Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Forward (+)

23548777 .. 23551876

Gene Structure 3100 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g32630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGGTGAACAACTTCCACACTTCCTCTTCTTACTCCTTACAAGTTGGGAAAGTTTGATCTTTCTCATAGAGCTAGCTAGTTATGTTATCTCTTTCAAGCCTTTCACTGGTCATATAGATGTAATCCATAGAGTTGTTTTAGCGCCATTGACTAGACAGAGATCGTATGGAAATGTTCCCCAGCCACATGCCATCTTATATTACTCGCAGAGAGCATCCAAAGGGGGTCTTCTAATAACTGAAGCCACTGGAGTTTCTGATACAGCACAAGGGTATCTAGATACTCCTGGCATATGGACAAAGGAGCATGTTGAAGCATGGAAACCCATTGTCAATGCTGTACATGCTAAAGGGGGTATCTTCTTCTGTCAGATTTGGCATGTTGGGAGGGTTTCAAATAGTGGCTTTCAGCCAAATGGGCAGGCTCCAATTTCTTGTACCGACAAGCCCCTAACCCCCCAAATACGATCTAATGGCATTGATGTTGCGCAATTCACACCTCCTAGACGATTAAGGACAGATGAAATTCCTCATATTGTCAATGATTTTAGACTTGCTGCAAGGAATGCGATGGAAGCTGGCTTTGATGGGGTTGAAATTCATGGCGCCAATGGCTACCTTATCGATCAGTTTTTAAAAGATCAAGTAAATGATCGAACAGATCAATATGGTGGATCTCTAGAAAACCGTTGCCGATTTGCACTAGAAATTGTTGAAGCTGTTGTCAACGAGATAGGAGCAGATAAAGTTGGAATTAGATCATCTCCATTTGCCGACTATATGGAAACTGGAGATTCTAATCCAAAGGAATTGGGCCTTTATCTTGCCAATGCCTTGAACAAATATGGAATCCTGTACTGCCACATGATTGAGCCAAGAATGAAGACAGTTGGAGAAAACTGTGAATGTCCCCACAGTCTTGTACCGATGAGAAAGGCTTTCAATGGTACCTTCATTGCTGCTGGTGGTTTTGACATGGAAGATGGGAATAATGCTGTAGCTGAGGACCGTGCAGATCTTATTGCTTTTGGTCGTTGGTTCTTGGCTAATCCAGATTTGCCAAAGAGATTTGAGCTTAAAGCTCCTCTAAATAAGTACATCAGAGATACGTTCTACATATCGGATCCAATTCTAGGTTACACTGATTATCCATTTCTTGACAGCACTGCACGAGTTTCCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

395

Amino Acids

43.94

Weight (kDa)

