Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8302837.1

Orthogroup ID

OG0001296

Physical Location & Seq

Genomic Coordinates Forward (+)

127 .. 899

Gene Structure 773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8302837.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 773 bp

atggatttgaggtctgaaatcgatcgcctttctcgcaagcgcaaggagaacaatctccgacgcgtcgttgagacctcgaaaggaaatctccgcatcttcgctctcgcttcctcctcctccgaccacgacgacgacgatggagacaacggtggctccagaaaacgcatgaggcgagaccgcggctgcaacgccgtcgtttcatccacccagctcgccgtggagcccaccagacccgtcaggcccgccgtgaaaccctacgacgacggtggggatctgaatattggggagttcgagaaacacacgaggggcatcggcatgaaattgctgatgaagatgggatataacggacgtggactcggcaaaaacgaggaaggtattgtgatcccaattgaagccgaattgaggcccaaaaatgaaggtcttggttttgattacaaggaggggactaagctgcggcggcggcccacatcgtttgtgaaagccaaggtggtgcacaaaagtgtcgccgctggtgacaatgatcacaagaagagcaaaacagaaataaccaaaaaaccaagcggccaaaacaatagtacagtggaagaacacaagccccacaagcagccgcggcggcctaatgaggcaattaccagtgccgccgccaccgggatggagaagaagacgactaccaaaggtgtcgatttggtggaaaaggtgatggctgatatgagaagacctcttgatggaatcttggccgactttgagaatctgagtttgatagacaacagctc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

258

Amino Acids

28.63

Weight (kDa)

9.66

Isoelectric Point (pI)

