Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Forward (+)

26087469 .. 26088231

Gene Structure 763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008135

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGATTTGAGATCTGAAATCGATCGCCTTTCTCGCAAGCGCAAGGAGAACAATCTCCGACGCGTCGTTGAGACCTCGGAAGGAAATCTCCGCATCTTCGTTCTCGCTTTCTCCTCCTCCGACCACGACGTCGACGAAGGAGACAACGGCGGCTCTAGAAAACGCATGAGGCGAGACCGCGGCTGCAACGCCGTCGTTTCATCCACCAAGCTCGCCGCGGAGCCCACCAGGCCCGTCAGATCCGCTGTGAAACCCTATGACGACGGTGGGGATCTGAATATTGGGGAGTTCGAGAAACACACGAGGGGCATCGGCATGAAATTGCAGATGAAGATGGGCTGTAACGGACGTGGACTCGGCAAAAACGAGGAAGGTCTTGGTTTTGATTACAAGCAGGGGACTATGCTGCGGCGGCGGCCCACATCGTTTGTGAAAGCCAAGGTGGTGGTGCACAAAAGTGTCGCTGCTGGTGACAATGATCACAAGAAGAGCAAAACAGAAATAACCAAAAAACCAAGCAGCCTAGATACTAGTGCAGTGGAAGAACACAAGCCCAACGAGCAGCCTAATGAGGCAATTACCAGTGCCGCCGGGATGGGGAAGAAGACGAGTACAAAAGGTGTCGATGTGCTGGAAAAGGTGATGGCTGATGTGAGAAGACCTCTTGATGGAATCTTGGCCGACTTTGAGAATTTGAGTCTGAAAGGTACCAGCTCCAGGTGCATCTTAGCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

246

Amino Acids

26.96

Weight (kDa)

