Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Reverse (-)

43342811 .. 43345535

Gene Structure 2725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG244700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGATTTGAGGTCTGAAATCGATCGCCTTTCTCGCAAGCGCAATGAGAACAATCTCCGACGCGTCGTTGAGACCTCGGAAGGAAATCTCCGCATCTTCGCTCTCGCTTCCTCCTCCTCCGACCACGACGACGACGATGGAGACAACGGTGGCTCCAGAAAACGCATGAGGCGAGACCGCGGCTGCAACGCCGTCGTTTCATCCACCCAGCTTGCCGTGGAGCCCACCAGACCCGTCAGATCCGCCGTGAAACCCTATGACGACGGTGGGGATCTGAATATTGGGGAGTTCGAGAAACACACAAGGGGGATCGGCATGAAATTGCTGATGAAGATGGGCTATAATGGAGGAGGACTGGGGAAGAACGAGAAAGGTATTGTGAGGCCAATTGAAGCCGAATTGAGGCCCAAAAATAAAGGTCTTGGTTTTGATTACAAGGAGGGGGCTAAGCTGCGGCGGCGGACCACATTGTTTGTGAAAGCCAAGGTGGTGCACAAAAGTGTCGCTGCTGGTGACGAACATCACAAGAAGAGCAAAACAGAAATAGCCAAAAAACCAAGCGGCCAAAACAATAGTACAGTGGAAGAACACAAGCCCAACGAGCAGCCTAATGAGGCAATTACCAGTGCCGCCACCACCGGGATGGAGAAGAAGACGACTACCAAAGGTGTCGATTTGCTGGAAAAGGTGATGGCTGATATGAGAAGACCTCTTGATGGAATCTTGGCCGACTTTGAGAATCTGAGTTTGATAGACAACAGCTCCAGAAGTTCTGCAAATAATTTTGAGTCTTTCAAACTTGGTTTTGGTGCCGTCAGCGGTGATAAAGAGAAGATGTGCGGTGGAGCAGAGGCGCTGTGGAGCTGCAGGGATGAAGAGCTGAAGAGCGATGAAAAGTTGCTGTCTGTTTTGGCCTTTCGGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

308

Amino Acids

34.0

Weight (kDa)

