Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008506.1

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Reverse (-)

18680 .. 19619

Gene Structure 940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008506.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atgcaattcacacctccaagacgattaaggacagatgaaattcctcaaattgtcaatgatttcagacttgctgcaaggaatgccacggaagctggctttgatggggttgaaattcatggcgccaatggctaccttatagatcagtttttaaaagatcaagtaaatgatcgaacagaccaatatggtggatctctagaaaagcgttgccgatttgcactagacattgttgaagctgttgtcaatgagataggagcagataaagttggagttagatcatctccatttgccgactatatggaatctggagattctaatccaatggaattgggcctttatctagtcaattccttgaacaaatatggaatcctgtactgccacatggttgagccaagaatgaagacacttggacaaaaaattgaatgtccccagagtctcgtacccatgagaaaggcttttaatggtaccttcattgctgctggtggttttgacagggaagatgggaacaatgctgtggctgagggccgtgcagatcttattgcttttggtcgttggttcttggctaatccagatttgccaaagagatttgagcttaatgctcctctaaataagtacatcagagatacattctacatatctgatccggttcttggttacactgattatccatttcttgacagcaccgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

228

Amino Acids

25.58

Weight (kDa)

4.96

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	461
AccB1I	GGYRCC	2 cut(s)	119, 461
AciI	CCGC	1 cut(s)	681
AclWI	GGATC	2 cut(s)	196, 632
AcsI	RAATTY	2 cut(s)	39, 111
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	4 cut(s)	371, 438, 463, 611
AfiI	CCNNNNNNNGG	1 cut(s)	647
AgsI	TTSAA	4 cut(s)	110, 230, 352, 419
AluBI	AGCT	3 cut(s)	92, 233, 589
AluI	AGCT	3 cut(s)	92, 233, 589
Alw26I	GTCTC	1 cut(s)	437
AlwI	GGATC	2 cut(s)	196, 632
AoxI	GGCC	2 cut(s)	328, 520
ApeKI	GCWGC	2 cut(s)	71, 473
ApoI	RAATTY	2 cut(s)	39, 111
Asp718I	GGTACC	1 cut(s)	461
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	2 cut(s)	328, 520
BanI	GGYRCC	2 cut(s)	119, 461
BbsI	GAAGAC	1 cut(s)	404
BbvCI	CCTCAGC	1 cut(s)	516
BbvI	GCAGC	2 cut(s)	58, 460
BccI	CCATC	2 cut(s)	95, 491
BceAI	ACGGC	1 cut(s)	507
BcoDI	GTCTC	1 cut(s)	437
BfaI	CTAG	3 cut(s)	194, 218, 338
BfoI	RGCGCY	1 cut(s)	123
BglII	AGATCT	1 cut(s)	529
BisI	GCNGC	2 cut(s)	72, 474
BlsI	GCNGC	2 cut(s)	73, 475
BmgT120I	GGNCC	2 cut(s)	328, 520
BmiI	GGNNCC	2 cut(s)	121, 463
BpiI	GAAGAC	1 cut(s)	404
BpmI	CTGGAG	1 cut(s)	324
Bpu10I	CCTNAGC	1 cut(s)	516
BsaBI	GATNNNNATC	1 cut(s)	312
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	84
BsaWI	WCCGGW	1 cut(s)	640
Bsc4I	CCNNNNNNNGG	1 cut(s)	647
Bse3DI	GCAATG	1 cut(s)	468
Bse8I	GATNNNNATC	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	84
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	1 cut(s)	647
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	1 cut(s)	507
BseRI	GAGGAG	1 cut(s)	588
BseXI	GCAGC	2 cut(s)	58, 460
BsgI	GTGCAG	1 cut(s)	546
BshFI	GGCC	2 cut(s)	330, 522
BshNI	GGYRCC	2 cut(s)	119, 461
BsiSI	CCGG	1 cut(s)	641
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	1 cut(s)	647
BsmAI	GTCTC	1 cut(s)	437
BsmFI	GGGAC	1 cut(s)	408
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	2 cut(s)	330, 522
Bsp143I	GATC	7 cut(s)	139, 154, 166, 188, 272, 529, 637
BspACI	CCGC	1 cut(s)	681
BspANI	GGCC	2 cut(s)	330, 522
BspCNI	CTCAG	1 cut(s)	508
BspLI	GGNNCC	2 cut(s)	121, 463
BspPI	GGATC	2 cut(s)	196, 632
BspT107I	GGYRCC	2 cut(s)	119, 461
BsrDI	GCAATG	1 cut(s)	468
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	7 cut(s)	139, 154, 166, 188, 272, 529, 637
BssNI	GRCGYC	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	120
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	516
BstDSI	CCRYGG	1 cut(s)	84
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	7 cut(s)	142, 157, 169, 191, 275, 532, 640
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	7 cut(s)	139, 154, 166, 188, 272, 529, 637
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 89, 126
BstV1I	GCAGC	2 cut(s)	58, 460
BstV2I	GAAGAC	1 cut(s)	404
BstX2I	RGATCY	2 cut(s)	188, 529
