Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Reverse (-)

26276488 .. 26277285

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008149

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGATTTGAGGTCTGAAATCGATCGCCTTTCTCGCAAGCGCAAGGAGAACAATCTCCGACGCGTCGTTGAGACCTCGGAAGGAAATCTCCGCATCTTCGCTCTCGCTTCCTCCTCATCCGACCACGACGTCGACGAAAACGGAGACAACGGCGGCTCCAGAAAACGCATGAGGAGAGACCGCGGCTGCAACGCCGTCGTTTCATCCACCAAGCTCGCCGCAGAGCCCACCAGGCCAGTCAGATCCGCCGTGAAACCCTATGACGACGGTGGGGATCTGAATATTGGGGAGTTCGAGAAACACACAAAGGGCATCGGCATGAAATCGCTGATGAAGATGGGATATAACGGACGTGGACTCGGCAAAAACGAGGAAGGTACTGTGAGCCCAATTGAAGCCGAATTGAGGCCCAAAAATGAAGGTCTTGGTTTTGATTACAAGGAGGGGACTAGGCTGCGGCGGCGGCCCACATCGTTTGTGAAAGCCAAGGTGGTGCACAAAAGTGTCGCTGCTGGTAACAATGATCACAAGAAGAGCAAAACAGAAATAACCAAAAAACCAAGCAGCCCAAACAATAGTACAGTGGAAGAACACAAGCCCCACAAGCAGCCGCGGCGGCCTAATGAGGCAATTACCAGTGCCGCCGCCACCGGGAGGGAGAAGAAGACGACTACCAAAGGTGTCGATTTGCTGGGAAAGGTGATGGCTGATATGAGAAGACCTCTTGATGGAATCTTGGCCGACTTTGAGAATTTGAGTTTGATAGACAACAGCTCCAGGTGCATCTTAGCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

266

Amino Acids

29.3

Weight (kDa)

9.85

Isoelectric Point (pI)

