Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Reverse (-)

36137608 .. 36138000

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g36030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGAATCAGGGGATTCAGATCCAAAAGCGTTGGGCCTTTATCTGGCCAATTCGTTGAACAAATATGGGATCCTGTACTGCCATATGGTTGAGCCTAGGATGAAGACAGTTGGAGAAAAAAGTGATTGCCCCCAGAGTCTTGTACCCATGAGAAAGGCTTTTAATGGTACCTTCATTGCTGCTGGTGGTTATGACAGGGAAGATGGGAACAATGCTGTGGCTGAGGGCCGTGCAGATCTTATTGCTTATGGTCGTTGGTTCTTGGCTAACCCAGACTTGCCGAAGAGGTTTGAGCTTAATGCTCCTCTGAACGAGTACAACAGAAACACTTTCTACGTGTCTGAACCGGTTATTGGCTACACTGATTATCCGTTCCTTGACACCACTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

131

Amino Acids

14.51

Weight (kDa)

4.93

Isoelectric Point (pI)

41.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	26 - 103	1.3e-10	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	167
AccB1I	GGYRCC	1 cut(s)	167
AclWI	GGATC	3 cut(s)	14, 64, 77
AcoI	YGGCCR	1 cut(s)	45
AfaI	GTAC	4 cut(s)	77, 144, 169, 317
AfiI	CCNNNNNNNGG	2 cut(s)	43, 353
AflIII	ACRYGT	1 cut(s)	336
AgeI	ACCGGT	1 cut(s)	346
AgsI	TTSAA	1 cut(s)	58
AjuI	GAANNNNNNNTTGG	2 cut(s)	336, 368
AluBI	AGCT	1 cut(s)	295
AluI	AGCT	1 cut(s)	295
AlwI	GGATC	3 cut(s)	14, 64, 77
AoxI	GGCC	3 cut(s)	34, 45, 226
ApeKI	GCWGC	1 cut(s)	179
AsiGI	ACCGGT	1 cut(s)	346
Asp718I	GGTACC	1 cut(s)	167
AspA2I	CCTAGG	1 cut(s)	95
AspS9I	GGNCC	2 cut(s)	34, 226
AvrII	CCTAGG	1 cut(s)	95
BalI	TGGCCA	1 cut(s)	47
BamHI	GGATCC	1 cut(s)	69
BanI	GGYRCC	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	110
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	1 cut(s)	197
BceAI	ACGGC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	96
BglII	AGATCT	1 cut(s)	235
BisI	GCNGC	1 cut(s)	180
BlnI	CCTAGG	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	181
BmgT120I	GGNCC	2 cut(s)	34, 226
BmiI	GGNNCC	2 cut(s)	71, 169
BpiI	GAAGAC	1 cut(s)	110
Bpu10I	CCTNAGC	1 cut(s)	222
BsaAI	YACGTR	1 cut(s)	337
BsaBI	GATNNNNATC	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	95
BsaWI	WCCGGW	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 353
Bse118I	RCCGGY	1 cut(s)	346
Bse3DI	GCAATG	1 cut(s)	174
Bse8I	GATNNNNATC	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	105
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	2 cut(s)	43, 353
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	213
BseRI	GAGGAG	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	166
BsgI	GTGCAG	1 cut(s)	252
BshFI	GGCC	3 cut(s)	36, 47, 228
BshNI	GGYRCC	1 cut(s)	167
BshTI	ACCGGT	1 cut(s)	346
BsiSI	CCGG	1 cut(s)	347
BslI	CCNNNNNNNGG	2 cut(s)	43, 353
BsnI	GGCC	3 cut(s)	36, 47, 228
Bsp143I	GATC	3 cut(s)	19, 69, 235
BspANI	GGCC	3 cut(s)	36, 47, 228
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	2 cut(s)	71, 169
BspPI	GGATC	3 cut(s)	14, 64, 77
BspT107I	GGYRCC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	346
BssAI	RCCGGY	1 cut(s)	346
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	3 cut(s)	19, 69, 235
BssT1I	CCWWGG	1 cut(s)	95
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	278
BstBAI	YACGTR	1 cut(s)	337
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	105
BstKTI	GATC	3 cut(s)	22, 72, 238
BstMBI	GATC	3 cut(s)	19, 69, 235
