGGCTCTGCAGATCTGAATCTGGTCTGAGATCGATGGATTTGAGATCTGAAATCGATCGCCTTTCTCGCAAGCGCAAGGAGGACAATCTCCGACGCGTCGTTGAGACCTCGGAAGGAAATCTCCGCATCTTCGCTCTCGCTTCCTCCTCCTCCGACCACGACGTCGACGAAGGAGACAACGGCGGCTCCAGAAAACGCATGAGGCGAGACCGCGGCTGCAACGCCGTCGTTTCATCCACCAAGCTCGCCGCGGAGCCCACCAGGCCCGTCAGATCCGCCGTGAAACCCTATGACGACGGTGGGGATCTGAATAAACACACGAGGGGCATCGGCATGAAATTGCAGATGAAGATGGGCTATAACGGACGTGGACTCGGCAAAAACGAGGAAGGTGCTTTGATATCTATCTTTAACCTAAAAGAGCAAGAGATTTTGAAGAAGTATCGAAATGAAAATTTTGCACCAAAGAAGCTTGTTTACAAGGAAAGAAGAGCAATCGGAAAATGCCCATTAACTCCAGATCGAGGTGATATTGTCGGTCTTATTTTACGCGCAATGGAATTTAACAATTCTACCAGGATGTACCTAGCTGCTGGTGAACTATTTGGTGGGGAAAGATTCATGAAACCATTCCGTGCTTTGTTCCCTCACCTTGAGAACCACTGTTCTGTGGAACACACAGATGAACACCCAGGGATTAATAGGCTAAACTTTGCCAACAATCTCCTTGGACATGGACACCGCCTCTATTATGGTTTCCGGACCACAATTAGACCTGATAGAAAAGCCCTTGCTACAATCTTCATTGATCGCGAGAAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

282

Amino Acids

32.12

Weight (kDa)

9.75

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	115 - 141	1.4e-06	G-patch domain
O-FucT	PF10250	147 - 237	3.2e-13	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
AatII	GACGTC	1 cut(s)	189
AccI	GTMKAC	1 cut(s)	189
AccII	CGCG	5 cut(s)	120, 237, 275, 576, 837
AccIII	TCCGGA	1 cut(s)	783
AciI	CCGC	8 cut(s)	148, 207, 235, 237, 273, 275, 300, 766
AclWI	GGATC	2 cut(s)	291, 336
AcsI	RAATTY	2 cut(s)	478, 584
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	1 cut(s)	608
AfiI	CCNNNNNNNGG	1 cut(s)	548
AflIII	ACRYGT	1 cut(s)	118
AgsI	TTSAA	1 cut(s)	460
AjiI	CACGTC	1 cut(s)	392
AjnI	CCWGG	3 cut(s)	284, 599, 715
AluBI	AGCT	3 cut(s)	268, 496, 614
AluI	AGCT	3 cut(s)	268, 496, 614
Alw26I	GTCTC	3 cut(s)	122, 192, 225
AlwI	GGATC	2 cut(s)	291, 336
Aor13HI	TCCGGA	1 cut(s)	783
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	2 cut(s)	240, 614
ApoI	RAATTY	2 cut(s)	478, 584
AseI	ATTAAT	1 cut(s)	723
Asp700I	GAANNNNTTC	1 cut(s)	653
AspLEI	GCGC	2 cut(s)	99, 578
AspS9I	GGNCC	2 cut(s)	288, 786
AsuHPI	GGTGA	3 cut(s)	563, 632, 665
AvaII	GGWCC	1 cut(s)	786
BanII	GRGCYC	1 cut(s)	282
BarI	GAAGNNNNNNTAC	2 cut(s)	485, 517
BauI	CACGAG	1 cut(s)	343
BbvI	GCAGC	2 cut(s)	227, 601
BccI	CCATC	2 cut(s)	52, 370
BceAI	ACGGC	3 cut(s)	220, 233, 287
BcgI	CGANNNNNNTGC	4 cut(s)	232, 266, 398, 432
BciT130I	CCWGG	3 cut(s)	286, 601, 717