5.79

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	32 - 362	2.9e-82	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	489
Acc65I	GGTACC	1 cut(s)	947
AccB1I	GGYRCC	2 cut(s)	605, 947
AclWI	GGATC	3 cut(s)	682, 1118, 1131
AcsI	RAATTY	2 cut(s)	525, 597
AcuI	CTGAAG	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	606
AfaI	GTAC	6 cut(s)	342, 439, 857, 924, 949, 1097
AfiI	CCNNNNNNNGG	2 cut(s)	107, 1133
AgsI	TTSAA	7 cut(s)	97, 314, 396, 596, 716, 838, 943
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	8 cut(s)	73, 77, 578, 719, 1001, 1075, 1082, 1182
AluI	AGCT	8 cut(s)	73, 77, 578, 719, 1001, 1075, 1082, 1182
AlwI	GGATC	3 cut(s)	682, 1118, 1131
AoxI	GGCC	1 cut(s)	814
ApeKI	GCWGC	2 cut(s)	557, 959
ApoI	RAATTY	2 cut(s)	525, 597
Asp700I	GAANNNNTTC	1 cut(s)	12
Asp718I	GGTACC	1 cut(s)	947
AspLEI	GCGC	3 cut(s)	145, 490, 608
AspS9I	GGNCC	2 cut(s)	814, 1006
AsuHPI	GGTGA	1 cut(s)	17
AsuNHI	GCTAGC	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	1006
BaeI	ACNNNNGTAYC	2 cut(s)	257, 290
BamHI	GGATCC	1 cut(s)	1123
BanI	GGYRCC	2 cut(s)	605, 947
BauI	CACGAG	1 cut(s)	1170
BbsI	GAAGAC	2 cut(s)	221, 890
BbvCI	CCTCAGC	1 cut(s)	1002
BbvI	GCAGC	2 cut(s)	544, 946
BccI	CCATC	4 cut(s)	200, 565, 581, 977
BciT130I	CCWGG	1 cut(s)	288
BfaI	CTAG	8 cut(s)	74, 78, 153, 278, 504, 680, 704, 1133
BfmI	CTRYAG	1 cut(s)	996
BfoI	RGCGCY	2 cut(s)	146, 609
BglI	GCCNNNNNGGC	1 cut(s)	418
BglII	AGATCT	1 cut(s)	1015
BisI	GCNGC	2 cut(s)	558, 960
BlsI	GCNGC	2 cut(s)	559, 961
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	1006
BmgT120I	GGNCC	2 cut(s)	814, 1006
BmiI	GGNNCC	4 cut(s)	426, 607, 949, 1125
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	224
BmtI	GCTAGC	1 cut(s)	77
BpiI	GAAGAC	2 cut(s)	221, 890
BpmI	CTGGAG	2 cut(s)	270, 810
Bpu10I	CCTNAGC	1 cut(s)	1002
Bsa29I	ATCGAT	1 cut(s)	624
BsaBI	GATNNNNATC	1 cut(s)	798
BsaHI	GRCGYC	1 cut(s)	606
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 1133
Bse1I	ACTGG	3 cut(s)	112, 253, 793
Bse3DI	GCAATG	1 cut(s)	954
Bse8I	GATNNNNATC	1 cut(s)	798
BseBI	CCWGG	1 cut(s)	288
BseCI	ATCGAT	1 cut(s)	624
BseGI	GGATG	1 cut(s)	215
BseJI	GATNNNNATC	1 cut(s)	798
BseLI	CCNNNNNNNGG	2 cut(s)	107, 1133
BseMI	GCAATG	1 cut(s)	954
BseMII	CTCAG	1 cut(s)	993
BseNI	ACTGG	3 cut(s)	112, 253, 793
BseRI	GAGGAG	1 cut(s)	1074
BseXI	GCAGC	2 cut(s)	544, 946
BseYI	CCCAGC	1 cut(s)	180
BsgI	GTGCAG	2 cut(s)	1032, 1152
BshFI	GGCC	1 cut(s)	816
BshNI	GGYRCC	2 cut(s)	605, 947
BshVI	ATCGAT	1 cut(s)	624
BslFI	GGGAC	1 cut(s)	894
BslI	CCNNNNNNNGG	2 cut(s)	107, 1133
BsmFI	GGGAC	1 cut(s)	894
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	1 cut(s)	816
Bsp1407I	TGTACA	1 cut(s)	340
BspANI	GGCC	1 cut(s)	816
BspCNI	CTCAG	1 cut(s)	994
BspDI	ATCGAT	1 cut(s)	624
BspLI	GGNNCC	4 cut(s)	426, 607, 949, 1125
BspOI	GCTAGC	1 cut(s)	77
BspPI	GGATC	3 cut(s)	682, 1118, 1131
BspT107I	GGYRCC	2 cut(s)	605, 947
BsrDI	GCAATG	1 cut(s)	954
