Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Reverse (-)

16506588 .. 16509969

Gene Structure 3382 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001502

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCTAACCAAGCTCCCACACTTCCTCTTCTCACTCCTTACAAGTTGGGAAAGTTTGATCTTTCTCACAGAGTTGTTTTAGCGCCATTGACTAGACAGAGATCATATGGAAATGTTCCCCAGCCATCTGCCATCTTGTATTACTCTCAGAGAGCATCCAAAGGGGGTCTTCTCATAACTGAAGCCACTGGAGTTTCTGACACAGCACAAGGGTATCCAGATACTCCTGGTATATGGTCAAAAGAGCAAGTTGAAGCATGGAAACCCATTGTCAATGCTGTACATGCTAAAGGGGCTGTCTTCTTCTGTCAGATTTGGCATGCAGGGAGGGTTTCAAACAGTGACGTTCAACCAGATGGGCAAGCTCCAATCTCTTCTACTGACAAGTCCCTCGCCCCCCAAATAGGATCTAATGGTATTGATGTTACGCAATTCACACCTCCAAGACGGTTAAGGACGGATGAAATTCCTCAAATTGTCAATGATTTCAGACTTGCTGCAAGGAATGCCATGGAAGCTGGCTTTGATGGGGTTGAAATTCATGGCGCCAATGGCTACCTTATCGATCAGTTTTTAAAAGATCAAGTAAATGATCGAACAGACCAATATGGTGGATCTCTAGAAAAGCGTTGCCAATTTGCATTAGACATTGTTGAAGTTGTTGTCAACGAGATAGGAGCAGGTAAAGTTGGAATTAGATTTTCTCCATTTGCCAACTATATGGAATCTGGAGATTCTAACCCAAAGGAATTGGGCCTTTATCTAGTCAATTCCTTGAACAAATATGGAATGCTGTACTGCCACATGGTTGAGCCAAGAATGAAGACACTTGGAGAAAAAAGTGAGTGTCCCCAAAGTCTCGTACCCATGAGAAAGGCTTTCAATGGTACCTTCATTGCTGCTGGTGGTTTTGACAGGAAAGATGGGAACAATGCTGTGTCTGAGGGCCGTGCTGATCTTATTGCTTTTGGTCGTTGGTTCTTGGCTAATCCAGATTTGCCAAAGAGATTTGAGCTTAATGCTCCTCTAAATAAGTACGTCAGAGATACATTCTACATATCTGATCCCGTTCTTGGTTACACTGATCATCCATTTCTTGACAGCACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

371

Amino Acids

40.77

Weight (kDa)

6.33

Isoelectric Point (pI)

