Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Forward (+)

46444214 .. 46455761

Gene Structure 11548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG186200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAGGCGACACCGCGGCTGCAACGCCGTCGTTTCATCCACCAAGCTCCCCGCGGAGCCCACCAGGCCCGTCAGATCCGCCGTGAAACCCTATGACGACGGTGGGGATCTGAATATTGGGGAGTTCGAGAAACACACAAAGGGCATCGGCATGAAATTGCAGATGAAGAAGATGGGCTATAACGGACGTGGACTCGGCAAAAACGAGGAAGGTATTGAAGCCGAATTGAGGTCCAAAAATGAAGGTCTTGGTTTTGATTACAAGGAGGGGACTAAGCTGCGGCGGCGGCCCACATCGTTTGTGAAAGCCAAGGTGGTGCACAAAACTGTCGCTGCTGGTGAAAATGATCACAAGAAGAGCAAAACAGAAATAACCAAAAAACCAAGTAGCCTAAACGCTAGTACAGTGGAAGAACACAAGCCCCACAAGCAGCCGCAGCGGCCAAATGAGGCAATTACCGGTGCCGCCGCCACCGGGATGGAGAAGAAGTCGACCACCAAAGGTGTCGATTTGCTGGGAAAGGTGATGGCTGATATGAGAAGACCTCTTGATGGAATCTTGGCCGACTTTGAGAATCTGAGTTTGATAGACAACAGCTCCAGGATGTACCTAGCTGCTGGTGAACTATTTGGTGGGGAGAGATTCATGAAACCATTCCGTGCTTTGTTCCCTCTTGAGAACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

228

Amino Acids

25.21

Weight (kDa)

