Rw4G016010

tuftelin-interacting protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
36797265 .. 36799240
1976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G016010.1

Sequence Viewer

Length: 834 bp
ATGGATTTGAGATCTGAAATCGAGAGGCTCTGCAGATCTGAATCTGGTCTGAGATCGATGGATTTGAGATCTGAAATCGATCGCCTTTCTCGCAAGCGCAAGGAGGACAATCTCCGACGCGTCGTTGAGACCTCCGAAGGAAATCTCCGCATCTTCGCTCTCGCTTCCTCCTCCGACCACGACGTCGACGACGGAGACAACGGCGGCTCCAGAAAACGCATGAGGCGACACCGCGGCTGCAACGCCGTCGTTTCATCCACCAAGCTCGCCGCGGAGCCCACCAGGCCCGTCAGATCCGCCGTGAAACCCTATGACGACGGTGGGGATCTGCATAAACACACGAGGGGCATCGGCATGAAATTGCAGATGAAGATGGGCTATAACGGACGTGGACTCGGCAAAAACGAGGAAGGTATTGAAGCCGAATTGAGGTCCAAAAATGAAGGTCTTGGTTTTGATTACAAGCAGGGGACTAAGCTGCGGCGGCGGCCCACATCGTTTGTGAAAGCAAAGGTGGTGCACAAAAGTGTCGCTGCTGGTGACAATGATCACAAGAAGAGCAAAACAGAAATAACCACAAAACCAAGCAGCCTAGACACTAGTACAGTGGAAGAACACAAGCCCAACGAGCAGCCTAATGAGGCAATTACCAGTGCCGCCGCCACCGGCATGGAGAAGAAGACGACTACCAAAGGTGTCGATTTTCTGGGAAAGGTGATGGCTGATATGAGAAGACCTCTTGATGGAATCTTGGCCGACTTTGAGAACTTGAGTTTGAAAGGAGTTTTGACAATGAAATTTGAACCAGTTTATGCAGCATTGGAGACCTTATGA

Protein Analysis

277

Amino Acids

30.76

Weight (kDa)

9.51

Isoelectric Point (pI)