50.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13670
rosa_chinensis	RchiOBHm_Chr4g0414401 RchiOBHm_Chr4g0414501
rosa_laevigata	RLG00000008128 RLG00000008130 RLG00000008132 RLG00000008133 RLG00000008135 RLG00000008148 RLG00000008149 RLG00000013053
rosa_multiflora	Rmu_co8302837.1_g000001 Rmu_sc0001192.1_g000007 Rmu_sc0001192.1_g000008 Rmu_sc0001192.1_g000015 Rmu_sc0001432.1_g000009 Rmu_sc0006138.1_g000003 Rmu_sc0006138.1_g000004 Rmu_sc0006138.1_g000006 Rmu_sc0007034.1_g000001 Rmu_sc0011089.1_g000001 Rmu_sc0012211.1_g000001 Rmu_sc0012211.1_g000003
rosa_roxburghii	Rroxscaffold_1G00012060 Rroxscaffold_5G00358310 Rroxscaffold_5G00358450 Rroxscaffold_7G00187960
rosa_rugosa	Rorug02G0278500 Rorug04G0128000 Rorug04G0129200
rosa_samantha	Rh4AG186200 Rh4AG186400 Rh4AG187300 Rh4AG187400 Rh4AG187500 Rh4BG185200 Rh4CG198500 Rh4CG198700 Rh4CG199800 Rh4DG183000 Rh4DG184200 Rh4DG184800 Rh4DG185800 Rh4DG185900 Rh4DG186100 Rh4DG186300 Rh4DG186400 Rh6AG244700 Rh6BG247100 Rh6CG248700 Rh6CG248900
rosa_wichuraiana	Rw4G015900 Rw4G016010 Rw4G016030 Rw6G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	63, 180, 610
AclWI	GGATC	2 cut(s)	279, 376
AcoI	YGGCCR	2 cut(s)	562, 735
AfaI	GTAC	1 cut(s)	577
AfiI	CCNNNNNNNGG	3 cut(s)	402, 648, 725
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	1 cut(s)	392
AjiI	CACGTC	1 cut(s)	350
AleI	CACNNNNGTG	1 cut(s)	498
AluBI	AGCT	3 cut(s)	211, 451, 771
AluI	AGCT	3 cut(s)	211, 451, 771
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	3 cut(s)	65, 135, 168
Alw44I	GTGCAC	1 cut(s)	491
AlwI	GGATC	2 cut(s)	279, 376
AoxI	GGCC	6 cut(s)	239, 404, 461, 562, 614, 735
ApaLI	GTGCAC	1 cut(s)	491
ApeKI	GCWGC	3 cut(s)	183, 451, 604
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	3 cut(s)	240, 405, 462
AsuC2I	CCSGG	1 cut(s)	649
AsuHPI	GGTGA	2 cut(s)	524, 709
BaeGI	GKGCMC	1 cut(s)	495
BanII	GRGCYC	1 cut(s)	225
BauI	CACGAG	1 cut(s)	301
BbsI	GAAGAC	2 cut(s)	668, 721
Bbv12I	GWGCWC	1 cut(s)	495
BbvI	GCAGC	3 cut(s)	170, 438, 616
BccI	CCATC	5 cut(s)	131, 328, 646, 694, 719
BceAI	ACGGC	3 cut(s)	176, 200, 230
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BclI	TGATCA	1 cut(s)	520
BcnI	CCSGG	1 cut(s)	649
BcoDI	GTCTC	3 cut(s)	65, 135, 168
BglI	GCCNNNNNGGC	1 cut(s)	613
Bme1390I	CCNGG	1 cut(s)	649
BmgBI	CACGTC	1 cut(s)	350
BmgT120I	GGNCC	3 cut(s)	240, 405, 462
BmiI	GGNNCC	2 cut(s)	154, 222
BmrFI	CCNGG	1 cut(s)	649
BmsI	GCATC	2 cut(s)	102, 318
BpiI	GAAGAC	2 cut(s)	668, 721
BplI	GAGNNNNNCTC	2 cut(s)	703, 735
BpmI	CTGGAG	1 cut(s)	139
BpuMI	CCSGG	1 cut(s)	649
Bsa29I	ATCGAT	1 cut(s)	21
BsaI	GGTCTC	2 cut(s)	65, 168
BsaJI	CCNNGG	4 cut(s)	178, 216, 483, 608
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	3 cut(s)	402, 648, 725
Bse1I	ACTGG	1 cut(s)	633
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	4 cut(s)	178, 216, 483, 608
BseGI	GGATG	2 cut(s)	200, 657
BseLI	CCNNNNNNNGG	3 cut(s)	402, 648, 725
BseMII	CTCAG	1 cut(s)	743
BseNI	ACTGG	1 cut(s)	633
BseRI	GAGGAG	2 cut(s)	103, 106
BseSI	GKGCMC	1 cut(s)	495
BseXI	GCAGC	3 cut(s)	170, 438, 616
BseYI	CCCAGC	1 cut(s)	207
Bsh1236I	CGCG	3 cut(s)	63, 180, 610
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	6 cut(s)	241, 406, 463, 564, 616, 737