BcoDI	GTCTC	3 cut(s)	122, 192, 225
BfaI	CTAG	1 cut(s)	611
BfmI	CTRYAG	1 cut(s)	31
BglI	GCCNNNNNGGC	1 cut(s)	286
BglII	AGATCT	3 cut(s)	11, 35, 68
BisI	GCNGC	5 cut(s)	208, 238, 241, 273, 615
BlsI	GCNGC	5 cut(s)	209, 239, 242, 274, 616
Bme1390I	CCNGG	3 cut(s)	286, 601, 717
Bme18I	GGWCC	1 cut(s)	786
BmgBI	CACGTC	1 cut(s)	392
BmgT120I	GGNCC	2 cut(s)	288, 786
BmiI	GGNNCC	2 cut(s)	211, 279
BmrFI	CCNGG	3 cut(s)	286, 601, 717
BmsI	GCATC	2 cut(s)	159, 360
BpmI	CTGGAG	2 cut(s)	196, 525
BpuEI	CTTGAG	1 cut(s)	698
Bsa29I	ATCGAT	2 cut(s)	56, 78
BsaBI	GATNNNNATC	2 cut(s)	40, 428
BsaHI	GRCGYC	1 cut(s)	186
BsaI	GGTCTC	2 cut(s)	122, 225
BsaJI	CCNNGG	6 cut(s)	132, 235, 273, 715, 716, 751
BsaWI	WCCGGW	1 cut(s)	783
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	1 cut(s)	548
Bse3DI	GCAATG	1 cut(s)	585
Bse8I	GATNNNNATC	2 cut(s)	40, 428
BseAI	TCCGGA	1 cut(s)	783
BseBI	CCWGG	3 cut(s)	286, 601, 717
BseCI	ATCGAT	2 cut(s)	56, 78
BseDI	CCNNGG	6 cut(s)	132, 235, 273, 715, 716, 751
BseGI	GGATG	2 cut(s)	257, 609
BseJI	GATNNNNATC	2 cut(s)	40, 428
BseLI	CCNNNNNNNGG	1 cut(s)	548
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	1 cut(s)	41
BseRI	GAGGAG	2 cut(s)	160, 163
BseXI	GCAGC	2 cut(s)	227, 601
Bsh1236I	CGCG	5 cut(s)	120, 237, 275, 576, 837
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	289
BshVI	ATCGAT	2 cut(s)	56, 78
BsiEI	CGRYCG	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	784
BslI	CCNNNNNNNGG	1 cut(s)	548
BsmAI	GTCTC	3 cut(s)	122, 192, 225
BsnI	GGCC	1 cut(s)	289
Bso31I	GGTCTC	2 cut(s)	122, 225
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp13I	TCCGGA	1 cut(s)	783
Bsp143I	GATC	9 cut(s)	11, 35, 53, 68, 79, 296, 328, 544, 832
Bsp68I	TCGCGA	1 cut(s)	837
BspACI	CCGC	8 cut(s)	148, 207, 235, 237, 273, 275, 300, 766
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	1 cut(s)	42
BspDI	ATCGAT	2 cut(s)	56, 78
BspEI	TCCGGA	1 cut(s)	783
BspFNI	CGCG	5 cut(s)	120, 237, 275, 576, 837
BspHI	TCATGA	1 cut(s)	645
BspLI	GGNNCC	2 cut(s)	211, 279
BspMAI	CTGCAG	1 cut(s)	35
BspPI	GGATC	2 cut(s)	291, 336
BspQI	GCTCTTC	1 cut(s)	508
BspTNI	GGTCTC	2 cut(s)	122, 225
BsrDI	GCAATG	1 cut(s)	585
BssECI	CCNNGG	6 cut(s)	132, 235, 273, 715, 716, 751
BssMI	GATC	9 cut(s)	11, 35, 53, 68, 79, 296, 328, 544, 832
BssNI	GRCGYC	1 cut(s)	186