59.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 114 - 151 5.8e-07 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 182
AatII GACGTC 1 cut(s) 186
AccI GTMKAC 1 cut(s) 186
AccII CGCG 3 cut(s) 120, 234, 272
AclWI GGATC 2 cut(s) 288, 333
AcoI YGGCCR 1 cut(s) 753
AcsI RAATTY 1 cut(s) 797
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 1 cut(s) 604
AfiI CCNNNNNNNGG 2 cut(s) 429, 743
AflIII ACRYGT 1 cut(s) 118
AgsI TTSAA 3 cut(s) 419, 778, 803
AhlI ACTAGT 1 cut(s) 599
AjiI CACGTC 1 cut(s) 389
AjnI CCWGG 1 cut(s) 281
AleI CACNNNNGTG 1 cut(s) 525
AluBI AGCT 2 cut(s) 265, 478
AluI AGCT 2 cut(s) 265, 478
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 3 cut(s) 122, 189, 818
Alw44I GTGCAC 1 cut(s) 518
AlwI GGATC 2 cut(s) 288, 333
AoxI GGCC 3 cut(s) 284, 488, 753
ApaLI GTGCAC 1 cut(s) 518
ApeKI GCWGC 6 cut(s) 237, 478, 533, 588, 631, 815
ApoI RAATTY 1 cut(s) 797
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 3 cut(s) 285, 432, 489
AsuHPI GGTGA 2 cut(s) 551, 727
AvaII GGWCC 1 cut(s) 432
BaeGI GKGCMC 1 cut(s) 522
BanII GRGCYC 1 cut(s) 279
BauI CACGAG 1 cut(s) 340
BbsI GAAGAC 2 cut(s) 686, 739
Bbv12I GWGCWC 1 cut(s) 522
BbvI GCAGC 6 cut(s) 224, 465, 520, 600, 643, 827
BccI CCATC 4 cut(s) 52, 367, 712, 737
BceAI ACGGC 3 cut(s) 217, 230, 284
BcgI CGANNNNNNTGC 2 cut(s) 229, 263
BciT130I CCWGG 1 cut(s) 283
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 3 cut(s) 122, 189, 818
BcuI ACTAGT 1 cut(s) 599
BfaI CTAG 2 cut(s) 593, 600
BfmI CTRYAG 1 cut(s) 31
BglI GCCNNNNNGGC 1 cut(s) 283
BglII AGATCT 3 cut(s) 11, 35, 68
Bme1390I CCNGG 1 cut(s) 283
Bme18I GGWCC 1 cut(s) 432
BmgBI CACGTC 1 cut(s) 389
BmgT120I GGNCC 3 cut(s) 285, 432, 489
BmiI GGNNCC 2 cut(s) 208, 276
BmrFI CCNGG 1 cut(s) 283
BmsI GCATC 2 cut(s) 159, 357
BpiI GAAGAC 2 cut(s) 686, 739
BplI GAGNNNNNCTC 2 cut(s) 721, 753
BpmI CTGGAG 1 cut(s) 193
BpuEI CTTGAG 1 cut(s) 790
Bsa29I ATCGAT 2 cut(s) 56, 78
BsaBI GATNNNNATC 1 cut(s) 40
BsaHI GRCGYC 1 cut(s) 183
BsaI GGTCTC 2 cut(s) 122, 818
BsaJI CCNNGG 2 cut(s) 232, 270
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 2 cut(s) 429, 743
Bse118I RCCGGY 1 cut(s) 665
Bse1I ACTGG 2 cut(s) 651, 806
Bse8I GATNNNNATC 1 cut(s) 40
BseBI CCWGG 1 cut(s) 283
BseCI ATCGAT 2 cut(s) 56, 78
BseDI CCNNGG 2 cut(s) 232, 270
BseGI GGATG 1 cut(s) 254
BseJI GATNNNNATC 1 cut(s) 40
BseLI CCNNNNNNNGG 2 cut(s) 429, 743
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 2 cut(s) 651, 806
BseRI GAGGAG 1 cut(s) 160
BseSI GKGCMC 1 cut(s) 522
BseXI GCAGC 6 cut(s) 224, 465, 520, 600, 643, 827
Bsh1236I CGCG 3 cut(s) 120, 234, 272
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 3 cut(s) 286, 490, 755
BshVI ATCGAT 2 cut(s) 56, 78
BsiEI CGRYCG 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 522
BsiSI CCGG 1 cut(s) 666
BslFI GGGAC 1 cut(s) 484
BslI CCNNNNNNNGG 2 cut(s) 429, 743
BsmAI GTCTC 3 cut(s) 122, 189, 818
BsmFI GGGAC 1 cut(s) 484
BsnI GGCC 3 cut(s) 286, 490, 755
Bso31I GGTCTC 2 cut(s) 122, 818
Bsp1286I GDGCHC 2 cut(s) 279, 522
Bsp143I GATC 8 cut(s) 11, 35, 53, 68, 79, 293, 325, 547
BspANI GGCC 3 cut(s) 286, 490, 755
BspCNI CTCAG 1 cut(s) 42
BspDI ATCGAT 2 cut(s) 56, 78
BspFNI CGCG 3 cut(s) 120, 234, 272
BspLI GGNNCC 2 cut(s) 208, 276