9.77

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	461
AccI	GTMKAC	1 cut(s)	491
AccII	CGCG	2 cut(s)	15, 53
AclWI	GGATC	2 cut(s)	69, 114
AcoI	YGGCCR	2 cut(s)	440, 561
AfaI	GTAC	2 cut(s)	403, 608
AfiI	CCNNNNNNNGG	3 cut(s)	228, 474, 551
AgeI	ACCGGT	1 cut(s)	458
AgsI	TTSAA	1 cut(s)	218
AjiI	CACGTC	1 cut(s)	188
AjnI	CCWGG	2 cut(s)	62, 599
AluBI	AGCT	4 cut(s)	46, 277, 597, 614
AluI	AGCT	4 cut(s)	46, 277, 597, 614
Alw21I	GWGCWC	1 cut(s)	321
Alw44I	GTGCAC	1 cut(s)	317
AlwI	GGATC	2 cut(s)	69, 114
AoxI	GGCC	4 cut(s)	65, 287, 440, 561
ApaLI	GTGCAC	1 cut(s)	317
ApeKI	GCWGC	6 cut(s)	18, 277, 332, 430, 436, 614
AsiGI	ACCGGT	1 cut(s)	458
Asp700I	GAANNNNTTC	1 cut(s)	653
AspS9I	GGNCC	3 cut(s)	66, 231, 288
AsuC2I	CCSGG	1 cut(s)	475
AsuHPI	GGTGA	3 cut(s)	350, 535, 632
AvaII	GGWCC	1 cut(s)	231
BaeGI	GKGCMC	1 cut(s)	321
BanI	GGYRCC	1 cut(s)	461
BanII	GRGCYC	1 cut(s)	60
BbsI	GAAGAC	1 cut(s)	547
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	6 cut(s)	5, 264, 319, 442, 448, 601
BccI	CCATC	4 cut(s)	166, 472, 520, 545
BceAI	ACGGC	2 cut(s)	11, 65
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BciT130I	CCWGG	2 cut(s)	64, 601
BclI	TGATCA	1 cut(s)	346
BcnI	CCSGG	1 cut(s)	475
BfaI	CTAG	2 cut(s)	399, 611
BglI	GCCNNNNNGGC	2 cut(s)	64, 439
Bme1390I	CCNGG	3 cut(s)	64, 475, 601
Bme18I	GGWCC	1 cut(s)	231
BmgBI	CACGTC	1 cut(s)	188
BmgT120I	GGNCC	3 cut(s)	66, 231, 288
BmiI	GGNNCC	2 cut(s)	57, 463
BmrFI	CCNGG	3 cut(s)	64, 475, 601
BmsI	GCATC	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	547
BplI	GAGNNNNNCTC	2 cut(s)	529, 561
BpmI	CTGGAG	1 cut(s)	583
BpuMI	CCSGG	1 cut(s)	475
BsaJI	CCNNGG	3 cut(s)	13, 51, 309
BsaWI	WCCGGW	1 cut(s)	458
BsaXI	ACNNNNNCTCC	4 cut(s)	473, 503, 581, 611
Bsc4I	CCNNNNNNNGG	3 cut(s)	228, 474, 551
Bse118I	RCCGGY	1 cut(s)	458
Bse1I	ACTGG	1 cut(s)	682
BseBI	CCWGG	2 cut(s)	64, 601
BseDI	CCNNGG	3 cut(s)	13, 51, 309
BseGI	GGATG	3 cut(s)	35, 483, 609
BseLI	CCNNNNNNNGG	3 cut(s)	228, 474, 551
BseMII	CTCAG	1 cut(s)	569
BseNI	ACTGG	1 cut(s)	682
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	6 cut(s)	5, 264, 319, 442, 448, 601
BseYI	CCCAGC	1 cut(s)	514
Bsh1236I	CGCG	2 cut(s)	15, 53
BshFI	GGCC	4 cut(s)	67, 289, 442, 563
BshNI	GGYRCC	1 cut(s)	461
BshTI	ACCGGT	1 cut(s)	458
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	2 cut(s)	459, 474
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	3 cut(s)	228, 474, 551
BsmFI	GGGAC	1 cut(s)	283
BsnI	GGCC	4 cut(s)	67, 289, 442, 563
Bsp1286I	GDGCHC	2 cut(s)	60, 321
Bsp143I	GATC	3 cut(s)	74, 106, 346
BspANI	GGCC	4 cut(s)	67, 289, 442, 563
BspCNI	CTCAG	1 cut(s)	570
BspFNI	CGCG	2 cut(s)	15, 53
BspHI	TCATGA	1 cut(s)	645
BspLI	GGNNCC	2 cut(s)	57, 463
BspPI	GGATC	2 cut(s)	69, 114
BspQI	GCTCTTC	1 cut(s)	350
BspT107I	GGYRCC	1 cut(s)	461