BsrGI	TGTACA	1 cut(s)	340
BsrI	ACTGG	3 cut(s)	112, 253, 793
BssNI	GRCGYC	1 cut(s)	606
BssSI	CACGAG	1 cut(s)	1170
Bst2BI	CACGAG	1 cut(s)	1170
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	5 cut(s)	689, 889, 902, 917, 1010
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	606
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstAUI	TGTACA	1 cut(s)	340
BstC8I	GCNNGC	3 cut(s)	75, 423, 580
BstDEI	CTNAG	1 cut(s)	1002
BstF5I	GGATG	1 cut(s)	215
BstH2I	RGCGCY	2 cut(s)	146, 609
BstHHI	GCGC	3 cut(s)	145, 490, 608
BstMWI	GCNNNNNNNGC	5 cut(s)	344, 418, 566, 575, 612
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	4 cut(s)	191, 311, 347, 383
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	996
BstV1I	GCAGC	2 cut(s)	544, 946
BstV2I	GAAGAC	2 cut(s)	221, 890
BstX2I	RGATCY	3 cut(s)	674, 1015, 1123
BstYI	RGATCY	3 cut(s)	674, 1015, 1123
Bsu15I	ATCGAT	1 cut(s)	624
BsuRI	GGCC	1 cut(s)	816
BsuTUI	ATCGAT	1 cut(s)	624
BtgZI	GCGATG	1 cut(s)	584
BtsCI	GGATG	1 cut(s)	215
BtsI	GCAGTG	1 cut(s)	1164
BtsIMutI	CAGTG	4 cut(s)	105, 246, 1140, 1164
Cac8I	GCNNGC	3 cut(s)	75, 423, 580
CfoI	GCGC	3 cut(s)	145, 490, 608
Cfr13I	GGNCC	2 cut(s)	814, 1006
ClaI	ATCGAT	1 cut(s)	624
Csp6I	GTAC	6 cut(s)	341, 438, 856, 923, 948, 1096
CviAII	CATG	8 cut(s)	188, 308, 318, 344, 380, 602, 865, 976
CviQI	GTAC	6 cut(s)	341, 438, 856, 923, 948, 1096
DdeI	CTNAG	1 cut(s)	1002
DinI	GGCGCC	1 cut(s)	607
DraI	TTTAAA	1 cut(s)	636
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	1006
Eco57I	CTGAAG	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	286
EgeI	GGCGCC	1 cut(s)	607
EheI	GGCGCC	1 cut(s)	607
FaeI	CATG	8 cut(s)	191, 311, 321, 347, 383, 605, 868, 979
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FaqI	GGGAC	1 cut(s)	894
FatI	CATG	8 cut(s)	187, 307, 317, 343, 379, 601, 864, 975
FauNDI	CATATG	1 cut(s)	293
Fnu4HI	GCNGC	2 cut(s)	558, 960
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	2 cut(s)	558, 960
FspBI	CTAG	8 cut(s)	74, 78, 153, 278, 504, 680, 704, 1133
FspI	TGCGCA	1 cut(s)	489
GlaI	GCGC	3 cut(s)	144, 489, 607
GluI	GCNGC	2 cut(s)	558, 960
GsaI	CCCAGC	1 cut(s)	184
GsuI	CTGGAG	2 cut(s)	270, 810
HaeII	RGCGCY	2 cut(s)	146, 609
HaeIII	GGCC	1 cut(s)	816
HhaI	GCGC	3 cut(s)	145, 490, 608
Hin1I	GRCGYC	1 cut(s)	606
Hin1II	CATG	8 cut(s)	191, 311, 321, 347, 383, 605, 868, 979
Hin6I	GCGC	3 cut(s)	143, 488, 606
HinP1I	GCGC	3 cut(s)	143, 488, 606
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HinfI	GANTC	2 cut(s)	794, 849
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	2 cut(s)	8, 727
Hpy188I	TCNGA	4 cut(s)	259, 372, 1103, 1123
Hpy188III	TCNNGA	4 cut(s)	278, 680, 1052, 1157
Hpy8I	GTNNAC	2 cut(s)	8, 727
HpyAV	CCTTC	1 cut(s)	961
HpyCH4III	ACNGT	5 cut(s)	689, 889, 902, 917, 1010
HpyCH4IV	ACGT	1 cut(s)	1109
HpyCH4V	TGCA	4 cut(s)	560, 701, 1013, 1169
HpyF10VI	GCNNNNNNNGC	5 cut(s)	344, 418, 566, 575, 612