55.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	102 - 143	1.4e-12	G-patch domain
G-patch_2	PF12656	106 - 146	3e-06	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AatII	GACGTC	1 cut(s)	132
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	3 cut(s)	63, 183, 613
AclWI	GGATC	2 cut(s)	237, 282
AcoI	YGGCCR	1 cut(s)	738
AcsI	RAATTY	1 cut(s)	751
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	2 cut(s)	379, 580
AfiI	CCNNNNNNNGG	4 cut(s)	405, 651, 654, 728
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	1 cut(s)	395
AjiI	CACGTC	1 cut(s)	353
AjnI	CCWGG	2 cut(s)	230, 776
AleI	CACNNNNGTG	1 cut(s)	501
AluBI	AGCT	3 cut(s)	214, 774, 791
AluI	AGCT	3 cut(s)	214, 774, 791
Alw21I	GWGCWC	1 cut(s)	498
Alw26I	GTCTC	3 cut(s)	65, 138, 171
Alw44I	GTGCAC	1 cut(s)	494
AlwI	GGATC	2 cut(s)	237, 282
AoxI	GGCC	5 cut(s)	233, 407, 464, 617, 738
ApaLI	GTGCAC	1 cut(s)	494
ApeKI	GCWGC	5 cut(s)	186, 454, 509, 564, 607
ApoI	RAATTY	1 cut(s)	751
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	408, 465
AsuC2I	CCSGG	1 cut(s)	652
AsuHPI	GGTGA	1 cut(s)	712
BaeGI	GKGCMC	1 cut(s)	498
BanII	GRGCYC	2 cut(s)	228, 389
BbsI	GAAGAC	2 cut(s)	671, 724
Bbv12I	GWGCWC	1 cut(s)	498
BbvI	GCAGC	5 cut(s)	173, 441, 496, 576, 619
BccI	CCATC	3 cut(s)	331, 697, 722
BceAI	ACGGC	3 cut(s)	166, 179, 233
BcgI	CGANNNNNNTGC	2 cut(s)	178, 212
BciT130I	CCWGG	2 cut(s)	232, 778
BclI	TGATCA	1 cut(s)	523
BcnI	CCSGG	1 cut(s)	652
BcoDI	GTCTC	3 cut(s)	65, 138, 171
BfaI	CTAG	1 cut(s)	450
BglI	GCCNNNNNGGC	2 cut(s)	232, 616
Bme1390I	CCNGG	3 cut(s)	232, 652, 778
BmgBI	CACGTC	1 cut(s)	353
BmgT120I	GGNCC	2 cut(s)	408, 465
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	3 cut(s)	232, 652, 778
BmsI	GCATC	3 cut(s)	102, 321, 792
BpiI	GAAGAC	2 cut(s)	671, 724
BplI	GAGNNNNNCTC	2 cut(s)	706, 738
BpmI	CTGGAG	2 cut(s)	142, 760
BpuMI	CCSGG	1 cut(s)	652
Bsa29I	ATCGAT	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	129
BsaI	GGTCTC	2 cut(s)	65, 171
BsaJI	CCNNGG	4 cut(s)	75, 181, 486, 611
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 758, 788
Bsc4I	CCNNNNNNNGG	4 cut(s)	405, 651, 654, 728
Bse1I	ACTGG	2 cut(s)	236, 636
BseBI	CCWGG	2 cut(s)	232, 778
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	4 cut(s)	75, 181, 486, 611
BseGI	GGATG	2 cut(s)	116, 203
BseLI	CCNNNNNNNGG	4 cut(s)	405, 651, 654, 728
BseNI	ACTGG	2 cut(s)	236, 636
BseRI	GAGGAG	2 cut(s)	103, 187
BseSI	GKGCMC	1 cut(s)	498
BseXI	GCAGC	5 cut(s)	173, 441, 496, 576, 619
BseYI	CCCAGC	1 cut(s)	691
Bsh1236I	CGCG	3 cut(s)	63, 183, 613
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	5 cut(s)	235, 409, 466, 619, 740
BshVI	ATCGAT	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	498
BsiSI	CCGG	1 cut(s)	651
BslFI	GGGAC	1 cut(s)	460
BslI	CCNNNNNNNGG	4 cut(s)	405, 651, 654, 728
BsmAI	GTCTC	3 cut(s)	65, 138, 171
BsmFI	GGGAC	1 cut(s)	460
BsnI	GGCC	5 cut(s)	235, 409, 466, 619, 740
Bso31I	GGTCTC	2 cut(s)	65, 171
Bsp1286I	GDGCHC	3 cut(s)	228, 389, 498
Bsp143I	GATC	4 cut(s)	22, 242, 274, 523
BspANI	GGCC	5 cut(s)	235, 409, 466, 619, 740
BspDI	ATCGAT	1 cut(s)	21
BspFNI	CGCG	3 cut(s)	63, 183, 613