BssSI	CACGAG	1 cut(s)	343
BssT1I	CCWWGG	1 cut(s)	751
Bst2BI	CACGAG	1 cut(s)	343
Bst2UI	CCWGG	3 cut(s)	286, 601, 717
Bst4CI	ACNGT	2 cut(s)	323, 689
Bst6I	CTCTTC	1 cut(s)	508
BstACI	GRCGYC	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	95, 270
BstDEI	CTNAG	1 cut(s)	50
BstDSI	CCRYGG	2 cut(s)	235, 273
BstF5I	GGATG	2 cut(s)	257, 609
BstFNI	CGCG	5 cut(s)	120, 237, 275, 576, 837
BstHHI	GCGC	2 cut(s)	99, 578
BstKTI	GATC	9 cut(s)	14, 38, 56, 71, 82, 299, 331, 547, 835
BstMAI	GTCTC	3 cut(s)	122, 192, 225
BstMBI	GATC	9 cut(s)	11, 35, 53, 68, 79, 296, 328, 544, 832
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 286
BstNI	CCWGG	3 cut(s)	286, 601, 717
BstSCI	CCNGG	3 cut(s)	284, 599, 715
BstSFI	CTRYAG	1 cut(s)	31
BstUI	CGCG	5 cut(s)	120, 237, 275, 576, 837
BstV1I	GCAGC	2 cut(s)	227, 601
BstX2I	RGATCY	5 cut(s)	11, 35, 68, 296, 328
BstYI	RGATCY	5 cut(s)	11, 35, 68, 296, 328
Bsu15I	ATCGAT	2 cut(s)	56, 78
BsuRI	GGCC	1 cut(s)	289
BsuTUI	ATCGAT	2 cut(s)	56, 78
BtgI	CCRYGG	2 cut(s)	235, 273
BtrI	CACGTC	1 cut(s)	392
BtsCI	GGATG	2 cut(s)	257, 609
BtsIMutI	CAGTG	1 cut(s)	685
BtuMI	TCGCGA	1 cut(s)	837
Cac8I	GCNNGC	2 cut(s)	95, 270
CciI	TCATGA	1 cut(s)	645
CfoI	GCGC	2 cut(s)	99, 578
Cfr13I	GGNCC	2 cut(s)	288, 786
Cfr42I	CCGCGG	2 cut(s)	238, 276
ClaI	ATCGAT	2 cut(s)	56, 78
CseI	GACGC	2 cut(s)	109, 126
Csp6I	GTAC	1 cut(s)	607
CviAII	CATG	4 cut(s)	223, 358, 646, 758
CviQI	GTAC	1 cut(s)	607
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	9 cut(s)	13, 37, 55, 70, 81, 298, 330, 546, 834
DpnII	GATC	9 cut(s)	11, 35, 53, 68, 79, 296, 328, 544, 832
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	508
EarI	CTCTTC	1 cut(s)	508
EciI	GGCGGA	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	751
Eco24I	GRGCYC	1 cut(s)	282
Eco31I	GGTCTC	2 cut(s)	122, 225
Eco32I	GATATC	1 cut(s)	426
Eco47I	GGWCC	1 cut(s)	786
EcoRII	CCWGG	3 cut(s)	284, 599, 715
EcoRV	GATATC	1 cut(s)	426
EcoT14I	CCWWGG	1 cut(s)	751
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	751
FaeI	CATG	4 cut(s)	226, 361, 649, 761
FaiI	YATR	7 cut(s)	224, 315, 359, 384, 647, 759, 777
FatI	CATG	4 cut(s)	222, 357, 645, 757
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	5 cut(s)	208, 238, 241, 273, 615
FokI	GGATG	2 cut(s)	244, 616