33.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	10 - 343	1.5e-85	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	671
Acc65I	GGTACC	1 cut(s)	887
AccB1I	GGYRCC	2 cut(s)	545, 887
AclWI	GGATC	3 cut(s)	415, 622, 1058
AcsI	RAATTY	2 cut(s)	465, 537
AcuI	CTGAAG	1 cut(s)	201
AcyI	GRCGYC	1 cut(s)	546
AfaI	GTAC	5 cut(s)	282, 797, 864, 889, 1037
AfiI	CCNNNNNNNGG	2 cut(s)	404, 1073
AgsI	TTSAA	7 cut(s)	254, 336, 350, 536, 656, 778, 883
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	4 cut(s)	14, 365, 518, 1015
AluI	AGCT	4 cut(s)	14, 365, 518, 1015
Alw26I	GTCTC	1 cut(s)	863
AlwI	GGATC	3 cut(s)	415, 622, 1058
AoxI	GGCC	2 cut(s)	754, 946
ApeKI	GCWGC	2 cut(s)	497, 899
ApoI	RAATTY	2 cut(s)	465, 537
Asp718I	GGTACC	1 cut(s)	887
AspLEI	GCGC	2 cut(s)	85, 548
AspS9I	GGNCC	2 cut(s)	754, 946
BaeI	ACNNNNGTAYC	2 cut(s)	197, 230
BanI	GGYRCC	2 cut(s)	545, 887
BbsI	GAAGAC	3 cut(s)	161, 292, 830
BbvI	GCAGC	2 cut(s)	484, 886
BccI	CCATC	5 cut(s)	133, 140, 350, 521, 917
BceAI	ACGGC	1 cut(s)	933
BciT130I	CCWGG	1 cut(s)	228
BciVI	GTATCC	1 cut(s)	225
BclI	TGATCA	1 cut(s)	1084
BcoDI	GTCTC	1 cut(s)	863
BfaI	CTAG	3 cut(s)	93, 620, 764
BfoI	RGCGCY	2 cut(s)	86, 549
BfuAI	ACCTGC	1 cut(s)	671
BfuI	GTATCC	1 cut(s)	225
BisI	GCNGC	2 cut(s)	498, 900
BlsI	GCNGC	2 cut(s)	499, 901
Bme1390I	CCNGG	1 cut(s)	228
BmgT120I	GGNCC	2 cut(s)	754, 946
BmiI	GGNNCC	2 cut(s)	547, 889
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	164
BpiI	GAAGAC	3 cut(s)	161, 292, 830
BpmI	CTGGAG	2 cut(s)	210, 750
Bsa29I	ATCGAT	1 cut(s)	564
BsaHI	GRCGYC	1 cut(s)	546
BsaJI	CCNNGG	1 cut(s)	510
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 1073
Bse1I	ACTGG	1 cut(s)	193
Bse3DI	GCAATG	1 cut(s)	894
BseBI	CCWGG	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	564
BseDI	CCNNGG	1 cut(s)	510
BseGI	GGATG	3 cut(s)	155, 466, 1087
BseLI	CCNNNNNNNGG	2 cut(s)	404, 1073
BseMI	GCAATG	1 cut(s)	894
BseMII	CTCAG	2 cut(s)	161, 933
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	1014
BseXI	GCAGC	2 cut(s)	484, 886
BseYI	CCCAGC	1 cut(s)	120
BshFI	GGCC	2 cut(s)	756, 948
BshNI	GGYRCC	2 cut(s)	545, 887
BshVI	ATCGAT	1 cut(s)	564
BslFI	GGGAC	2 cut(s)	373, 834
BslI	CCNNNNNNNGG	2 cut(s)	404, 1073
BsmAI	GTCTC	1 cut(s)	863
BsmFI	GGGAC	2 cut(s)	373, 834
BsmI	GAATGC	2 cut(s)	511, 795
BsnI	GGCC	2 cut(s)	756, 948
Bsp1407I	TGTACA	1 cut(s)	280
Bsp19I	CCATGG	1 cut(s)	510
BspANI	GGCC	2 cut(s)	756, 948
BspCNI	CTCAG	2 cut(s)	160, 934
BspDI	ATCGAT	1 cut(s)	564
BspLI	GGNNCC	2 cut(s)	547, 889
BspMI	ACCTGC	1 cut(s)	671
BspPI	GGATC	3 cut(s)	415, 622, 1058
BspT107I	GGYRCC	2 cut(s)	545, 887
BsrDI	GCAATG	1 cut(s)	894
BsrGI	TGTACA	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	510
BssNI	GRCGYC	1 cut(s)	546
BssT1I	CCWWGG	1 cut(s)	510
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	341, 450