9.61

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AatII	GACGTC	1 cut(s)	132
Acc65I	GGTACC	1 cut(s)	707
AccB1I	GGYRCC	1 cut(s)	707
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	3 cut(s)	63, 180, 218
AclWI	GGATC	2 cut(s)	234, 279
AcoI	YGGCCR	1 cut(s)	678
AcsI	RAATTY	1 cut(s)	691
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	2 cut(s)	613, 709
AfiI	CCNNNNNNNGG	3 cut(s)	597, 668, 717
AflIII	ACRYGT	1 cut(s)	61
AhlI	ACTAGT	1 cut(s)	530
AjiI	CACGTC	1 cut(s)	350
AjnI	CCWGG	2 cut(s)	227, 716
AleI	CACNNNNGTG	1 cut(s)	456
AluBI	AGCT	3 cut(s)	211, 714, 731
AluI	AGCT	3 cut(s)	211, 714, 731
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	3 cut(s)	65, 135, 168
Alw44I	GTGCAC	1 cut(s)	449
AlwI	GGATC	2 cut(s)	234, 279
AoxI	GGCC	3 cut(s)	230, 416, 678
ApaLI	GTGCAC	1 cut(s)	449
ApeKI	GCWGC	5 cut(s)	183, 406, 464, 519, 562
ApoI	RAATTY	1 cut(s)	691
Asp718I	GGTACC	1 cut(s)	707
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	231, 417
AsuC2I	CCSGG	1 cut(s)	592
AsuHPI	GGTGA	2 cut(s)	482, 652
BaeGI	GKGCMC	1 cut(s)	453
BanI	GGYRCC	1 cut(s)	707
BanII	GRGCYC	1 cut(s)	225
BauI	CACGAG	1 cut(s)	301
BbsI	GAAGAC	2 cut(s)	611, 664
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	5 cut(s)	170, 393, 451, 531, 574
BccI	CCATC	4 cut(s)	328, 589, 637, 662
BceAI	ACGGC	2 cut(s)	163, 176
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	2 cut(s)	229, 718
BclI	TGATCA	1 cut(s)	478
BcnI	CCSGG	1 cut(s)	592
BcoDI	GTCTC	3 cut(s)	65, 135, 168
BcuI	ACTAGT	1 cut(s)	530
BfaI	CTAG	3 cut(s)	156, 524, 531
BglI	GCCNNNNNGGC	1 cut(s)	229
BglII	AGATCT	1 cut(s)	11
Bme1390I	CCNGG	3 cut(s)	229, 592, 718
BmgBI	CACGTC	1 cut(s)	350
BmgT120I	GGNCC	2 cut(s)	231, 417
BmiI	GGNNCC	2 cut(s)	222, 709
BmrFI	CCNGG	3 cut(s)	229, 592, 718
BmsI	GCATC	3 cut(s)	102, 318, 732
BpiI	GAAGAC	2 cut(s)	611, 664
BplI	GAGNNNNNCTC	2 cut(s)	646, 678
BpmI	CTGGAG	1 cut(s)	700
BpuMI	CCSGG	1 cut(s)	592
Bsa29I	ATCGAT	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	129
BsaI	GGTCTC	2 cut(s)	65, 168
BsaJI	CCNNGG	4 cut(s)	75, 178, 216, 438
Bsc4I	CCNNNNNNNGG	3 cut(s)	597, 668, 717
Bse1I	ACTGG	1 cut(s)	582
BseBI	CCWGG	2 cut(s)	229, 718
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	4 cut(s)	75, 178, 216, 438
BseGI	GGATG	2 cut(s)	200, 600
BseLI	CCNNNNNNNGG	3 cut(s)	597, 668, 717
BseNI	ACTGG	1 cut(s)	582
BseRI	GAGGAG	2 cut(s)	103, 106
BseSI	GKGCMC	1 cut(s)	453
BseXI	GCAGC	5 cut(s)	170, 393, 451, 531, 574
BsgI	GTGCAG	1 cut(s)	555
Bsh1236I	CGCG	3 cut(s)	63, 180, 218
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	3 cut(s)	232, 418, 680
BshNI	GGYRCC	1 cut(s)	707
BshVI	ATCGAT	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	453
BsiSI	CCGG	1 cut(s)	591
BslFI	GGGAC	1 cut(s)	412
BslI	CCNNNNNNNGG	3 cut(s)	597, 668, 717
BsmAI	GTCTC	3 cut(s)	65, 135, 168
BsmFI	GGGAC	1 cut(s)	412
BsnI	GGCC	3 cut(s)	232, 418, 680
Bso31I	GGTCTC	2 cut(s)	65, 168
Bsp1286I	GDGCHC	2 cut(s)	225, 453
Bsp143I	GATC	5 cut(s)	11, 22, 239, 271, 478
BspANI	GGCC	3 cut(s)	232, 418, 680
BspDI	ATCGAT	1 cut(s)	21
BspFNI	CGCG	3 cut(s)	63, 180, 218
BspLI	GGNNCC	2 cut(s)	222, 709
BspPI	GGATC	2 cut(s)	234, 279
BspQI	GCTCTTC	1 cut(s)	482
BspT107I	GGYRCC	1 cut(s)	707