BshVI	ATCGAT	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	495
BsiSI	CCGG	1 cut(s)	648
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	3 cut(s)	402, 648, 725
BsmAI	GTCTC	3 cut(s)	65, 135, 168
BsmFI	GGGAC	1 cut(s)	457
BsnI	GGCC	6 cut(s)	241, 406, 463, 564, 616, 737
Bso31I	GGTCTC	2 cut(s)	65, 168
Bsp1286I	GDGCHC	2 cut(s)	225, 495
Bsp143I	GATC	4 cut(s)	22, 271, 381, 520
BspANI	GGCC	6 cut(s)	241, 406, 463, 564, 616, 737
BspCNI	CTCAG	1 cut(s)	744
BspDI	ATCGAT	1 cut(s)	21
BspFNI	CGCG	3 cut(s)	63, 180, 610
BspLI	GGNNCC	2 cut(s)	154, 222
BspPI	GGATC	2 cut(s)	279, 376
BspQI	GCTCTTC	1 cut(s)	524
BspTNI	GGTCTC	2 cut(s)	65, 168
BsrI	ACTGG	1 cut(s)	633
BssECI	CCNNGG	4 cut(s)	178, 216, 483, 608
BssMI	GATC	4 cut(s)	22, 271, 381, 520
BssSI	CACGAG	1 cut(s)	301
BssT1I	CCWWGG	1 cut(s)	483
Bst2BI	CACGAG	1 cut(s)	301
Bst4CI	ACNGT	3 cut(s)	149, 266, 580
Bst6I	CTCTTC	1 cut(s)	524
BstC8I	GCNNGC	3 cut(s)	38, 213, 243
BstDEI	CTNAG	2 cut(s)	447, 752
BstDSI	CCRYGG	3 cut(s)	178, 216, 608
BstF5I	GGATG	2 cut(s)	200, 657
BstFNI	CGCG	3 cut(s)	63, 180, 610
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	4 cut(s)	25, 274, 384, 523
BstMAI	GTCTC	3 cut(s)	65, 135, 168
BstMBI	GATC	4 cut(s)	22, 271, 381, 520
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	6 cut(s)	33, 457, 460, 601, 610, 613
BstSCI	CCNGG	1 cut(s)	647
BstSLI	GKGCMC	1 cut(s)	495
BstUI	CGCG	3 cut(s)	63, 180, 610
BstV1I	GCAGC	3 cut(s)	170, 438, 616
BstV2I	GAAGAC	2 cut(s)	668, 721
BstX2I	RGATCY	1 cut(s)	271
BstXI	CCANNNNNNTGG	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	271
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	6 cut(s)	241, 406, 463, 564, 616, 737
BsuTUI	ATCGAT	1 cut(s)	21
BtgI	CCRYGG	3 cut(s)	178, 216, 608
BtrI	CACGTC	1 cut(s)	350
BtsCI	GGATG	2 cut(s)	200, 657
BtsIMutI	CAGTG	2 cut(s)	585, 640
Cac8I	GCNNGC	3 cut(s)	38, 213, 243
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	3 cut(s)	240, 405, 462
Cfr42I	CCGCGG	2 cut(s)	181, 611
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	2 cut(s)	52, 69
Csp6I	GTAC	1 cut(s)	576
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviAII	CATG	2 cut(s)	166, 316
CviQI	GTAC	1 cut(s)	576
DdeI	CTNAG	2 cut(s)	447, 752
DpnI	GATC	4 cut(s)	24, 273, 383, 522
DpnII	GATC	4 cut(s)	22, 271, 381, 520
EaeI	YGGCCR	2 cut(s)	562, 735
Eam1104I	CTCTTC	1 cut(s)	524
EarI	CTCTTC	1 cut(s)	524
Eco130I	CCWWGG	1 cut(s)	483
Eco24I	GRGCYC	1 cut(s)	225
Eco31I	GGTCTC	2 cut(s)	65, 168
EcoT14I	CCWWGG	1 cut(s)	483
EcoT38I	GRGCYC	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	2 cut(s)	169, 319
FaiI	YATR	4 cut(s)	167, 317, 342, 710
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	2 cut(s)	165, 315
FauI	CCCGC	1 cut(s)	250
FbaI	TGATCA	1 cut(s)	520
FokI	GGATG	2 cut(s)	187, 664
FriOI	GRGCYC	1 cut(s)	225
GlaI	GCGC	1 cut(s)	41
GsaI	CCCAGC	1 cut(s)	211
GsuI	CTGGAG	1 cut(s)	139
HaeIII	GGCC	6 cut(s)	241, 406, 463, 564, 616, 737
HapII	CCGG	1 cut(s)	648
HgaI	GACGC	2 cut(s)	52, 69
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	169, 319
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	3 cut(s)	354, 729, 748
HpaII	CCGG	1 cut(s)	648
