Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Reverse (-)

16413836 .. 16415922

Gene Structure 2087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001499

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGTTGTATTACCACATGCCAACTTATATTACTCGCAGAGAACATCTAAAGGAGGTCTTCTTATAGCTGAAGCCGCTGGAGTTTCTGACACAGCACAAGGGTATCCAGATACTCCTGGTATATGGACAAAGGAGCAAGTTGAAGCATGGAAACCCATTGTCAATGCTGTACATGATAAAGGGGGTATCTTCTTCTGTCAGATTTGGCATGGGGGGAGGGTTTCAAATACTGGCTTTCAGCCGGATGGGCAAGCTCCAATCTCTTCAACTGACAAGTCCCTAACCCCCAAAATAATATCTAATGGTATTGATGTTATGCAATTCACACCTCCAAGACGCTTAAGGACAGATGAAATTCCTCAAATTGTCAATGATTTCAGACTTGCTGCGAGGAATGCTATGGAAGCTGGCTTTGACGGTGTTGAAATTCATGGCGCCCATGGCTACCTTATCGATCAGTTTTTAAAAGATAAAGTAAATGATCGAACAGACCAATATGGTGGATCTCTAGAAAATCGTTGCCGATTTGCACTAGACATTGTTGAAGCTGCCGTCAATGAGATAGGAGCAGACAAAGTTGGAATTAGATTATCTCCATTTGCTGACTATATGGAATCCGGAGATTCTAATCCAAAGGAATTGGGCCTTTATCTTGTCAATTCCTTGAACAAATATGGAATCCTGTACTGCCACATGGTTGAGCCAAGAATGAAGACAGTTGAGGAAAAAAGTGAAAGTCCCCACAGTCTTGTACCCATGAGAAAGGCTTTTAATGGTACCTTCATTGCTGCTGGTGGTTTTGACAGGGAAGATGGGAACAATGCTGTGGCTGAGGGCCGTGCAGATCTTATTGCTTTTGGTCGTTGGTTCTTGGCTAACCCAGATCTGCCAAAGAGATTTGAGCTTAATGCTCCTCTAAATAAGTATGACAGAGATACATTCTACATATCTGATCCGGTTCTTGGTTACACTGATTATCCATTTCTTGACAGCACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

334

Amino Acids

36.89

Weight (kDa)

5.24

Isoelectric Point (pI)