HpyF3I	CTNAG	1 cut(s)	1002
HpySE526I	ACGT	1 cut(s)	1109
Hsp92I	GRCGYC	1 cut(s)	606
Hsp92II	CATG	8 cut(s)	191, 311, 321, 347, 383, 605, 868, 979
HspAI	GCGC	3 cut(s)	143, 488, 606
KasI	GGCGCC	1 cut(s)	605
KpnI	GGTACC	1 cut(s)	951
LmnI	GCTCC	4 cut(s)	304, 430, 737, 1087
Lsp1109I	GCAGC	2 cut(s)	544, 946
LweI	GCATC	1 cut(s)	224
MaeI	CTAG	8 cut(s)	74, 78, 153, 278, 504, 680, 704, 1133
MaeII	ACGT	1 cut(s)	1109
MaeIII	GTNAC	1 cut(s)	1136
MboII	GAAGA	6 cut(s)	19, 221, 352, 355, 895, 992
MflI	RGATCY	3 cut(s)	674, 1015, 1123
MluCI	AATT	8 cut(s)	429, 491, 525, 597, 708, 753, 809, 1128
Mly113I	GGCGCC	1 cut(s)	606
MmeI	TCCRAC	2 cut(s)	730, 871
MnlI	CCTC	6 cut(s)	35, 381, 510, 540, 997, 1095
MroXI	GAANNNNTTC	1 cut(s)	12
MseI	TTAA	3 cut(s)	512, 635, 1077
MslI	CAYNNNNRTG	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	1182
MspR9I	CCNGG	1 cut(s)	288
Mva1269I	GAATGC	1 cut(s)	571
MvaI	CCWGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	5 cut(s)	344, 418, 566, 575, 612
NarI	GGCGCC	1 cut(s)	606
NdeI	CATATG	1 cut(s)	293
NheI	GCTAGC	1 cut(s)	73
NlaIII	CATG	8 cut(s)	191, 311, 321, 347, 383, 605, 868, 979
NlaIV	GGNNCC	4 cut(s)	426, 607, 949, 1125
NsbI	TGCGCA	1 cut(s)	489
NspI	RCATGY	4 cut(s)	191, 311, 347, 383
PctI	GAATGC	1 cut(s)	571
PdmI	GAANNNNTTC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	794, 849
PkrI	GCNGC	2 cut(s)	559, 961
PluTI	GGCGCC	1 cut(s)	609
Psp6I	CCWGG	1 cut(s)	286
PspFI	CCCAGC	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	4 cut(s)	426, 607, 949, 1125
PspPI	GGNCC	2 cut(s)	814, 1006
PsuI	RGATCY	3 cut(s)	674, 1015, 1123
PvuII	CAGCTG	1 cut(s)	1182
RsaI	GTAC	6 cut(s)	342, 439, 857, 924, 949, 1097
RsaNI	GTAC	6 cut(s)	341, 438, 856, 923, 948, 1096
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	3 cut(s)	512, 635, 1077
SatI	GCNGC	2 cut(s)	558, 960
Sau96I	GGNCC	2 cut(s)	814, 1006
ScrFI	CCNGG	1 cut(s)	288
SfaNI	GCATC	1 cut(s)	224
SfcI	CTRYAG	1 cut(s)	996
SfoI	GGCGCC	1 cut(s)	607
SinI	GGWCC	1 cut(s)	1006
SmiMI	CAYNNNNRTG	1 cut(s)	117
Sse9I	AATT	8 cut(s)	429, 491, 525, 597, 708, 753, 809, 1128
SspDI	GGCGCC	1 cut(s)	605
SspMI	CTAG	8 cut(s)	74, 78, 153, 278, 504, 680, 704, 1133
StyD4I	CCNGG	1 cut(s)	286
TaaI	ACNGT	5 cut(s)	689, 889, 902, 917, 1010
TaiI	ACGT	1 cut(s)	1112
TaqI	TCGA	2 cut(s)	624, 655
TasI	AATT	8 cut(s)	429, 491, 525, 597, 708, 753, 809, 1128
TatI	WGTACW	3 cut(s)	340, 855, 1095
TfiI	GAWTC	2 cut(s)	794, 849
Tru1I	TTAA	3 cut(s)	512, 635, 1077
Tru9I	TTAA	3 cut(s)	512, 635, 1077
TscAI	CASTG	4 cut(s)	112, 253, 1147, 1171
TseI	GCWGC	2 cut(s)	557, 959
TspDTI	ATGAA	4 cut(s)	537, 590, 896, 943
TspRI	CASTG	4 cut(s)	112, 253, 1147, 1171
VpaK11BI	GGWCC	1 cut(s)	1006
XapI	RAATTY	2 cut(s)	525, 597
XbaI	TCTAGA	2 cut(s)	277, 679
XceI	RCATGY	4 cut(s)	191, 311, 347, 383
XmnI	GAANNNNTTC	1 cut(s)	12
XspI	CTAG	8 cut(s)	74, 78, 153, 278, 504, 680, 704, 1133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.