BspTNI	GGTCTC	2 cut(s)	65, 168
BsrI	ACTGG	1 cut(s)	582
BssECI	CCNNGG	4 cut(s)	75, 178, 216, 438
BssMI	GATC	5 cut(s)	11, 22, 239, 271, 478
BssNI	GRCGYC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	301
BssT1I	CCWWGG	1 cut(s)	438
Bst2BI	CACGAG	1 cut(s)	301
Bst2UI	CCWGG	2 cut(s)	229, 718
Bst4CI	ACNGT	1 cut(s)	266
Bst6I	CTCTTC	1 cut(s)	482
BstACI	GRCGYC	1 cut(s)	129
BstC8I	GCNNGC	2 cut(s)	38, 213
BstDEI	CTNAG	1 cut(s)	727
BstDSI	CCRYGG	2 cut(s)	178, 216
BstF5I	GGATG	2 cut(s)	200, 600
BstFNI	CGCG	3 cut(s)	63, 180, 218
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	5 cut(s)	14, 25, 242, 274, 481
BstMAI	GTCTC	3 cut(s)	65, 135, 168
BstMBI	GATC	5 cut(s)	11, 22, 239, 271, 478
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	6 cut(s)	33, 229, 412, 415, 559, 720
BstNI	CCWGG	2 cut(s)	229, 718
BstSCI	CCNGG	3 cut(s)	227, 590, 716
BstSLI	GKGCMC	1 cut(s)	453
BstUI	CGCG	3 cut(s)	63, 180, 218
BstV1I	GCAGC	5 cut(s)	170, 393, 451, 531, 574
BstV2I	GAAGAC	2 cut(s)	611, 664
BstX2I	RGATCY	3 cut(s)	11, 239, 271
BstXI	CCANNNNNNTGG	1 cut(s)	445
BstYI	RGATCY	3 cut(s)	11, 239, 271
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	3 cut(s)	232, 418, 680
BsuTUI	ATCGAT	1 cut(s)	21
BtgI	CCRYGG	2 cut(s)	178, 216
BtrI	CACGTC	1 cut(s)	350
BtsCI	GGATG	2 cut(s)	200, 600
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	2 cut(s)	543, 589
Cac8I	GCNNGC	2 cut(s)	38, 213
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	2 cut(s)	231, 417
Cfr42I	CCGCGG	2 cut(s)	181, 219
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	2 cut(s)	52, 69
Csp6I	GTAC	2 cut(s)	612, 708
CspCI	CAANNNNNGTGG	2 cut(s)	409, 444
CviAII	CATG	2 cut(s)	166, 316
CviQI	GTAC	2 cut(s)	612, 708
DdeI	CTNAG	1 cut(s)	727
DpnI	GATC	5 cut(s)	13, 24, 241, 273, 480
DpnII	GATC	5 cut(s)	11, 22, 239, 271, 478
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	678
Eam1104I	CTCTTC	1 cut(s)	482
EarI	CTCTTC	1 cut(s)	482
Eco130I	CCWWGG	1 cut(s)	438
Eco24I	GRGCYC	1 cut(s)	225
Eco31I	GGTCTC	2 cut(s)	65, 168
EcoRII	CCWGG	2 cut(s)	227, 716
EcoT14I	CCWWGG	1 cut(s)	438
EcoT38I	GRGCYC	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	438
FaeI	CATG	2 cut(s)	169, 319
FaiI	YATR	5 cut(s)	167, 258, 317, 404, 734
FaqI	GGGAC	1 cut(s)	412
FatI	CATG	2 cut(s)	165, 315
FbaI	TGATCA	1 cut(s)	478
FblI	GTMKAC	1 cut(s)	132
FokI	GGATG	2 cut(s)	187, 607
FriOI	GRGCYC	1 cut(s)	225
FspBI	CTAG	3 cut(s)	156, 524, 531
GlaI	GCGC	1 cut(s)	41
GsuI	CTGGAG	1 cut(s)	700
HaeIII	GGCC	3 cut(s)	232, 418, 680
HapII	CCGG	1 cut(s)	591
HgaI	GACGC	2 cut(s)	52, 69
HhaI	GCGC	1 cut(s)	42
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	169, 319
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	3 cut(s)	354, 672, 697
HpaII	CCGG	1 cut(s)	591
HphI	GGTGA	2 cut(s)	482, 652
Hpy166II	GTNNAC	3 cut(s)	133, 353, 451
Hpy188I	TCNGA	7 cut(s)	16, 59, 79, 121, 239, 276, 702
Hpy188III	TCNNGA	3 cut(s)	156, 292, 665
Hpy8I	GTNNAC	3 cut(s)	133, 353, 451
Hpy99I	CGWCG	7 cut(s)	63, 68, 131, 134, 137, 197, 266
HpyAV	CCTTC	3 cut(s)	74, 131, 365
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	2 cut(s)	129, 349
HpyCH4V	TGCA	5 cut(s)	186, 325, 451, 536, 723
