Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Reverse (-)

50657747 .. 50658703

Gene Structure 957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G034220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCAATTCACACCTCCAAGACGCTTAAGGACAGATGAAATTCCTCAAATTGTCAATGATTTCAGACTTGCTGCGAGGAATGCTATGGAAGCTGGCTTTGACGGTGTTGAAATTCATGGCGCCCATGGCTACCTTATCGATCAGTTTTTAAAAGATAAAGTAAATGATCGAACAGACCAATATGGTGGATCTCTAGAAAATCGTTGCCGATTTGCACTAGACATTGTTGAAGCTGCCGTCAATGAGATAGGAGCAGACAAAGTTGGAATTAGATTATCTCCATTTGCTGACTATATGGAATCCGGAGATTCTAATCCAAAGGAATTGGGCCTTTATCTTGTCAATTCCTTGAACAAATATGGAATCCTGTACTGCCACATGGTTGAGCCAAGAATGAAGACAGTTGGGGAAAAAAGTGAAAGTCCCCACAGTCTTGTACCCATGAGAAAGGCTTTTAATGGTACCTTCATTGCTGCTGGTGGTTTTGACAGGGAAGATGGGAACAATGCTGTGGCTGAGGGCCGTGCAGATCTTATTGCTTTTGGTCGTTGGTTCTTGGCTAACCCAGATTTGCCAAAGAGATTTGAGCTTAATGCTCCTCTAAATAAGTACGACAGAGATACATTCTACATATCTGATCCGGTTCTTGGTTACACTGATTATCCATTTCTCGACAGCACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

228

Amino Acids

25.58

Weight (kDa)

5.07

Isoelectric Point (pI)