BstV1I	GCAGC	1 cut(s)	166
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	3 cut(s)	19, 69, 235
BstYI	RGATCY	3 cut(s)	19, 69, 235
BsuRI	GGCC	3 cut(s)	36, 47, 228
BtsCI	GGATG	1 cut(s)	105
BtsI	GCAGTG	1 cut(s)	384
BtsIMutI	CAGTG	2 cut(s)	360, 384
Cfr10I	RCCGGY	1 cut(s)	346
Cfr13I	GGNCC	2 cut(s)	34, 226
Csp6I	GTAC	4 cut(s)	76, 143, 168, 316
CspAI	ACCGGT	1 cut(s)	346
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	9 cut(s)	36, 47, 94, 158, 221, 228, 266, 295, 357
CviKI_1	RGCY	9 cut(s)	36, 47, 94, 158, 221, 228, 266, 295, 357
CviQI	GTAC	4 cut(s)	76, 143, 168, 316
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	3 cut(s)	21, 71, 237
DpnII	GATC	3 cut(s)	19, 69, 235
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	1 cut(s)	151
FaiI	YATR	7 cut(s)	66, 84, 86, 149, 192, 249, 391
FatI	CATG	1 cut(s)	147
FauNDI	CATATG	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	1 cut(s)	112
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	1 cut(s)	96
GluI	GCNGC	1 cut(s)	180
HaeIII	GGCC	3 cut(s)	36, 47, 228
HapII	CCGG	1 cut(s)	347
Hin1II	CATG	1 cut(s)	151
HinfI	GANTC	3 cut(s)	5, 14, 136
HpaII	CCGG	1 cut(s)	347
Hpy188I	TCNGA	3 cut(s)	19, 309, 343
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	2 cut(s)	233, 389
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	1 cut(s)	151
KpnI	GGTACC	1 cut(s)	171
Kzo9I	GATC	3 cut(s)	19, 69, 235
LmnI	GCTCC	1 cut(s)	307
LpnPI	CCDG	7 cut(s)	29, 86, 146, 168, 181, 285, 360
Lsp1109I	GCAGC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	1 cut(s)	336
MalI	GATC	3 cut(s)	21, 71, 237
MboI	GATC	3 cut(s)	19, 69, 235
MboII	GAAGA	3 cut(s)	115, 212, 295
MflI	RGATCY	3 cut(s)	19, 69, 235
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	1 cut(s)	49
MluNI	TGGCCA	1 cut(s)	47
MlyI	GAGTC	1 cut(s)	145
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	3 cut(s)	217, 279, 315
Mox20I	TGGCCA	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	47
MseI	TTAA	2 cut(s)	162, 297
Msp20I	TGGCCA	1 cut(s)	47
MspI	CCGG	1 cut(s)	347
NdeI	CATATG	1 cut(s)	84
NdeII	GATC	3 cut(s)	19, 69, 235
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	2 cut(s)	71, 169
PfeI	GAWTC	2 cut(s)	5, 14
PinAI	ACCGGT	1 cut(s)	346
PkrI	GCNGC	1 cut(s)	181
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
Ppu21I	YACGTR	1 cut(s)	337
PspN4I	GGNNCC	2 cut(s)	71, 169
PspPI	GGNCC	2 cut(s)	34, 226
PsuI	RGATCY	3 cut(s)	19, 69, 235
RsaI	GTAC	4 cut(s)	77, 144, 169, 317
RsaNI	GTAC	4 cut(s)	76, 143, 168, 316
SaqAI	TTAA	2 cut(s)	162, 297
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	3 cut(s)	19, 69, 235
Sau96I	GGNCC	2 cut(s)	34, 226
SchI	GAGTC	1 cut(s)	145
SetI	ASST	4 cut(s)	173, 290, 297, 339
Sse9I	AATT	1 cut(s)	49
SspMI	CTAG	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	339
TasI	AATT	1 cut(s)	49
TatI	WGTACW	2 cut(s)	75, 315
TfiI	GAWTC	2 cut(s)	5, 14
Tru1I	TTAA	2 cut(s)	162, 297
Tru9I	TTAA	2 cut(s)	162, 297
TscAI	CASTG	2 cut(s)	367, 391
TseI	GCWGC	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	116, 163
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	2 cut(s)	367, 391
XmaJI	CCTAGG	1 cut(s)	95
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.