27.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	8 - 306	6.2e-78	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	776
AccB1I	GGYRCC	2 cut(s)	434, 776
AccIII	TCCGGA	1 cut(s)	617
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	2 cut(s)	511, 947
AcsI	RAATTY	2 cut(s)	354, 426
AcuI	CTGAAG	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	435
AfaI	GTAC	4 cut(s)	171, 686, 753, 778
AfiI	CCNNNNNNNGG	1 cut(s)	962
AflII	CTTAAG	1 cut(s)	340
AgsI	TTSAA	6 cut(s)	143, 225, 267, 425, 545, 667
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	5 cut(s)	68, 254, 407, 548, 904
AluI	AGCT	5 cut(s)	68, 254, 407, 548, 904
AlwI	GGATC	2 cut(s)	511, 947
Aor13HI	TCCGGA	1 cut(s)	617
AoxI	GGCC	2 cut(s)	643, 835
ApeKI	GCWGC	3 cut(s)	386, 548, 788
ApoI	RAATTY	2 cut(s)	354, 426
Asp718I	GGTACC	1 cut(s)	776
AspLEI	GCGC	1 cut(s)	437
AspS9I	GGNCC	2 cut(s)	643, 835
BaeI	ACNNNNGTAYC	2 cut(s)	86, 119
BanI	GGYRCC	2 cut(s)	434, 776
BbsI	GAAGAC	2 cut(s)	50, 719
BbvCI	CCTCAGC	1 cut(s)	831
BbvI	GCAGC	3 cut(s)	373, 535, 775
BccI	CCATC	2 cut(s)	239, 806
BceAI	ACGGC	2 cut(s)	536, 822
BciT130I	CCWGG	1 cut(s)	117
BciVI	GTATCC	1 cut(s)	114
BfaI	CTAG	2 cut(s)	509, 533
BfoI	RGCGCY	1 cut(s)	438
BfrI	CTTAAG	1 cut(s)	340
BfuI	GTATCC	1 cut(s)	114
BglI	GCCNNNNNGGC	1 cut(s)	247
BglII	AGATCT	2 cut(s)	844, 883
BisI	GCNGC	4 cut(s)	75, 387, 549, 789
BlsI	GCNGC	4 cut(s)	76, 388, 550, 790
Bme1390I	CCNGG	1 cut(s)	117
BmgT120I	GGNCC	2 cut(s)	643, 835
BmiI	GGNNCC	2 cut(s)	436, 778
BmrFI	CCNGG	1 cut(s)	117
BpiI	GAAGAC	2 cut(s)	50, 719
BpmI	CTGGAG	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	831
Bsa29I	ATCGAT	1 cut(s)	453
BsaBI	GATNNNNATC	1 cut(s)	627
BsaHI	GRCGYC	1 cut(s)	435
BsaJI	CCNNGG	1 cut(s)	439
BsaWI	WCCGGW	2 cut(s)	617, 955
Bsc4I	CCNNNNNNNGG	1 cut(s)	962
Bse1I	ACTGG	1 cut(s)	235
Bse3DI	GCAATG	1 cut(s)	783
Bse8I	GATNNNNATC	1 cut(s)	627
BseAI	TCCGGA	1 cut(s)	617
BseBI	CCWGG	1 cut(s)	117
BseCI	ATCGAT	1 cut(s)	453
BseDI	CCNNGG	1 cut(s)	439
BseGI	GGATG	1 cut(s)	250
BseJI	GATNNNNATC	1 cut(s)	627
BseLI	CCNNNNNNNGG	1 cut(s)	962
BseMI	GCAATG	1 cut(s)	783
BseMII	CTCAG	1 cut(s)	822
BseNI	ACTGG	1 cut(s)	235
BseRI	GAGGAG	1 cut(s)	903
BseXI	GCAGC	3 cut(s)	373, 535, 775
BsgI	GTGCAG	1 cut(s)	861
BshFI	GGCC	2 cut(s)	645, 837
BshNI	GGYRCC	2 cut(s)	434, 776
BshVI	ATCGAT	1 cut(s)	453
BsiSI	CCGG	3 cut(s)	242, 618, 956
BslFI	GGGAC	2 cut(s)	262, 723
BslI	CCNNNNNNNGG	1 cut(s)	962
BsmFI	GGGAC	2 cut(s)	262, 723
BsmI	GAATGC	1 cut(s)	400
BsnI	GGCC	2 cut(s)	645, 837
Bsp13I	TCCGGA	1 cut(s)	617
Bsp1407I	TGTACA	1 cut(s)	169
Bsp143I	GATC	6 cut(s)	454, 481, 503, 844, 883, 952
Bsp19I	CCATGG	1 cut(s)	439
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	2 cut(s)	645, 837
BspCNI	CTCAG	1 cut(s)	823
BspDI	ATCGAT	1 cut(s)	453
BspEI	TCCGGA	1 cut(s)	617
BspLI	GGNNCC	2 cut(s)	436, 778
BspPI	GGATC	2 cut(s)	511, 947