33.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	6 - 201	6.5e-55	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	461
AccB1I	GGYRCC	2 cut(s)	119, 461
AccIII	TCCGGA	1 cut(s)	302
AclWI	GGATC	2 cut(s)	196, 632
AcsI	RAATTY	2 cut(s)	39, 111
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	4 cut(s)	371, 438, 463, 611
AfiI	CCNNNNNNNGG	1 cut(s)	647
AflII	CTTAAG	1 cut(s)	25
AgsI	TTSAA	3 cut(s)	110, 230, 352
AluBI	AGCT	3 cut(s)	92, 233, 589
AluI	AGCT	3 cut(s)	92, 233, 589
AlwI	GGATC	2 cut(s)	196, 632
Aor13HI	TCCGGA	1 cut(s)	302
AoxI	GGCC	2 cut(s)	328, 520
ApeKI	GCWGC	3 cut(s)	71, 233, 473
ApoI	RAATTY	2 cut(s)	39, 111
Asp718I	GGTACC	1 cut(s)	461
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	2 cut(s)	328, 520
BanI	GGYRCC	2 cut(s)	119, 461
BbsI	GAAGAC	1 cut(s)	404
BbvCI	CCTCAGC	1 cut(s)	516
BbvI	GCAGC	3 cut(s)	58, 220, 460
BccI	CCATC	1 cut(s)	491
BceAI	ACGGC	2 cut(s)	221, 507
BcgI	CGANNNNNNTGC	1 cut(s)	662
BfaI	CTAG	2 cut(s)	194, 218
BfoI	RGCGCY	1 cut(s)	123
BfrI	CTTAAG	1 cut(s)	25
BglII	AGATCT	1 cut(s)	529
BisI	GCNGC	3 cut(s)	72, 234, 474
BlsI	GCNGC	3 cut(s)	73, 235, 475
BmgT120I	GGNCC	2 cut(s)	328, 520
BmiI	GGNNCC	2 cut(s)	121, 463
BpiI	GAAGAC	1 cut(s)	404
Bpu10I	CCTNAGC	1 cut(s)	516
Bsa29I	ATCGAT	1 cut(s)	138
BsaBI	GATNNNNATC	1 cut(s)	312
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	124
BsaWI	WCCGGW	2 cut(s)	302, 640
Bsc4I	CCNNNNNNNGG	1 cut(s)	647
Bse3DI	GCAATG	1 cut(s)	468
Bse8I	GATNNNNATC	1 cut(s)	312
BseAI	TCCGGA	1 cut(s)	302
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	124
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	1 cut(s)	647
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	1 cut(s)	507
BseRI	GAGGAG	1 cut(s)	588
BseXI	GCAGC	3 cut(s)	58, 220, 460
BsgI	GTGCAG	1 cut(s)	546
BshFI	GGCC	2 cut(s)	330, 522
BshNI	GGYRCC	2 cut(s)	119, 461
BshVI	ATCGAT	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	303, 641
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	1 cut(s)	647
BsmFI	GGGAC	1 cut(s)	408
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	2 cut(s)	330, 522
Bsp13I	TCCGGA	1 cut(s)	302
Bsp143I	GATC	5 cut(s)	139, 166, 188, 529, 637
Bsp19I	CCATGG	1 cut(s)	124
BspANI	GGCC	2 cut(s)	330, 522
BspCNI	CTCAG	1 cut(s)	508
BspDI	ATCGAT	1 cut(s)	138
BspEI	TCCGGA	1 cut(s)	302
BspLI	GGNNCC	2 cut(s)	121, 463
BspPI	GGATC	2 cut(s)	196, 632
BspT107I	GGYRCC	2 cut(s)	119, 461
BspTI	CTTAAG	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	468
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	5 cut(s)	139, 166, 188, 529, 637
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	124
Bst4CI	ACNGT	3 cut(s)	104, 403, 431
BstACI	GRCGYC	1 cut(s)	120
BstAFI	CTTAAG	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	516
BstDSI	CCRYGG	1 cut(s)	124
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	5 cut(s)	142, 169, 191, 532, 640
BstMBI	GATC	5 cut(s)	139, 166, 188, 529, 637
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 89, 126
BstV1I	GCAGC	3 cut(s)	58, 220, 460
BstV2I	GAAGAC	1 cut(s)	404
BstX2I	RGATCY	2 cut(s)	188, 529
BstXI	CCANNNNNNTGG	1 cut(s)	185
BstYI	RGATCY	2 cut(s)	188, 529
Bsu15I	ATCGAT	1 cut(s)	138
BsuRI	GGCC	2 cut(s)	330, 522
BsuTUI	ATCGAT	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	124
BtsI	GCAGTG	1 cut(s)	678
BtsIMutI	CAGTG	2 cut(s)	654, 678
Cac8I	GCNNGC	1 cut(s)	94
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	328, 520
ClaI	ATCGAT	1 cut(s)	138
CseI	GACGC	1 cut(s)	30
Csp6I	GTAC	4 cut(s)	370, 437, 462, 610
CviAII	CATG	4 cut(s)	116, 125, 379, 442