9.06

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	101 - 142	3.5e-15	G-patch domain
G-patch_2	PF12656	104 - 145	2.2e-06	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	809
AccII	CGCG	2 cut(s)	63, 180
AclWI	GGATC	3 cut(s)	234, 279, 317
AcoI	YGGCCR	2 cut(s)	562, 726
AcuI	CTGAAG	1 cut(s)	902
AfaI	GTAC	1 cut(s)	577
AfiI	CCNNNNNNNGG	3 cut(s)	402, 639, 716
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	2 cut(s)	392, 796
AleI	CACNNNNGTG	1 cut(s)	498
AluBI	AGCT	5 cut(s)	211, 451, 762, 864, 880
AluI	AGCT	5 cut(s)	211, 451, 762, 864, 880
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	3 cut(s)	65, 135, 168
Alw44I	GTGCAC	1 cut(s)	491
AlwI	GGATC	3 cut(s)	234, 279, 317
AoxI	GGCC	5 cut(s)	383, 404, 562, 726, 912
ApaLI	GTGCAC	1 cut(s)	491
ApeKI	GCWGC	5 cut(s)	183, 451, 506, 604, 864
AspLEI	GCGC	2 cut(s)	42, 856
AspS9I	GGNCC	2 cut(s)	405, 462
AsuC2I	CCSGG	1 cut(s)	640
AsuHPI	GGTGA	3 cut(s)	524, 700, 833
AvaII	GGWCC	1 cut(s)	462
BaeGI	GKGCMC	1 cut(s)	495
BanI	GGYRCC	1 cut(s)	809
BanII	GRGCYC	1 cut(s)	225
BbsI	GAAGAC	2 cut(s)	659, 712
Bbv12I	GWGCWC	1 cut(s)	495
BbvI	GCAGC	5 cut(s)	170, 438, 493, 616, 851
BccI	CCATC	5 cut(s)	131, 328, 637, 685, 710
BceAI	ACGGC	4 cut(s)	176, 200, 230, 797
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BcnI	CCSGG	1 cut(s)	640
BcoDI	GTCTC	3 cut(s)	65, 135, 168
BfmI	CTRYAG	1 cut(s)	865
BfoI	RGCGCY	1 cut(s)	857
BlpI	GCTNAGC	1 cut(s)	447
Bme1390I	CCNGG	1 cut(s)	640
Bme18I	GGWCC	1 cut(s)	462
BmgT120I	GGNCC	2 cut(s)	405, 462
BmiI	GGNNCC	3 cut(s)	154, 222, 811
BmrFI	CCNGG	1 cut(s)	640
BmrI	ACTGGG	1 cut(s)	365
BmsI	GCATC	1 cut(s)	102
BmuI	ACTGGG	1 cut(s)	365
BpiI	GAAGAC	2 cut(s)	659, 712
BplI	GAGNNNNNCTC	2 cut(s)	694, 726
BpmI	CTGGAG	2 cut(s)	139, 748
Bpu1102I	GCTNAGC	1 cut(s)	447
BpuMI	CCSGG	1 cut(s)	640
Bsa29I	ATCGAT	1 cut(s)	21
BsaI	GGTCTC	2 cut(s)	65, 168
BsaJI	CCNNGG	4 cut(s)	75, 178, 216, 483
BsaXI	ACNNNNNCTCC	4 cut(s)	137, 167, 746, 776
Bsc4I	CCNNNNNNNGG	3 cut(s)	402, 639, 716
Bse1I	ACTGG	2 cut(s)	360, 624
Bse3DI	GCAATG	1 cut(s)	49
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	4 cut(s)	75, 178, 216, 483
BseGI	GGATG	3 cut(s)	200, 648, 877
BseLI	CCNNNNNNNGG	3 cut(s)	402, 639, 716
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	734
BseNI	ACTGG	2 cut(s)	360, 624
BseRI	GAGGAG	3 cut(s)	103, 106, 363
BseSI	GKGCMC	1 cut(s)	495
BseXI	GCAGC	5 cut(s)	170, 438, 493, 616, 851
BseYI	CCCAGC	1 cut(s)	207
Bsh1236I	CGCG	2 cut(s)	63, 180
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	5 cut(s)	385, 406, 564, 728, 914
BshNI	GGYRCC	1 cut(s)	809
BshVI	ATCGAT	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	495
BsiSI	CCGG	1 cut(s)	639
BslI	CCNNNNNNNGG	3 cut(s)	402, 639, 716
BsmAI	GTCTC	3 cut(s)	65, 135, 168
BsnI	GGCC	5 cut(s)	385, 406, 564, 728, 914
Bso31I	GGTCTC	2 cut(s)	65, 168
Bsp1286I	GDGCHC	2 cut(s)	225, 495
Bsp143I	GATC	4 cut(s)	22, 239, 271, 309
Bsp1720I	GCTNAGC	1 cut(s)	447