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	5 cut(s)	208, 238, 241, 273, 615
FspBI	CTAG	1 cut(s)	611
GlaI	GCGC	2 cut(s)	98, 577
GluI	GCNGC	5 cut(s)	208, 238, 241, 273, 615
GsuI	CTGGAG	2 cut(s)	196, 525
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	1 cut(s)	784
HgaI	GACGC	2 cut(s)	109, 126
HhaI	GCGC	2 cut(s)	99, 578
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	4 cut(s)	226, 361, 649, 761
Hin6I	GCGC	2 cut(s)	97, 576
HinP1I	GCGC	2 cut(s)	97, 576
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	3 cut(s)	41, 396, 642
HpaII	CCGG	1 cut(s)	784
HphI	GGTGA	3 cut(s)	563, 632, 665
Hpy166II	GTNNAC	4 cut(s)	190, 395, 502, 623
Hpy188III	TCNNGA	6 cut(s)	22, 213, 542, 646, 784, 836
Hpy8I	GTNNAC	4 cut(s)	190, 395, 502, 623
Hpy99I	CGWCG	7 cut(s)	120, 125, 188, 191, 194, 254, 323
HpyAV	CCTTC	3 cut(s)	131, 188, 407
HpyCH4III	ACNGT	2 cut(s)	323, 689
HpyCH4IV	ACGT	2 cut(s)	186, 391
HpyCH4V	TGCA	4 cut(s)	33, 243, 367, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 286
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	2 cut(s)	186, 391
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	4 cut(s)	226, 361, 649, 761
HspAI	GCGC	2 cut(s)	97, 576
Kpn2I	TCCGGA	1 cut(s)	783
KspI	CCGCGG	2 cut(s)	238, 276
Kzo9I	GATC	9 cut(s)	11, 35, 53, 68, 79, 296, 328, 544, 832
LguI	GCTCTTC	1 cut(s)	508
LmnI	GCTCC	2 cut(s)	215, 277
Lsp1109I	GCAGC	2 cut(s)	227, 601
LweI	GCATC	2 cut(s)	159, 360
MaeI	CTAG	1 cut(s)	611
MaeII	ACGT	2 cut(s)	186, 391
MalI	GATC	9 cut(s)	13, 37, 55, 70, 81, 298, 330, 546, 834
MboI	GATC	9 cut(s)	11, 35, 53, 68, 79, 296, 328, 544, 832
MboII	GAAGA	5 cut(s)	145, 385, 472, 525, 817
MflI	RGATCY	5 cut(s)	11, 35, 68, 296, 328
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	5 cut(s)	362, 478, 584, 592, 792
MluI	ACGCGT	1 cut(s)	118
MlyI	GAGTC	1 cut(s)	390
MmeI	TCCRAC	2 cut(s)	139, 201
MroI	TCCGGA	1 cut(s)	783
MroXI	GAANNNNTTC	1 cut(s)	653
MseI	TTAA	4 cut(s)	435, 536, 588, 723
MslI	CAYNNNNRTG	2 cut(s)	356, 705
MspA1I	CMGCKG	2 cut(s)	237, 275
MspI	CCGG	1 cut(s)	784
MspR9I	CCNGG	3 cut(s)	286, 601, 717
MvaI	CCWGG	3 cut(s)	286, 601, 717
MvnI	CGCG	5 cut(s)	120, 237, 275, 576, 837
MwoI	GCNNNNNNNGC	2 cut(s)	90, 286
NdeII	GATC	9 cut(s)	11, 35, 53, 68, 79, 296, 328, 544, 832
NlaIII	CATG	4 cut(s)	226, 361, 649, 761