HphI	GGTGA	2 cut(s)	524, 709
Hpy166II	GTNNAC	2 cut(s)	353, 493
Hpy188I	TCNGA	5 cut(s)	16, 59, 121, 276, 753
Hpy188III	TCNNGA	3 cut(s)	156, 292, 722
Hpy8I	GTNNAC	2 cut(s)	353, 493
Hpy99I	CGWCG	8 cut(s)	63, 68, 131, 134, 137, 197, 263, 266
HpyAV	CCTTC	2 cut(s)	365, 410
HpyCH4III	ACNGT	3 cut(s)	149, 266, 580
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	2 cut(s)	186, 493
HpyF10VI	GCNNNNNNNGC	6 cut(s)	33, 457, 460, 601, 610, 613
HpyF3I	CTNAG	2 cut(s)	447, 752
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	2 cut(s)	169, 319
HspAI	GCGC	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	520
KspI	CCGCGG	2 cut(s)	181, 611
Kzo9I	GATC	4 cut(s)	22, 271, 381, 520
LguI	GCTCTTC	1 cut(s)	524
LmnI	GCTCC	2 cut(s)	158, 220
LpnPI	CCDG	7 cut(s)	169, 221, 223, 241, 495, 646, 661
Lsp1109I	GCAGC	3 cut(s)	170, 438, 616
LweI	GCATC	2 cut(s)	102, 318
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	4 cut(s)	24, 273, 383, 522
MboI	GATC	4 cut(s)	22, 271, 381, 520
MboII	GAAGA	7 cut(s)	88, 343, 541, 596, 670, 673, 726
MfeI	CAATTG	1 cut(s)	387
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	2 cut(s)	225, 495
MluCI	AATT	4 cut(s)	320, 387, 398, 627
MluI	ACGCGT	1 cut(s)	61
MlyI	GAGTC	1 cut(s)	348
MmeI	TCCRAC	2 cut(s)	82, 144
MslI	CAYNNNNRTG	3 cut(s)	314, 498, 650
MspA1I	CMGCKG	3 cut(s)	180, 509, 610
MspI	CCGG	1 cut(s)	648
MspR9I	CCNGG	1 cut(s)	649
MunI	CAATTG	1 cut(s)	387
MvnI	CGCG	3 cut(s)	63, 180, 610
MwoI	GCNNNNNNNGC	6 cut(s)	33, 457, 460, 601, 610, 613
NciI	CCSGG	1 cut(s)	649
NdeII	GATC	4 cut(s)	22, 271, 381, 520
NlaIII	CATG	2 cut(s)	169, 319
NlaIV	GGNNCC	2 cut(s)	154, 222
NmeAIII	GCCGAG	1 cut(s)	336
NmuCI	GTSAC	1 cut(s)	512
OliI	CACNNNNGTG	1 cut(s)	498
PciSI	GCTCTTC	1 cut(s)	524
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 169, 363
PfeI	GAWTC	2 cut(s)	729, 748
Ple19I	CGATCG	1 cut(s)	25
PleI	GAGTC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	348
PspFI	CCCAGC	1 cut(s)	207
PspN4I	GGNNCC	2 cut(s)	154, 222
PspPI	GGNCC	3 cut(s)	240, 405, 462
PsuI	RGATCY	1 cut(s)	271
PvuI	CGATCG	1 cut(s)	25
RsaI	GTAC	1 cut(s)	577
RsaNI	GTAC	1 cut(s)	576
RseI	CAYNNNNRTG	3 cut(s)	314, 498, 650
SacII	CCGCGG	2 cut(s)	181, 611
SapI	GCTCTTC	1 cut(s)	524
Sau3AI	GATC	4 cut(s)	22, 271, 381, 520
Sau96I	GGNCC	3 cut(s)	240, 405, 462
SchI	GAGTC	1 cut(s)	348
ScrFI	CCNGG	1 cut(s)	649
SduI	GDGCHC	2 cut(s)	225, 495
SfaNI	GCATC	2 cut(s)	102, 318
Sfr303I	CCGCGG	2 cut(s)	181, 611
SgrBI	CCGCGG	2 cut(s)	181, 611
SmiMI	CAYNNNNRTG	3 cut(s)	314, 498, 650
Sse9I	AATT	4 cut(s)	320, 387, 398, 627
SspI	AATATT	1 cut(s)	280
StyD4I	CCNGG	1 cut(s)	647
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	3 cut(s)	149, 266, 580
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	4 cut(s)	21, 77, 291, 681
TasI	AATT	4 cut(s)	320, 387, 398, 627
TatI	WGTACW	1 cut(s)	575
TfiI	GAWTC	2 cut(s)	729, 748
TscAI	CASTG	2 cut(s)	585, 640
TseFI	GTSAC	1 cut(s)	512
TseI	GCWGC	3 cut(s)	183, 451, 604
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	4 cut(s)	189, 332, 344, 429
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	2 cut(s)	585, 640
VneI	GTGCAC	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.