CviQI	GTAC	4 cut(s)	370, 437, 462, 610
DdeI	CTNAG	1 cut(s)	516
DinI	GGCGCC	1 cut(s)	121
DpnI	GATC	5 cut(s)	141, 168, 190, 531, 639
DpnII	GATC	5 cut(s)	139, 166, 188, 529, 637
DraI	TTTAAA	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	124
EgeI	GGCGCC	1 cut(s)	121
EheI	GGCGCC	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	4 cut(s)	119, 128, 382, 445
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	4 cut(s)	115, 124, 378, 441
Fnu4HI	GCNGC	3 cut(s)	72, 234, 474
Fsp4HI	GCNGC	3 cut(s)	72, 234, 474
FspBI	CTAG	2 cut(s)	194, 218
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	3 cut(s)	72, 234, 474
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	330, 522
HapII	CCGG	2 cut(s)	303, 641
HgaI	GACGC	1 cut(s)	30
HhaI	GCGC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	4 cut(s)	119, 128, 382, 445
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HinfI	GANTC	3 cut(s)	299, 308, 363
HpaII	CCGG	2 cut(s)	303, 641
Hpy188I	TCNGA	2 cut(s)	65, 637
Hpy188III	TCNNGA	3 cut(s)	194, 303, 671
HpyAV	CCTTC	1 cut(s)	475
HpyCH4III	ACNGT	3 cut(s)	104, 403, 431
HpyCH4V	TGCA	3 cut(s)	4, 215, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 89, 126
HpyF3I	CTNAG	1 cut(s)	516
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	4 cut(s)	119, 128, 382, 445
HspAI	GCGC	1 cut(s)	120
KasI	GGCGCC	1 cut(s)	119
Kpn2I	TCCGGA	1 cut(s)	302
KpnI	GGTACC	1 cut(s)	465
Kzo9I	GATC	5 cut(s)	139, 166, 188, 529, 637
LmnI	GCTCC	2 cut(s)	251, 601
LpnPI	CCDG	7 cut(s)	78, 316, 380, 462, 475, 579, 654
Lsp1109I	GCAGC	3 cut(s)	58, 220, 460
MaeI	CTAG	2 cut(s)	194, 218
MaeIII	GTNAC	1 cut(s)	650
MalI	GATC	5 cut(s)	141, 168, 190, 531, 639
MboI	GATC	5 cut(s)	139, 166, 188, 529, 637
MboII	GAAGA	2 cut(s)	409, 506
MflI	RGATCY	2 cut(s)	188, 529
MluCI	AATT	7 cut(s)	5, 39, 48, 111, 267, 323, 343
Mly113I	GGCGCC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	5 cut(s)	24, 54, 69, 511, 609
MroI	TCCGGA	1 cut(s)	302
MseI	TTAA	4 cut(s)	26, 149, 456, 591
MspCI	CTTAAG	1 cut(s)	25
MspI	CCGG	2 cut(s)	303, 641
Mva1269I	GAATGC	1 cut(s)	85
MwoI	GCNNNNNNNGC	3 cut(s)	80, 89, 126
NarI	GGCGCC	1 cut(s)	120
NcoI	CCATGG	1 cut(s)	124
NdeII	GATC	5 cut(s)	139, 166, 188, 529, 637
NlaIII	CATG	4 cut(s)	119, 128, 382, 445
NlaIV	GGNNCC	2 cut(s)	121, 463
PctI	GAATGC	1 cut(s)	85
PfeI	GAWTC	3 cut(s)	299, 308, 363
PkrI	GCNGC	3 cut(s)	73, 235, 475
PluTI	GGCGCC	1 cut(s)	123
PspN4I	GGNNCC	2 cut(s)	121, 463
PspPI	GGNCC	2 cut(s)	328, 520
PsuI	RGATCY	2 cut(s)	188, 529
RsaI	GTAC	4 cut(s)	371, 438, 463, 611
RsaNI	GTAC	4 cut(s)	370, 437, 462, 610
SaqAI	TTAA	4 cut(s)	26, 149, 456, 591
SatI	GCNGC	3 cut(s)	72, 234, 474
Sau3AI	GATC	5 cut(s)	139, 166, 188, 529, 637
Sau96I	GGNCC	2 cut(s)	328, 520
SetI	ASST	6 cut(s)	16, 94, 135, 235, 467, 591
SfoI	GGCGCC	1 cut(s)	121
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
Sse9I	AATT	7 cut(s)	5, 39, 48, 111, 267, 323, 343
SspDI	GGCGCC	1 cut(s)	119
SspMI	CTAG	2 cut(s)	194, 218
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	3 cut(s)	104, 403, 431
TaqI	TCGA	3 cut(s)	138, 169, 672
TasI	AATT	7 cut(s)	5, 39, 48, 111, 267, 323, 343
TatI	WGTACW	1 cut(s)	369
TfiI	GAWTC	3 cut(s)	299, 308, 363
Tru1I	TTAA	4 cut(s)	26, 149, 456, 591
Tru9I	TTAA	4 cut(s)	26, 149, 456, 591
TscAI	CASTG	2 cut(s)	661, 685
TseI	GCWGC	3 cut(s)	71, 233, 473
TspDTI	ATGAA	4 cut(s)	51, 104, 410, 457
TspRI	CASTG	2 cut(s)	661, 685
Vha464I	CTTAAG	1 cut(s)	25
XapI	RAATTY	2 cut(s)	39, 111
XbaI	TCTAGA	1 cut(s)	193
XspI	CTAG	2 cut(s)	194, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.