BspT107I	GGYRCC	2 cut(s)	434, 776
BspTI	CTTAAG	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	783
BsrGI	TGTACA	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	439
BssMI	GATC	6 cut(s)	454, 481, 503, 844, 883, 952
BssNI	GRCGYC	1 cut(s)	435
BssT1I	CCWWGG	1 cut(s)	439
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	3 cut(s)	419, 718, 746
Bst6I	CTCTTC	1 cut(s)	268
BstACI	GRCGYC	1 cut(s)	435
BstAFI	CTTAAG	1 cut(s)	340
BstAUI	TGTACA	1 cut(s)	169
BstC8I	GCNNGC	2 cut(s)	252, 409
BstDEI	CTNAG	1 cut(s)	831
BstDSI	CCRYGG	1 cut(s)	439
BstF5I	GGATG	1 cut(s)	250
BstH2I	RGCGCY	1 cut(s)	438
BstHHI	GCGC	1 cut(s)	437
BstKTI	GATC	6 cut(s)	457, 484, 506, 847, 886, 955
BstMBI	GATC	6 cut(s)	454, 481, 503, 844, 883, 952
BstMWI	GCNNNNNNNGC	5 cut(s)	74, 247, 395, 404, 441
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	115
BstV1I	GCAGC	3 cut(s)	373, 535, 775
BstV2I	GAAGAC	2 cut(s)	50, 719
BstX2I	RGATCY	3 cut(s)	503, 844, 883
BstXI	CCANNNNNNTGG	1 cut(s)	500
BstYI	RGATCY	3 cut(s)	503, 844, 883
Bsu15I	ATCGAT	1 cut(s)	453
BsuI	GTATCC	1 cut(s)	114
BsuRI	GGCC	2 cut(s)	645, 837
BsuTUI	ATCGAT	1 cut(s)	453
BtgI	CCRYGG	1 cut(s)	439
BtsCI	GGATG	1 cut(s)	250
BtsI	GCAGTG	1 cut(s)	993
BtsIMutI	CAGTG	2 cut(s)	969, 993
Cac8I	GCNNGC	2 cut(s)	252, 409
CfoI	GCGC	1 cut(s)	437
Cfr13I	GGNCC	2 cut(s)	643, 835
ClaI	ATCGAT	1 cut(s)	453
CseI	GACGC	1 cut(s)	345
Csp6I	GTAC	4 cut(s)	170, 685, 752, 777
CviAII	CATG	8 cut(s)	17, 147, 173, 209, 431, 440, 694, 757
CviQI	GTAC	4 cut(s)	170, 685, 752, 777
DdeI	CTNAG	1 cut(s)	831
DinI	GGCGCC	1 cut(s)	436
DpnI	GATC	6 cut(s)	456, 483, 505, 846, 885, 954
DpnII	GATC	6 cut(s)	454, 481, 503, 844, 883, 952
DraI	TTTAAA	1 cut(s)	465
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	439
Eco57I	CTGAAG	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	439
EgeI	GGCGCC	1 cut(s)	436
EheI	GGCGCC	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	439
FaeI	CATG	8 cut(s)	20, 150, 176, 212, 434, 443, 697, 760
FalI	AAGNNNNNCTT	2 cut(s)	42, 74
FaqI	GGGAC	2 cut(s)	262, 723
FatI	CATG	8 cut(s)	16, 146, 172, 208, 430, 439, 693, 756
Fnu4HI	GCNGC	4 cut(s)	75, 387, 549, 789
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	4 cut(s)	75, 387, 549, 789
FspBI	CTAG	2 cut(s)	509, 533
GlaI	GCGC	1 cut(s)	436
GluI	GCNGC	4 cut(s)	75, 387, 549, 789
GsuI	CTGGAG	1 cut(s)	99
HaeII	RGCGCY	1 cut(s)	438
HaeIII	GGCC	2 cut(s)	645, 837
HapII	CCGG	3 cut(s)	242, 618, 956
HgaI	GACGC	1 cut(s)	345
HhaI	GCGC	1 cut(s)	437
Hin1I	GRCGYC	1 cut(s)	435
Hin1II	CATG	8 cut(s)	20, 150, 176, 212, 434, 443, 697, 760
Hin6I	GCGC	1 cut(s)	435
HinP1I	GCGC	1 cut(s)	435
HinfI	GANTC	3 cut(s)	614, 623, 678
HpaII	CCGG	3 cut(s)	242, 618, 956
Hpy188I	TCNGA	4 cut(s)	88, 201, 380, 952
Hpy188III	TCNNGA	4 cut(s)	107, 509, 618, 986
HpyAV	CCTTC	1 cut(s)	790
HpyCH4III	ACNGT	3 cut(s)	419, 718, 746