HpyF10VI	GCNNNNNNNGC	6 cut(s)	33, 229, 412, 415, 559, 720
HpyF3I	CTNAG	1 cut(s)	727
HpySE526I	ACGT	2 cut(s)	129, 349
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	169, 319
HspAI	GCGC	1 cut(s)	40
KpnI	GGTACC	1 cut(s)	711
Ksp22I	TGATCA	1 cut(s)	478
KspI	CCGCGG	2 cut(s)	181, 219
Kzo9I	GATC	5 cut(s)	11, 22, 239, 271, 478
LguI	GCTCTTC	1 cut(s)	482
LmnI	GCTCC	2 cut(s)	220, 719
Lsp1109I	GCAGC	5 cut(s)	170, 393, 451, 531, 574
LweI	GCATC	3 cut(s)	102, 318, 732
MaeI	CTAG	3 cut(s)	156, 524, 531
MaeII	ACGT	2 cut(s)	129, 349
MaeIII	GTNAC	2 cut(s)	341, 470
MalI	GATC	5 cut(s)	13, 24, 241, 273, 480
MboI	GATC	5 cut(s)	11, 22, 239, 271, 478
MboII	GAAGA	7 cut(s)	88, 343, 499, 554, 613, 616, 669
MflI	RGATCY	3 cut(s)	11, 239, 271
MhlI	GDGCHC	2 cut(s)	225, 453
MluCI	AATT	3 cut(s)	320, 576, 691
MluI	ACGCGT	1 cut(s)	61
MlyI	GAGTC	2 cut(s)	348, 706
MmeI	TCCRAC	2 cut(s)	82, 144
MnlI	CCTC	8 cut(s)	85, 124, 127, 162, 297, 361, 565, 672
MslI	CAYNNNNRTG	2 cut(s)	314, 456
MspA1I	CMGCKG	3 cut(s)	180, 218, 245
MspI	CCGG	1 cut(s)	591
MspR9I	CCNGG	3 cut(s)	229, 592, 718
MvaI	CCWGG	2 cut(s)	229, 718
MvnI	CGCG	3 cut(s)	63, 180, 218
MwoI	GCNNNNNNNGC	6 cut(s)	33, 229, 412, 415, 559, 720
NciI	CCSGG	1 cut(s)	592
NdeII	GATC	5 cut(s)	11, 22, 239, 271, 478
NlaIII	CATG	2 cut(s)	169, 319
NlaIV	GGNNCC	2 cut(s)	222, 709
NmeAIII	GCCGAG	1 cut(s)	336
NmuCI	GTSAC	1 cut(s)	470
OliI	CACNNNNGTG	1 cut(s)	456
PciSI	GCTCTTC	1 cut(s)	482
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 169, 363
PfeI	GAWTC	1 cut(s)	672
Ple19I	CGATCG	1 cut(s)	25
PleI	GAGTC	2 cut(s)	348, 705
PpsI	GAGTC	2 cut(s)	348, 705
Psp6I	CCWGG	2 cut(s)	227, 716
PspGI	CCWGG	2 cut(s)	227, 716
PspN4I	GGNNCC	2 cut(s)	222, 709
PspPI	GGNCC	2 cut(s)	231, 417
PsuI	RGATCY	3 cut(s)	11, 239, 271
PvuI	CGATCG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	613, 709
RsaNI	GTAC	2 cut(s)	612, 708
RseI	CAYNNNNRTG	2 cut(s)	314, 456
SacII	CCGCGG	2 cut(s)	181, 219
SalI	GTCGAC	1 cut(s)	131
SapI	GCTCTTC	1 cut(s)	482
Sau3AI	GATC	5 cut(s)	11, 22, 239, 271, 478
Sau96I	GGNCC	2 cut(s)	231, 417
SchI	GAGTC	2 cut(s)	348, 706
ScrFI	CCNGG	3 cut(s)	229, 592, 718
SduI	GDGCHC	2 cut(s)	225, 453
SfaNI	GCATC	3 cut(s)	102, 318, 732
Sfr303I	CCGCGG	2 cut(s)	181, 219
SgrBI	CCGCGG	2 cut(s)	181, 219
SgrDI	CGTCGACG	1 cut(s)	131
SmiMI	CAYNNNNRTG	2 cut(s)	314, 456
SpeI	ACTAGT	1 cut(s)	530
Sse9I	AATT	3 cut(s)	320, 576, 691
SspI	AATATT	1 cut(s)	280
SspMI	CTAG	3 cut(s)	156, 524, 531
StyD4I	CCNGG	3 cut(s)	227, 590, 716
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	2 cut(s)	132, 352
TaqI	TCGA	4 cut(s)	21, 132, 291, 624
TasI	AATT	3 cut(s)	320, 576, 691
TatI	WGTACW	1 cut(s)	611
TauI	GCSGC	7 cut(s)	153, 183, 218, 412, 415, 418, 590
TfiI	GAWTC	1 cut(s)	672
TscAI	CASTG	2 cut(s)	543, 589
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	5 cut(s)	183, 406, 464, 519, 562
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	3 cut(s)	189, 332, 344
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	2 cut(s)	543, 589
VneI	GTGCAC	1 cut(s)	449
XapI	RAATTY	1 cut(s)	691
XbaI	TCTAGA	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	3 cut(s)	156, 524, 531
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.