BspLI	GGNNCC	1 cut(s)	157
BspPI	GGATC	2 cut(s)	237, 282
BspQI	GCTCTTC	1 cut(s)	527
BspTNI	GGTCTC	2 cut(s)	65, 171
BsrI	ACTGG	2 cut(s)	236, 636
BssECI	CCNNGG	4 cut(s)	75, 181, 486, 611
BssMI	GATC	4 cut(s)	22, 242, 274, 523
BssNI	GRCGYC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	486
Bst2UI	CCWGG	2 cut(s)	232, 778
Bst4CI	ACNGT	3 cut(s)	269, 382, 583
Bst6I	CTCTTC	1 cut(s)	527
BstACI	GRCGYC	1 cut(s)	129
BstC8I	GCNNGC	2 cut(s)	38, 216
BstDEI	CTNAG	1 cut(s)	787
BstDSI	CCRYGG	2 cut(s)	181, 611
BstF5I	GGATG	2 cut(s)	116, 203
BstFNI	CGCG	3 cut(s)	63, 183, 613
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	4 cut(s)	25, 245, 277, 526
BstMAI	GTCTC	3 cut(s)	65, 138, 171
BstMBI	GATC	4 cut(s)	22, 242, 274, 523
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	8 cut(s)	33, 232, 460, 463, 604, 613, 616, 780
BstNI	CCWGG	2 cut(s)	232, 778
BstSCI	CCNGG	3 cut(s)	230, 650, 776
BstSLI	GKGCMC	1 cut(s)	498
BstUI	CGCG	3 cut(s)	63, 183, 613
BstV1I	GCAGC	5 cut(s)	173, 441, 496, 576, 619
BstV2I	GAAGAC	2 cut(s)	671, 724
BstX2I	RGATCY	2 cut(s)	242, 274
BstYI	RGATCY	2 cut(s)	242, 274
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	5 cut(s)	235, 409, 466, 619, 740
BsuTUI	ATCGAT	1 cut(s)	21
BtgI	CCRYGG	2 cut(s)	181, 611
BtrI	CACGTC	1 cut(s)	353
BtsCI	GGATG	2 cut(s)	116, 203
BtsIMutI	CAGTG	2 cut(s)	588, 643
Cac8I	GCNNGC	2 cut(s)	38, 216
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	2 cut(s)	408, 465
Cfr42I	CCGCGG	2 cut(s)	184, 614
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	2 cut(s)	52, 69
Csp6I	GTAC	2 cut(s)	378, 579
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	2 cut(s)	169, 319
CviQI	GTAC	2 cut(s)	378, 579
DdeI	CTNAG	1 cut(s)	787
DpnI	GATC	4 cut(s)	24, 244, 276, 525
DpnII	GATC	4 cut(s)	22, 242, 274, 523
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	738
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
EciI	GGCGGA	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	486
Eco24I	GRGCYC	2 cut(s)	228, 389
Eco31I	GGTCTC	2 cut(s)	65, 171
EcoRII	CCWGG	2 cut(s)	230, 776
EcoT14I	CCWWGG	1 cut(s)	486
EcoT38I	GRGCYC	2 cut(s)	228, 389
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	2 cut(s)	172, 322
FaiI	YATR	6 cut(s)	170, 261, 320, 345, 713, 794
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	2 cut(s)	168, 318
FbaI	TGATCA	1 cut(s)	523
FblI	GTMKAC	1 cut(s)	132
FokI	GGATG	2 cut(s)	103, 190
FriOI	GRGCYC	2 cut(s)	228, 389
FspBI	CTAG	1 cut(s)	450
GlaI	GCGC	1 cut(s)	41
GsaI	CCCAGC	1 cut(s)	695
GsuI	CTGGAG	2 cut(s)	142, 760
HaeIII	GGCC	5 cut(s)	235, 409, 466, 619, 740
HapII	CCGG	1 cut(s)	651
HgaI	GACGC	2 cut(s)	52, 69
HhaI	GCGC	1 cut(s)	42
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	172, 322
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	2 cut(s)	357, 732
HpaII	CCGG	1 cut(s)	651
HphI	GGTGA	1 cut(s)	712
Hpy166II	GTNNAC	3 cut(s)	133, 356, 496
Hpy188I	TCNGA	6 cut(s)	16, 59, 79, 121, 242, 279
Hpy188III	TCNNGA	3 cut(s)	159, 295, 725
Hpy8I	GTNNAC	3 cut(s)	133, 356, 496
Hpy99I	CGWCG	7 cut(s)	63, 68, 131, 134, 137, 200, 269
HpyAV	CCTTC	3 cut(s)	74, 368, 413