BspMAI CTGCAG 1 cut(s) 35
BspPI GGATC 2 cut(s) 288, 333
BspQI GCTCTTC 1 cut(s) 551
BspTNI GGTCTC 2 cut(s) 122, 818
BsrFI RCCGGY 1 cut(s) 665
BsrI ACTGG 2 cut(s) 651, 806
BssAI RCCGGY 1 cut(s) 665
BssECI CCNNGG 2 cut(s) 232, 270
BssMI GATC 8 cut(s) 11, 35, 53, 68, 79, 293, 325, 547
BssNI GRCGYC 1 cut(s) 183
BssSI CACGAG 1 cut(s) 340
Bst2BI CACGAG 1 cut(s) 340
Bst2UI CCWGG 1 cut(s) 283
Bst4CI ACNGT 2 cut(s) 320, 607
Bst6I CTCTTC 1 cut(s) 551
BstACI GRCGYC 1 cut(s) 183
BstC8I GCNNGC 2 cut(s) 95, 267
BstDEI CTNAG 2 cut(s) 50, 474
BstDSI CCRYGG 2 cut(s) 232, 270
BstF5I GGATG 1 cut(s) 254
BstFNI CGCG 3 cut(s) 120, 234, 272
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 8 cut(s) 14, 38, 56, 71, 82, 296, 328, 550
BstMAI GTCTC 3 cut(s) 122, 189, 818
BstMBI GATC 8 cut(s) 11, 35, 53, 68, 79, 293, 325, 547
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 5 cut(s) 90, 283, 484, 487, 628
BstNI CCWGG 1 cut(s) 283
BstSCI CCNGG 1 cut(s) 281
BstSFI CTRYAG 1 cut(s) 31
BstSLI GKGCMC 1 cut(s) 522
BstUI CGCG 3 cut(s) 120, 234, 272
BstV1I GCAGC 6 cut(s) 224, 465, 520, 600, 643, 827
BstV2I GAAGAC 2 cut(s) 686, 739
BstX2I RGATCY 5 cut(s) 11, 35, 68, 293, 325
BstXI CCANNNNNNTGG 1 cut(s) 670
BstYI RGATCY 5 cut(s) 11, 35, 68, 293, 325
Bsu15I ATCGAT 2 cut(s) 56, 78
BsuRI GGCC 3 cut(s) 286, 490, 755
BsuTUI ATCGAT 2 cut(s) 56, 78
BtgI CCRYGG 2 cut(s) 232, 270
BtrI CACGTC 1 cut(s) 389
BtsCI GGATG 1 cut(s) 254
BtsIMutI CAGTG 2 cut(s) 612, 658
Cac8I GCNNGC 2 cut(s) 95, 267
CfoI GCGC 1 cut(s) 99
Cfr10I RCCGGY 1 cut(s) 665
Cfr13I GGNCC 3 cut(s) 285, 432, 489
Cfr42I CCGCGG 2 cut(s) 235, 273
ClaI ATCGAT 2 cut(s) 56, 78
CseI GACGC 2 cut(s) 109, 126
Csp6I GTAC 1 cut(s) 603
CspCI CAANNNNNGTGG 2 cut(s) 481, 516
CviAII CATG 3 cut(s) 220, 355, 670
CviQI GTAC 1 cut(s) 603
DdeI CTNAG 2 cut(s) 50, 474
DpnI GATC 8 cut(s) 13, 37, 55, 70, 81, 295, 327, 549
DpnII GATC 8 cut(s) 11, 35, 53, 68, 79, 293, 325, 547
DrdI GACNNNNNNGTC 1 cut(s) 182
DseDI GACNNNNNNGTC 1 cut(s) 182
EaeI YGGCCR 1 cut(s) 753
Eam1104I CTCTTC 1 cut(s) 551
EarI CTCTTC 1 cut(s) 551
EciI GGCGGA 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 279
Eco31I GGTCTC 2 cut(s) 122, 818
Eco47I GGWCC 1 cut(s) 432
EcoRII CCWGG 1 cut(s) 281
EcoT38I GRGCYC 1 cut(s) 279
FaeI CATG 3 cut(s) 223, 358, 673
FaiI YATR 9 cut(s) 221, 312, 333, 356, 381, 671, 728, 813, 832
FaqI GGGAC 1 cut(s) 484
FatI CATG 3 cut(s) 219, 354, 669
FbaI TGATCA 1 cut(s) 547
FblI GTMKAC 1 cut(s) 186
FokI GGATG 1 cut(s) 241
FriOI GRGCYC 1 cut(s) 279
FspBI CTAG 2 cut(s) 593, 600
GlaI GCGC 1 cut(s) 98
GsuI CTGGAG 1 cut(s) 193
HaeIII GGCC 3 cut(s) 286, 490, 755
HapII CCGG 1 cut(s) 666
HgaI GACGC 2 cut(s) 109, 126
HhaI GCGC 1 cut(s) 99
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 3 cut(s) 223, 358, 673
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 3 cut(s) 41, 393, 747
HpaII CCGG 1 cut(s) 666
HphI GGTGA 2 cut(s) 551, 727
Hpy166II GTNNAC 3 cut(s) 187, 392, 520
Hpy188I TCNGA 8 cut(s) 16, 40, 51, 73, 116, 136, 175, 293
Hpy188III TCNNGA 3 cut(s) 22, 210, 740
Hpy8I GTNNAC 3 cut(s) 187, 392, 520
Hpy99I CGWCG 8 cut(s) 120, 125, 185, 188, 191, 194, 251, 320
HpyAV CCTTC 3 cut(s) 131, 404, 437
HpyCH4III ACNGT 2 cut(s) 320, 607