NlaIV	GGNNCC	2 cut(s)	211, 279
NmeAIII	GCCGAG	1 cut(s)	378
NruI	TCGCGA	1 cut(s)	837
PagI	TCATGA	1 cut(s)	645
PasI	CCCWGGG	1 cut(s)	716
PciSI	GCTCTTC	1 cut(s)	508
PcsI	WCGNNNNNNNCGW	3 cut(s)	189, 226, 405
PdmI	GAANNNNTTC	1 cut(s)	653
PfeI	GAWTC	2 cut(s)	41, 642
PkrI	GCNGC	5 cut(s)	209, 239, 242, 274, 616
Ple19I	CGATCG	1 cut(s)	82
PleI	GAGTC	1 cut(s)	390
PpsI	GAGTC	1 cut(s)	390
PshBI	ATTAAT	1 cut(s)	723
Psp6I	CCWGG	3 cut(s)	284, 599, 715
PspGI	CCWGG	3 cut(s)	284, 599, 715
PspN4I	GGNNCC	2 cut(s)	211, 279
PspPI	GGNCC	2 cut(s)	288, 786
PstI	CTGCAG	1 cut(s)	35
PsuI	RGATCY	5 cut(s)	11, 35, 68, 296, 328
PvuI	CGATCG	1 cut(s)	82
RruI	TCGCGA	1 cut(s)	837
RsaI	GTAC	1 cut(s)	608
RsaNI	GTAC	1 cut(s)	607
RseI	CAYNNNNRTG	2 cut(s)	356, 705
SacII	CCGCGG	2 cut(s)	238, 276
SalI	GTCGAC	1 cut(s)	188
SapI	GCTCTTC	1 cut(s)	508
SaqAI	TTAA	4 cut(s)	435, 536, 588, 723
SatI	GCNGC	5 cut(s)	208, 238, 241, 273, 615
Sau3AI	GATC	9 cut(s)	11, 35, 53, 68, 79, 296, 328, 544, 832
Sau96I	GGNCC	2 cut(s)	288, 786
SchI	GAGTC	1 cut(s)	390
ScrFI	CCNGG	3 cut(s)	286, 601, 717
SduI	GDGCHC	1 cut(s)	282
SfaNI	GCATC	2 cut(s)	159, 360
SfcI	CTRYAG	1 cut(s)	31
Sfr303I	CCGCGG	2 cut(s)	238, 276
SgrBI	CCGCGG	2 cut(s)	238, 276
SgrDI	CGTCGACG	1 cut(s)	188
SinI	GGWCC	1 cut(s)	786
SmiMI	CAYNNNNRTG	2 cut(s)	356, 705
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse9I	AATT	5 cut(s)	362, 478, 584, 592, 792
SsiI	CCGC	8 cut(s)	148, 207, 235, 237, 273, 275, 300, 766
SspMI	CTAG	1 cut(s)	611
StyD4I	CCNGG	3 cut(s)	284, 599, 715
StyI	CCWWGG	1 cut(s)	751
TaaI	ACNGT	2 cut(s)	323, 689
TaiI	ACGT	2 cut(s)	189, 394
TaqI	TCGA	6 cut(s)	21, 56, 78, 189, 469, 547
TaqII	GACCGA	1 cut(s)	551
TasI	AATT	5 cut(s)	362, 478, 584, 592, 792
TauI	GCSGC	3 cut(s)	210, 240, 275
TfiI	GAWTC	2 cut(s)	41, 642
Tru1I	TTAA	4 cut(s)	435, 536, 588, 723
Tru9I	TTAA	4 cut(s)	435, 536, 588, 723
TscAI	CASTG	1 cut(s)	692
TseI	GCWGC	2 cut(s)	240, 614
TspDTI	ATGAA	8 cut(s)	246, 374, 386, 489, 634, 662, 723, 817
TspGWI	ACGGA	2 cut(s)	402, 647
TspRI	CASTG	1 cut(s)	692
VpaK11BI	GGWCC	1 cut(s)	786
VspI	ATTAAT	1 cut(s)	723
XapI	RAATTY	2 cut(s)	478, 584
XmiI	GTMKAC	1 cut(s)	189
XmnI	GAANNNNTTC	1 cut(s)	653
XspI	CTAG	1 cut(s)	611
ZraI	GACGTC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.