BstXI	CCANNNNNNTGG	1 cut(s)	185
BstYI	RGATCY	2 cut(s)	188, 529
BsuRI	GGCC	2 cut(s)	330, 522
BtgI	CCRYGG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	654
Cac8I	GCNNGC	1 cut(s)	94
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	328, 520
Csp6I	GTAC	4 cut(s)	370, 437, 462, 610
CviAII	CATG	3 cut(s)	116, 379, 442
CviQI	GTAC	4 cut(s)	370, 437, 462, 610
DdeI	CTNAG	1 cut(s)	516
DinI	GGCGCC	1 cut(s)	121
DpnI	GATC	7 cut(s)	141, 156, 168, 190, 274, 531, 639
DpnII	GATC	7 cut(s)	139, 154, 166, 188, 272, 529, 637
DraI	TTTAAA	1 cut(s)	150
EgeI	GGCGCC	1 cut(s)	121
EheI	GGCGCC	1 cut(s)	121
FaeI	CATG	3 cut(s)	119, 382, 445
FaiI	YATR	9 cut(s)	117, 137, 183, 294, 296, 360, 380, 443, 632
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	3 cut(s)	115, 378, 441
Fnu4HI	GCNGC	2 cut(s)	72, 474
Fsp4HI	GCNGC	2 cut(s)	72, 474
FspBI	CTAG	3 cut(s)	194, 218, 338
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	2 cut(s)	72, 474
GsuI	CTGGAG	1 cut(s)	324
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	330, 522
HapII	CCGG	1 cut(s)	641
HhaI	GCGC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	3 cut(s)	119, 382, 445
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HinfI	GANTC	4 cut(s)	299, 308, 363, 430
HpaII	CCGG	1 cut(s)	641
Hpy188I	TCNGA	3 cut(s)	65, 617, 637
Hpy188III	TCNNGA	4 cut(s)	194, 303, 566, 671
HpyAV	CCTTC	1 cut(s)	475
HpyCH4V	TGCA	4 cut(s)	4, 74, 215, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 89, 126
HpyF3I	CTNAG	1 cut(s)	516
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	3 cut(s)	119, 382, 445
HspAI	GCGC	1 cut(s)	120
KasI	GGCGCC	1 cut(s)	119
KpnI	GGTACC	1 cut(s)	465
Kzo9I	GATC	7 cut(s)	139, 154, 166, 188, 272, 529, 637
LmnI	GCTCC	2 cut(s)	251, 601
LpnPI	CCDG	8 cut(s)	78, 288, 380, 440, 462, 475, 579, 654
Lsp1109I	GCAGC	2 cut(s)	58, 460
MaeI	CTAG	3 cut(s)	194, 218, 338
MaeIII	GTNAC	1 cut(s)	650
MalI	GATC	7 cut(s)	141, 156, 168, 190, 274, 531, 639
MboI	GATC	7 cut(s)	139, 154, 166, 188, 272, 529, 637
MboII	GAAGA	2 cut(s)	409, 506
MflI	RGATCY	2 cut(s)	188, 529
MluCI	AATT	7 cut(s)	5, 39, 48, 111, 323, 343, 414
Mly113I	GGCGCC	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	439
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	4 cut(s)	24, 54, 511, 609
MseI	TTAA	4 cut(s)	26, 149, 456, 591
MspI	CCGG	1 cut(s)	641
Mva1269I	GAATGC	1 cut(s)	85
MwoI	GCNNNNNNNGC	3 cut(s)	80, 89, 126
NarI	GGCGCC	1 cut(s)	120
NdeII	GATC	7 cut(s)	139, 154, 166, 188, 272, 529, 637
NlaIII	CATG	3 cut(s)	119, 382, 445
NlaIV	GGNNCC	2 cut(s)	121, 463
PctI	GAATGC	1 cut(s)	85
PfeI	GAWTC	3 cut(s)	299, 308, 363
PkrI	GCNGC	2 cut(s)	73, 475
PleI	GAGTC	1 cut(s)	438
PluTI	GGCGCC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	438
PspN4I	GGNNCC	2 cut(s)	121, 463
PspPI	GGNCC	2 cut(s)	328, 520
PsuI	RGATCY	2 cut(s)	188, 529
RsaI	GTAC	4 cut(s)	371, 438, 463, 611
RsaNI	GTAC	4 cut(s)	370, 437, 462, 610
SaqAI	TTAA	4 cut(s)	26, 149, 456, 591
SatI	GCNGC	2 cut(s)	72, 474
Sau3AI	GATC	7 cut(s)	139, 154, 166, 188, 272, 529, 637
Sau96I	GGNCC	2 cut(s)	328, 520
SchI	GAGTC	1 cut(s)	439
SetI	ASST	6 cut(s)	16, 94, 135, 235, 467, 591
SfoI	GGCGCC	1 cut(s)	121
Sse9I	AATT	7 cut(s)	5, 39, 48, 111, 323, 343, 414
SsiI	CCGC	1 cut(s)	681
SspDI	GGCGCC	1 cut(s)	119
SspMI	CTAG	3 cut(s)	194, 218, 338
TaqI	TCGA	1 cut(s)	169
TasI	AATT	7 cut(s)	5, 39, 48, 111, 323, 343, 414
TatI	WGTACW	2 cut(s)	369, 609
TfiI	GAWTC	3 cut(s)	299, 308, 363
Tru1I	TTAA	4 cut(s)	26, 149, 456, 591
Tru9I	TTAA	4 cut(s)	26, 149, 456, 591
TscAI	CASTG	1 cut(s)	661
TseI	GCWGC	2 cut(s)	71, 473
TspDTI	ATGAA	4 cut(s)	51, 104, 410, 457
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	661
XapI	RAATTY	2 cut(s)	39, 111
XbaI	TCTAGA	1 cut(s)	193
XspI	CTAG	3 cut(s)	194, 218, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.