BsrFI	RCCGGY	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	682
BssAI	RCCGGY	1 cut(s)	458
BssECI	CCNNGG	3 cut(s)	13, 51, 309
BssMI	GATC	3 cut(s)	74, 106, 346
BssT1I	CCWWGG	1 cut(s)	309
Bst2UI	CCWGG	2 cut(s)	64, 601
Bst4CI	ACNGT	3 cut(s)	101, 328, 406
Bst6I	CTCTTC	1 cut(s)	350
BstDEI	CTNAG	2 cut(s)	273, 578
BstDSI	CCRYGG	2 cut(s)	13, 51
BstF5I	GGATG	3 cut(s)	35, 483, 609
BstFNI	CGCG	2 cut(s)	15, 53
BstKTI	GATC	3 cut(s)	77, 109, 349
BstMBI	GATC	3 cut(s)	74, 106, 346
BstMWI	GCNNNNNNNGC	6 cut(s)	64, 283, 286, 427, 436, 439
BstNI	CCWGG	2 cut(s)	64, 601
BstSCI	CCNGG	3 cut(s)	62, 473, 599
BstSLI	GKGCMC	1 cut(s)	321
BstUI	CGCG	2 cut(s)	15, 53
BstV1I	GCAGC	6 cut(s)	5, 264, 319, 442, 448, 601
BstV2I	GAAGAC	1 cut(s)	547
BstX2I	RGATCY	2 cut(s)	74, 106
BstXI	CCANNNNNNTGG	1 cut(s)	478
BstYI	RGATCY	2 cut(s)	74, 106
BsuRI	GGCC	4 cut(s)	67, 289, 442, 563
BtgI	CCRYGG	2 cut(s)	13, 51
BtrI	CACGTC	1 cut(s)	188
BtsCI	GGATG	3 cut(s)	35, 483, 609
BtsIMutI	CAGTG	1 cut(s)	411
CciI	TCATGA	1 cut(s)	645
Cfr10I	RCCGGY	1 cut(s)	458
Cfr13I	GGNCC	3 cut(s)	66, 231, 288
Cfr42I	CCGCGG	2 cut(s)	16, 54
Csp6I	GTAC	2 cut(s)	402, 607
CspAI	ACCGGT	1 cut(s)	458
CspCI	CAANNNNNGTGG	2 cut(s)	280, 315
CviAII	CATG	2 cut(s)	151, 646
CviQI	GTAC	2 cut(s)	402, 607
DdeI	CTNAG	2 cut(s)	273, 578
DpnI	GATC	3 cut(s)	76, 108, 348
DpnII	GATC	3 cut(s)	74, 106, 346
EaeI	YGGCCR	2 cut(s)	440, 561
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
EciI	GGCGGA	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	231
EcoRII	CCWGG	2 cut(s)	62, 599
EcoT14I	CCWWGG	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	2 cut(s)	154, 649
FaiI	YATR	5 cut(s)	93, 152, 180, 536, 647
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	2 cut(s)	150, 645
FauI	CCCGC	1 cut(s)	58
FbaI	TGATCA	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	491
FokI	GGATG	3 cut(s)	22, 490, 616
FriOI	GRGCYC	1 cut(s)	60
FspBI	CTAG	2 cut(s)	399, 611
GsaI	CCCAGC	1 cut(s)	518
GsuI	CTGGAG	1 cut(s)	583
HaeIII	GGCC	4 cut(s)	67, 289, 442, 563
HapII	CCGG	2 cut(s)	459, 474
Hin1II	CATG	2 cut(s)	154, 649
HincII	GTYRAC	1 cut(s)	492
HindII	GTYRAC	1 cut(s)	492
HinfI	GANTC	4 cut(s)	192, 555, 574, 642
HpaII	CCGG	2 cut(s)	459, 474
HphI	GGTGA	3 cut(s)	350, 535, 632
Hpy166II	GTNNAC	4 cut(s)	191, 319, 492, 623
Hpy188I	TCNGA	3 cut(s)	74, 111, 579
Hpy188III	TCNNGA	4 cut(s)	127, 548, 646, 674
Hpy8I	GTNNAC	4 cut(s)	191, 319, 492, 623
Hpy99I	CGWCG	2 cut(s)	32, 101
HpyAV	CCTTC	2 cut(s)	203, 236
HpyCH4III	ACNGT	3 cut(s)	101, 328, 406
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	3 cut(s)	21, 160, 319
HpyF10VI	GCNNNNNNNGC	6 cut(s)	64, 283, 286, 427, 436, 439
HpyF3I	CTNAG	2 cut(s)	273, 578
HpySE526I	ACGT	1 cut(s)	187
Hsp92II	CATG	2 cut(s)	154, 649
Ksp22I	TGATCA	1 cut(s)	346
KspI	CCGCGG	2 cut(s)	16, 54