HpyCH4V	TGCA	3 cut(s)	319, 530, 842
HpyF10VI	GCNNNNNNNGC	5 cut(s)	74, 247, 395, 404, 441
HpyF3I	CTNAG	1 cut(s)	831
Hsp92I	GRCGYC	1 cut(s)	435
Hsp92II	CATG	8 cut(s)	20, 150, 176, 212, 434, 443, 697, 760
HspAI	GCGC	1 cut(s)	435
KasI	GGCGCC	1 cut(s)	434
Kpn2I	TCCGGA	1 cut(s)	617
KpnI	GGTACC	1 cut(s)	780
Kzo9I	GATC	6 cut(s)	454, 481, 503, 844, 883, 952
LmnI	GCTCC	4 cut(s)	133, 259, 566, 916
Lsp1109I	GCAGC	3 cut(s)	373, 535, 775
MaeI	CTAG	2 cut(s)	509, 533
MaeIII	GTNAC	1 cut(s)	965
MalI	GATC	6 cut(s)	456, 483, 505, 846, 885, 954
MboI	GATC	6 cut(s)	454, 481, 503, 844, 883, 952
MboII	GAAGA	6 cut(s)	50, 181, 184, 255, 724, 821
MflI	RGATCY	3 cut(s)	503, 844, 883
MluCI	AATT	7 cut(s)	320, 354, 363, 426, 582, 638, 658
Mly113I	GGCGCC	1 cut(s)	435
MmeI	TCCRAC	1 cut(s)	559
MnlI	CCTC	8 cut(s)	47, 210, 339, 369, 384, 715, 826, 924
MroI	TCCGGA	1 cut(s)	617
MseI	TTAA	4 cut(s)	341, 464, 771, 906
MspA1I	CMGCKG	1 cut(s)	77
MspCI	CTTAAG	1 cut(s)	340
MspI	CCGG	3 cut(s)	242, 618, 956
MspR9I	CCNGG	1 cut(s)	117
Mva1269I	GAATGC	1 cut(s)	400
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	5 cut(s)	74, 247, 395, 404, 441
NarI	GGCGCC	1 cut(s)	435
NcoI	CCATGG	1 cut(s)	439
NdeII	GATC	6 cut(s)	454, 481, 503, 844, 883, 952
NlaIII	CATG	8 cut(s)	20, 150, 176, 212, 434, 443, 697, 760
NlaIV	GGNNCC	2 cut(s)	436, 778
NspI	RCATGY	1 cut(s)	20
PctI	GAATGC	1 cut(s)	400
PfeI	GAWTC	3 cut(s)	614, 623, 678
PkrI	GCNGC	4 cut(s)	76, 388, 550, 790
PluTI	GGCGCC	1 cut(s)	438
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	2 cut(s)	436, 778
PspPI	GGNCC	2 cut(s)	643, 835
PsuI	RGATCY	3 cut(s)	503, 844, 883
RsaI	GTAC	4 cut(s)	171, 686, 753, 778
RsaNI	GTAC	4 cut(s)	170, 685, 752, 777
SaqAI	TTAA	4 cut(s)	341, 464, 771, 906
SatI	GCNGC	4 cut(s)	75, 387, 549, 789
Sau3AI	GATC	6 cut(s)	454, 481, 503, 844, 883, 952
Sau96I	GGNCC	2 cut(s)	643, 835
ScrFI	CCNGG	1 cut(s)	117
SetI	ASST	9 cut(s)	58, 70, 256, 331, 409, 450, 550, 782, 906
SfoI	GGCGCC	1 cut(s)	436
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
Sse9I	AATT	7 cut(s)	320, 354, 363, 426, 582, 638, 658
SsiI	CCGC	1 cut(s)	75
SspDI	GGCGCC	1 cut(s)	434
SspMI	CTAG	2 cut(s)	509, 533
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	1 cut(s)	439
TaaI	ACNGT	3 cut(s)	419, 718, 746
TaqI	TCGA	2 cut(s)	453, 484
TasI	AATT	7 cut(s)	320, 354, 363, 426, 582, 638, 658
TatI	WGTACW	2 cut(s)	169, 684
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	3 cut(s)	614, 623, 678
Tru1I	TTAA	4 cut(s)	341, 464, 771, 906
Tru9I	TTAA	4 cut(s)	341, 464, 771, 906
TscAI	CASTG	2 cut(s)	976, 1000
TseI	GCWGC	3 cut(s)	386, 548, 788
TspDTI	ATGAA	4 cut(s)	366, 419, 725, 772
TspRI	CASTG	2 cut(s)	976, 1000
Vha464I	CTTAAG	1 cut(s)	340
XapI	RAATTY	2 cut(s)	354, 426
XbaI	TCTAGA	1 cut(s)	508
XceI	RCATGY	1 cut(s)	20
XspI	CTAG	2 cut(s)	509, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.