HpyCH4III	ACNGT	3 cut(s)	269, 382, 583
HpyCH4IV	ACGT	2 cut(s)	129, 352
HpyCH4V	TGCA	3 cut(s)	189, 496, 783
HpyF10VI	GCNNNNNNNGC	8 cut(s)	33, 232, 460, 463, 604, 613, 616, 780
HpyF3I	CTNAG	1 cut(s)	787
HpySE526I	ACGT	2 cut(s)	129, 352
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	172, 322
HspAI	GCGC	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	523
KspI	CCGCGG	2 cut(s)	184, 614
Kzo9I	GATC	4 cut(s)	22, 242, 274, 523
LguI	GCTCTTC	1 cut(s)	527
LmnI	GCTCC	2 cut(s)	161, 779
Lsp1109I	GCAGC	5 cut(s)	173, 441, 496, 576, 619
LweI	GCATC	3 cut(s)	102, 321, 792
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	2 cut(s)	129, 352
MaeIII	GTNAC	1 cut(s)	515
MalI	GATC	4 cut(s)	24, 244, 276, 525
MboI	GATC	4 cut(s)	22, 242, 274, 523
MboII	GAAGA	7 cut(s)	88, 346, 544, 599, 673, 676, 729
MfeI	CAATTG	1 cut(s)	390
MflI	RGATCY	2 cut(s)	242, 274
MhlI	GDGCHC	3 cut(s)	228, 389, 498
MluCI	AATT	4 cut(s)	390, 401, 630, 751
MluI	ACGCGT	1 cut(s)	61
MlyI	GAGTC	1 cut(s)	351
MmeI	TCCRAC	2 cut(s)	82, 144
MslI	CAYNNNNRTG	2 cut(s)	317, 501
MspA1I	CMGCKG	2 cut(s)	183, 613
MspI	CCGG	1 cut(s)	651
MspR9I	CCNGG	3 cut(s)	232, 652, 778
MunI	CAATTG	1 cut(s)	390
MvaI	CCWGG	2 cut(s)	232, 778
MvnI	CGCG	3 cut(s)	63, 183, 613
MwoI	GCNNNNNNNGC	8 cut(s)	33, 232, 460, 463, 604, 613, 616, 780
NciI	CCSGG	1 cut(s)	652
NdeII	GATC	4 cut(s)	22, 242, 274, 523
NlaIII	CATG	2 cut(s)	172, 322
NlaIV	GGNNCC	1 cut(s)	157
NmeAIII	GCCGAG	1 cut(s)	339
OliI	CACNNNNGTG	1 cut(s)	501
PciSI	GCTCTTC	1 cut(s)	527
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 366
PfeI	GAWTC	1 cut(s)	732
Ple19I	CGATCG	1 cut(s)	25
PleI	GAGTC	1 cut(s)	351
PpsI	GAGTC	1 cut(s)	351
Psp6I	CCWGG	2 cut(s)	230, 776
PspFI	CCCAGC	1 cut(s)	691
PspGI	CCWGG	2 cut(s)	230, 776
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	2 cut(s)	408, 465
PsuI	RGATCY	2 cut(s)	242, 274
PvuI	CGATCG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	379, 580
RsaNI	GTAC	2 cut(s)	378, 579
RseI	CAYNNNNRTG	2 cut(s)	317, 501
SacII	CCGCGG	2 cut(s)	184, 614
SalI	GTCGAC	1 cut(s)	131
SapI	GCTCTTC	1 cut(s)	527
Sau3AI	GATC	4 cut(s)	22, 242, 274, 523
Sau96I	GGNCC	2 cut(s)	408, 465
SchI	GAGTC	1 cut(s)	351
ScrFI	CCNGG	3 cut(s)	232, 652, 778
SduI	GDGCHC	3 cut(s)	228, 389, 498
SfaNI	GCATC	3 cut(s)	102, 321, 792
Sfr303I	CCGCGG	2 cut(s)	184, 614
SgrBI	CCGCGG	2 cut(s)	184, 614
SgrDI	CGTCGACG	1 cut(s)	131
SmiMI	CAYNNNNRTG	2 cut(s)	317, 501
Sse9I	AATT	4 cut(s)	390, 401, 630, 751
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	3 cut(s)	230, 650, 776
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	3 cut(s)	269, 382, 583
TaiI	ACGT	2 cut(s)	132, 355
TaqI	TCGA	4 cut(s)	21, 132, 294, 684
TasI	AATT	4 cut(s)	390, 401, 630, 751
TatI	WGTACW	1 cut(s)	578
TfiI	GAWTC	1 cut(s)	732
TscAI	CASTG	2 cut(s)	588, 643
TseI	GCWGC	5 cut(s)	186, 454, 509, 564, 607
TspDTI	ATGAA	4 cut(s)	192, 335, 347, 432
TspGWI	ACGGA	2 cut(s)	156, 363
TspRI	CASTG	2 cut(s)	588, 643
VneI	GTGCAC	1 cut(s)	494
XapI	RAATTY	1 cut(s)	751
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	1 cut(s)	450
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.