BspANI	GGCC	5 cut(s)	385, 406, 564, 728, 914
BspCNI	CTCAG	1 cut(s)	735
BspDI	ATCGAT	1 cut(s)	21
BspFNI	CGCG	2 cut(s)	63, 180
BspLI	GGNNCC	3 cut(s)	154, 222, 811
BspMAI	CTGCAG	1 cut(s)	869
BspPI	GGATC	3 cut(s)	234, 279, 317
BspQI	GCTCTTC	3 cut(s)	524, 870, 878
BspT107I	GGYRCC	1 cut(s)	809
BspTNI	GGTCTC	2 cut(s)	65, 168
BsrDI	GCAATG	1 cut(s)	49
BsrI	ACTGG	2 cut(s)	360, 624
BssECI	CCNNGG	4 cut(s)	75, 178, 216, 483
BssMI	GATC	4 cut(s)	22, 239, 271, 309
BssT1I	CCWWGG	1 cut(s)	483
Bst4CI	ACNGT	3 cut(s)	149, 266, 580
Bst6I	CTCTTC	3 cut(s)	524, 870, 878
BstC8I	GCNNGC	2 cut(s)	38, 213
BstDEI	CTNAG	2 cut(s)	447, 743
BstDSI	CCRYGG	2 cut(s)	178, 216
BstF5I	GGATG	3 cut(s)	200, 648, 877
BstFNI	CGCG	2 cut(s)	63, 180
BstH2I	RGCGCY	1 cut(s)	857
BstHHI	GCGC	2 cut(s)	42, 856
BstKTI	GATC	4 cut(s)	25, 242, 274, 312
BstMAI	GTCTC	3 cut(s)	65, 135, 168
BstMBI	GATC	4 cut(s)	22, 239, 271, 309
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 457, 601
BstSCI	CCNGG	1 cut(s)	638
BstSFI	CTRYAG	1 cut(s)	865
BstSLI	GKGCMC	1 cut(s)	495
BstUI	CGCG	2 cut(s)	63, 180
BstV1I	GCAGC	5 cut(s)	170, 438, 493, 616, 851
BstV2I	GAAGAC	2 cut(s)	659, 712
BstX2I	RGATCY	2 cut(s)	239, 271
BstXI	CCANNNNNNTGG	1 cut(s)	643
BstYI	RGATCY	2 cut(s)	239, 271
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	5 cut(s)	385, 406, 564, 728, 914
BsuTUI	ATCGAT	1 cut(s)	21
BtgI	CCRYGG	2 cut(s)	178, 216
BtgZI	GCGATG	1 cut(s)	903
BtsCI	GGATG	3 cut(s)	200, 648, 877
BtsIMutI	CAGTG	2 cut(s)	585, 631
Cac8I	GCNNGC	2 cut(s)	38, 213
CfoI	GCGC	2 cut(s)	42, 856
Cfr13I	GGNCC	2 cut(s)	405, 462
Cfr42I	CCGCGG	1 cut(s)	181
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	2 cut(s)	52, 69
Csp6I	GTAC	1 cut(s)	576
CspCI	CAANNNNNGTGG	4 cut(s)	193, 228, 454, 489
CviAII	CATG	2 cut(s)	166, 316
CviQI	GTAC	1 cut(s)	576
DdeI	CTNAG	2 cut(s)	447, 743
DpnI	GATC	4 cut(s)	24, 241, 273, 311
DpnII	GATC	4 cut(s)	22, 239, 271, 309
EaeI	YGGCCR	2 cut(s)	562, 726
Eam1104I	CTCTTC	3 cut(s)	524, 870, 878
EarI	CTCTTC	3 cut(s)	524, 870, 878
EciI	GGCGGA	2 cut(s)	232, 475
Eco130I	CCWWGG	1 cut(s)	483
Eco24I	GRGCYC	1 cut(s)	225
Eco31I	GGTCTC	2 cut(s)	65, 168
Eco47I	GGWCC	1 cut(s)	462
Eco57I	CTGAAG	1 cut(s)	902
EcoT14I	CCWWGG	1 cut(s)	483
EcoT38I	GRGCYC	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	2 cut(s)	169, 319
FaiI	YATR	5 cut(s)	167, 258, 317, 342, 701
FatI	CATG	2 cut(s)	165, 315
FokI	GGATG	3 cut(s)	187, 655, 884
FriOI	GRGCYC	1 cut(s)	225
GlaI	GCGC	2 cut(s)	41, 855
GsaI	CCCAGC	1 cut(s)	211
GsuI	CTGGAG	2 cut(s)	139, 748
HaeII	RGCGCY	1 cut(s)	857
HaeIII	GGCC	5 cut(s)	385, 406, 564, 728, 914
HapII	CCGG	1 cut(s)	639
HgaI	GACGC	2 cut(s)	52, 69
HhaI	GCGC	2 cut(s)	42, 856
Hin1II	CATG	2 cut(s)	169, 319
Hin6I	GCGC	2 cut(s)	40, 854
HinP1I	GCGC	2 cut(s)	40, 854
HinfI	GANTC	3 cut(s)	720, 739, 788
HpaII	CCGG	1 cut(s)	639
HphI	GGTGA	3 cut(s)	524, 700, 833
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	7 cut(s)	16, 59, 79, 121, 239, 276, 744