HpyCH4IV ACGT 2 cut(s) 183, 388
HpyCH4V TGCA 6 cut(s) 33, 240, 331, 364, 520, 815
HpyF10VI GCNNNNNNNGC 5 cut(s) 90, 283, 484, 487, 628
HpyF3I CTNAG 2 cut(s) 50, 474
HpySE526I ACGT 2 cut(s) 183, 388
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 3 cut(s) 223, 358, 673
HspAI GCGC 1 cut(s) 97
Ksp22I TGATCA 1 cut(s) 547
KspI CCGCGG 2 cut(s) 235, 273
Kzo9I GATC 8 cut(s) 11, 35, 53, 68, 79, 293, 325, 547
LguI GCTCTTC 1 cut(s) 551
LmnI GCTCC 2 cut(s) 212, 274
Lsp1109I GCAGC 6 cut(s) 224, 465, 520, 600, 643, 827
LweI GCATC 2 cut(s) 159, 357
MaeI CTAG 2 cut(s) 593, 600
MaeII ACGT 2 cut(s) 183, 388
MaeIII GTNAC 1 cut(s) 539
MalI GATC 8 cut(s) 13, 37, 55, 70, 81, 295, 327, 549
MboI GATC 8 cut(s) 11, 35, 53, 68, 79, 293, 325, 547
MboII GAAGA 7 cut(s) 145, 382, 568, 623, 688, 691, 744
MflI RGATCY 5 cut(s) 11, 35, 68, 293, 325
MhlI GDGCHC 2 cut(s) 279, 522
MluCI AATT 4 cut(s) 359, 425, 645, 797
MluI ACGCGT 1 cut(s) 118
MlyI GAGTC 1 cut(s) 387
MmeI TCCRAC 2 cut(s) 139, 198
MslI CAYNNNNRTG 3 cut(s) 353, 525, 668
MspA1I CMGCKG 2 cut(s) 234, 272
MspI CCGG 1 cut(s) 666
MspR9I CCNGG 1 cut(s) 283
MvaI CCWGG 1 cut(s) 283
MvnI CGCG 3 cut(s) 120, 234, 272
MwoI GCNNNNNNNGC 5 cut(s) 90, 283, 484, 487, 628
NdeII GATC 8 cut(s) 11, 35, 53, 68, 79, 293, 325, 547
NlaIII CATG 3 cut(s) 223, 358, 673
NlaIV GGNNCC 2 cut(s) 208, 276
NmeAIII GCCGAG 1 cut(s) 375
NmuCI GTSAC 1 cut(s) 539
OliI CACNNNNGTG 1 cut(s) 525
PciSI GCTCTTC 1 cut(s) 551
PcsI WCGNNNNNNNCGW 3 cut(s) 186, 223, 402
PfeI GAWTC 2 cut(s) 41, 747
Ple19I CGATCG 1 cut(s) 82
PleI GAGTC 1 cut(s) 387
PpsI GAGTC 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
PspN4I GGNNCC 2 cut(s) 208, 276
PspPI GGNCC 3 cut(s) 285, 432, 489
PstI CTGCAG 1 cut(s) 35
PsuI RGATCY 5 cut(s) 11, 35, 68, 293, 325
PvuI CGATCG 1 cut(s) 82
RsaI GTAC 1 cut(s) 604
RsaNI GTAC 1 cut(s) 603
RseI CAYNNNNRTG 3 cut(s) 353, 525, 668
SacII CCGCGG 2 cut(s) 235, 273
SalI GTCGAC 1 cut(s) 185
SapI GCTCTTC 1 cut(s) 551
Sau3AI GATC 8 cut(s) 11, 35, 53, 68, 79, 293, 325, 547
Sau96I GGNCC 3 cut(s) 285, 432, 489
SchI GAGTC 1 cut(s) 387
ScrFI CCNGG 1 cut(s) 283
SduI GDGCHC 2 cut(s) 279, 522
SfaNI GCATC 2 cut(s) 159, 357
SfcI CTRYAG 1 cut(s) 31
Sfr303I CCGCGG 2 cut(s) 235, 273
SgrBI CCGCGG 2 cut(s) 235, 273
SgrDI CGTCGACG 1 cut(s) 185
SinI GGWCC 1 cut(s) 432
SmiMI CAYNNNNRTG 3 cut(s) 353, 525, 668
SmlI CTYRAG 1 cut(s) 769
SmoI CTYRAG 1 cut(s) 769
SpeI ACTAGT 1 cut(s) 599
Sse9I AATT 4 cut(s) 359, 425, 645, 797
SspMI CTAG 2 cut(s) 593, 600
StyD4I CCNGG 1 cut(s) 281
TaaI ACNGT 2 cut(s) 320, 607
TaiI ACGT 2 cut(s) 186, 391
TaqI TCGA 5 cut(s) 21, 56, 78, 186, 699
TasI AATT 4 cut(s) 359, 425, 645, 797
TatI WGTACW 1 cut(s) 602
TauI GCSGC 8 cut(s) 207, 237, 272, 484, 487, 490, 659, 662
TfiI GAWTC 2 cut(s) 41, 747
TscAI CASTG 2 cut(s) 612, 658
TseFI GTSAC 1 cut(s) 539
TseI GCWGC 6 cut(s) 237, 478, 533, 588, 631, 815
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 5 cut(s) 243, 371, 383, 456, 809
TspGWI ACGGA 2 cut(s) 207, 399
TspRI CASTG 2 cut(s) 612, 658
VneI GTGCAC 1 cut(s) 518
VpaK11BI GGWCC 1 cut(s) 432
XapI RAATTY 1 cut(s) 797
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 2 cut(s) 593, 600
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.