Kzo9I	GATC	3 cut(s)	74, 106, 346
LguI	GCTCTTC	1 cut(s)	350
LmnI	GCTCC	3 cut(s)	51, 55, 602
LpnPI	CCDG	9 cut(s)	49, 76, 321, 472, 487, 500, 586, 603, 613
Lsp1109I	GCAGC	6 cut(s)	5, 264, 319, 442, 448, 601
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	2 cut(s)	399, 611
MaeII	ACGT	1 cut(s)	187
MalI	GATC	3 cut(s)	76, 108, 348
MboI	GATC	3 cut(s)	74, 106, 346
MboII	GAAGA	6 cut(s)	178, 181, 367, 422, 496, 552
MflI	RGATCY	2 cut(s)	74, 106
MhlI	GDGCHC	2 cut(s)	60, 321
MluCI	AATT	3 cut(s)	155, 224, 453
MlyI	GAGTC	1 cut(s)	186
MnlI	CCTC	6 cut(s)	199, 222, 259, 442, 555, 681
MroXI	GAANNNNTTC	1 cut(s)	653
MslI	CAYNNNNRTG	2 cut(s)	149, 476
MspA1I	CMGCKG	3 cut(s)	15, 53, 439
MspI	CCGG	2 cut(s)	459, 474
MspR9I	CCNGG	3 cut(s)	64, 475, 601
MvaI	CCWGG	2 cut(s)	64, 601
MvnI	CGCG	2 cut(s)	15, 53
MwoI	GCNNNNNNNGC	6 cut(s)	64, 283, 286, 427, 436, 439
NciI	CCSGG	1 cut(s)	475
NdeII	GATC	3 cut(s)	74, 106, 346
NlaIII	CATG	2 cut(s)	154, 649
NlaIV	GGNNCC	2 cut(s)	57, 463
NmeAIII	GCCGAG	1 cut(s)	174
PagI	TCATGA	1 cut(s)	645
PciSI	GCTCTTC	1 cut(s)	350
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	653
PfeI	GAWTC	3 cut(s)	555, 574, 642
PfoI	TCCNGGA	1 cut(s)	599
PinAI	ACCGGT	1 cut(s)	458
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
Psp6I	CCWGG	2 cut(s)	62, 599
PspFI	CCCAGC	1 cut(s)	514
PspGI	CCWGG	2 cut(s)	62, 599
PspN4I	GGNNCC	2 cut(s)	57, 463
PspPI	GGNCC	3 cut(s)	66, 231, 288
PsuI	RGATCY	2 cut(s)	74, 106
RsaI	GTAC	2 cut(s)	403, 608
RsaNI	GTAC	2 cut(s)	402, 607
RseI	CAYNNNNRTG	2 cut(s)	149, 476
SacII	CCGCGG	2 cut(s)	16, 54
SalI	GTCGAC	1 cut(s)	490
SapI	GCTCTTC	1 cut(s)	350
Sau3AI	GATC	3 cut(s)	74, 106, 346
Sau96I	GGNCC	3 cut(s)	66, 231, 288
SchI	GAGTC	1 cut(s)	186
ScrFI	CCNGG	3 cut(s)	64, 475, 601
SduI	GDGCHC	2 cut(s)	60, 321
SfaNI	GCATC	1 cut(s)	153
Sfr303I	CCGCGG	2 cut(s)	16, 54
SgrBI	CCGCGG	2 cut(s)	16, 54
SinI	GGWCC	1 cut(s)	231
SmiMI	CAYNNNNRTG	2 cut(s)	149, 476
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
Sse9I	AATT	3 cut(s)	155, 224, 453
SspI	AATATT	1 cut(s)	115
SspMI	CTAG	2 cut(s)	399, 611
StyD4I	CCNGG	3 cut(s)	62, 473, 599
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	3 cut(s)	101, 328, 406
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	3 cut(s)	126, 491, 507
TasI	AATT	3 cut(s)	155, 224, 453
TatI	WGTACW	1 cut(s)	401
TauI	GCSGC	8 cut(s)	18, 283, 286, 289, 436, 442, 467, 470
TfiI	GAWTC	3 cut(s)	555, 574, 642
TscAI	CASTG	1 cut(s)	411
TseI	GCWGC	6 cut(s)	18, 277, 332, 430, 436, 614
TspDTI	ATGAA	6 cut(s)	24, 167, 179, 255, 634, 662
TspGWI	ACGGA	2 cut(s)	198, 647
TspRI	CASTG	1 cut(s)	411
VneI	GTGCAC	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	231
XmiI	GTMKAC	1 cut(s)	491
XmnI	GAANNNNTTC	1 cut(s)	653
XspI	CTAG	2 cut(s)	399, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.