Hpy188III	TCNNGA	5 cut(s)	156, 292, 713, 765, 920
Hpy8I	GTNNAC	1 cut(s)	493
Hpy99I	CGWCG	7 cut(s)	63, 68, 131, 134, 137, 197, 266
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	3 cut(s)	149, 266, 580
HpyCH4V	TGCA	4 cut(s)	186, 493, 776, 867
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 457, 601
HpyF3I	CTNAG	2 cut(s)	447, 743
Hsp92II	CATG	2 cut(s)	169, 319
HspAI	GCGC	2 cut(s)	40, 854
KspI	CCGCGG	1 cut(s)	181
Kzo9I	GATC	4 cut(s)	22, 239, 271, 309
LguI	GCTCTTC	3 cut(s)	524, 870, 878
LmnI	GCTCC	5 cut(s)	158, 220, 767, 845, 861
Lsp1109I	GCAGC	5 cut(s)	170, 438, 493, 616, 851
LweI	GCATC	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	4 cut(s)	24, 241, 273, 311
MboI	GATC	4 cut(s)	22, 239, 271, 309
MfeI	CAATTG	1 cut(s)	387
MflI	RGATCY	2 cut(s)	239, 271
MhlI	GDGCHC	2 cut(s)	225, 495
MluCI	AATT	5 cut(s)	320, 387, 398, 618, 781
MluI	ACGCGT	1 cut(s)	61
MlyI	GAGTC	1 cut(s)	797
MmeI	TCCRAC	2 cut(s)	82, 144
MslI	CAYNNNNRTG	2 cut(s)	498, 641
MspA1I	CMGCKG	2 cut(s)	180, 819
MspI	CCGG	1 cut(s)	639
MspR9I	CCNGG	1 cut(s)	640
MunI	CAATTG	1 cut(s)	387
MvnI	CGCG	2 cut(s)	63, 180
MwoI	GCNNNNNNNGC	3 cut(s)	33, 457, 601
NciI	CCSGG	1 cut(s)	640
NdeII	GATC	4 cut(s)	22, 239, 271, 309
NlaIII	CATG	2 cut(s)	169, 319
NlaIV	GGNNCC	3 cut(s)	154, 222, 811
NmuCI	GTSAC	1 cut(s)	512
OliI	CACNNNNGTG	1 cut(s)	498
PciSI	GCTCTTC	3 cut(s)	524, 870, 878
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 169
PfeI	GAWTC	2 cut(s)	720, 739
Ple19I	CGATCG	1 cut(s)	25
PleI	GAGTC	1 cut(s)	796
PpsI	GAGTC	1 cut(s)	796
PspFI	CCCAGC	1 cut(s)	207
PspN4I	GGNNCC	3 cut(s)	154, 222, 811
PspPI	GGNCC	2 cut(s)	405, 462
PstI	CTGCAG	1 cut(s)	869
PsuI	RGATCY	2 cut(s)	239, 271
PvuI	CGATCG	1 cut(s)	25
RsaI	GTAC	1 cut(s)	577
RsaNI	GTAC	1 cut(s)	576
RseI	CAYNNNNRTG	2 cut(s)	498, 641
SacII	CCGCGG	1 cut(s)	181
SapI	GCTCTTC	3 cut(s)	524, 870, 878
Sau3AI	GATC	4 cut(s)	22, 239, 271, 309
Sau96I	GGNCC	2 cut(s)	405, 462
SchI	GAGTC	1 cut(s)	797
ScrFI	CCNGG	1 cut(s)	640
SduI	GDGCHC	2 cut(s)	225, 495
SfaNI	GCATC	1 cut(s)	102
SfcI	CTRYAG	1 cut(s)	865
Sfr303I	CCGCGG	1 cut(s)	181
SgrBI	CCGCGG	1 cut(s)	181
SinI	GGWCC	1 cut(s)	462
SmiMI	CAYNNNNRTG	2 cut(s)	498, 641
Sse9I	AATT	5 cut(s)	320, 387, 398, 618, 781
SspI	AATATT	1 cut(s)	280
StyD4I	CCNGG	1 cut(s)	638
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	3 cut(s)	149, 266, 580
TaqI	TCGA	3 cut(s)	21, 291, 672
TasI	AATT	5 cut(s)	320, 387, 398, 618, 781
TatI	WGTACW	1 cut(s)	575
TauI	GCSGC	5 cut(s)	183, 457, 460, 564, 632
TfiI	GAWTC	2 cut(s)	720, 739
TscAI	CASTG	2 cut(s)	585, 631
TseFI	GTSAC	1 cut(s)	512
TseI	GCWGC	5 cut(s)	183, 451, 506, 604, 864
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	5 cut(s)	189, 332, 344, 888, 906
TspRI	CASTG	2 cut(s)	585, 631
VneI	GTGCAC	1 cut(s)	491
VpaK11BI	GGWCC	1 cut(s)	462
XcmI	CCANNNNNNNNNTGG	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.