Bst6I	CTCTTC	2 cut(s)	33, 379
BstACI	GRCGYC	1 cut(s)	546
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstAUI	TGTACA	1 cut(s)	280
BstC8I	GCNNGC	3 cut(s)	321, 363, 520
BstDEI	CTNAG	2 cut(s)	147, 942
BstDSI	CCRYGG	1 cut(s)	510
BstF5I	GGATG	3 cut(s)	155, 466, 1087
BstH2I	RGCGCY	2 cut(s)	86, 549
BstHHI	GCGC	2 cut(s)	85, 548
BstMAI	GTCTC	1 cut(s)	863
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 284, 293, 506, 515, 552
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	2 cut(s)	287, 323
BstSCI	CCNGG	1 cut(s)	226
BstV1I	GCAGC	2 cut(s)	484, 886
BstV2I	GAAGAC	3 cut(s)	161, 292, 830
BstX2I	RGATCY	2 cut(s)	407, 614
BstXI	CCANNNNNNTGG	2 cut(s)	611, 721
BstYI	RGATCY	2 cut(s)	407, 614
Bsu15I	ATCGAT	1 cut(s)	564
BsuI	GTATCC	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	756, 948
BsuTUI	ATCGAT	1 cut(s)	564
BtgI	CCRYGG	1 cut(s)	510
BtsCI	GGATG	3 cut(s)	155, 466, 1087
BtsI	GCAGTG	1 cut(s)	1104
BtsIMutI	CAGTG	4 cut(s)	186, 346, 1080, 1104
BveI	ACCTGC	1 cut(s)	671
Cac8I	GCNNGC	3 cut(s)	321, 363, 520
CfoI	GCGC	2 cut(s)	85, 548
Cfr13I	GGNCC	2 cut(s)	754, 946
ClaI	ATCGAT	1 cut(s)	564
Csp6I	GTAC	5 cut(s)	281, 796, 863, 888, 1036
CviAII	CATG	7 cut(s)	258, 284, 320, 511, 542, 805, 868
CviQI	GTAC	5 cut(s)	281, 796, 863, 888, 1036
DdeI	CTNAG	2 cut(s)	147, 942
DinI	GGCGCC	1 cut(s)	547
DraI	TTTAAA	1 cut(s)	576
Eam1104I	CTCTTC	2 cut(s)	33, 379
EarI	CTCTTC	2 cut(s)	33, 379
Eco130I	CCWWGG	1 cut(s)	510
Eco57I	CTGAAG	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	510
EgeI	GGCGCC	1 cut(s)	547
EheI	GGCGCC	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	510
FaeI	CATG	7 cut(s)	261, 287, 323, 514, 545, 808, 871
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FaqI	GGGAC	2 cut(s)	373, 834
FatI	CATG	7 cut(s)	257, 283, 319, 510, 541, 804, 867
FauNDI	CATATG	1 cut(s)	106
FbaI	TGATCA	1 cut(s)	1084
Fnu4HI	GCNGC	2 cut(s)	498, 900
FokI	GGATG	3 cut(s)	142, 473, 1074
Fsp4HI	GCNGC	2 cut(s)	498, 900
FspBI	CTAG	3 cut(s)	93, 620, 764
GlaI	GCGC	2 cut(s)	84, 547
GluI	GCNGC	2 cut(s)	498, 900
GsaI	CCCAGC	1 cut(s)	124
GsuI	CTGGAG	2 cut(s)	210, 750
HaeII	RGCGCY	2 cut(s)	86, 549
HaeIII	GGCC	2 cut(s)	756, 948
HhaI	GCGC	2 cut(s)	85, 548
Hin1I	GRCGYC	1 cut(s)	546
Hin1II	CATG	7 cut(s)	261, 287, 323, 514, 545, 808, 871
Hin6I	GCGC	2 cut(s)	83, 546
HinP1I	GCGC	2 cut(s)	83, 546
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HinfI	GANTC	2 cut(s)	725, 734
Hpy166II	GTNNAC	1 cut(s)	667
Hpy188I	TCNGA	7 cut(s)	150, 199, 312, 491, 943, 1043, 1063
Hpy188III	TCNNGA	5 cut(s)	218, 620, 729, 992, 1097
Hpy8I	GTNNAC	1 cut(s)	667
HpyAV	CCTTC	1 cut(s)	901
HpyCH4III	ACNGT	2 cut(s)	341, 450
HpyCH4IV	ACGT	2 cut(s)	345, 1038
HpyCH4V	TGCA	3 cut(s)	323, 500, 641
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 284, 293, 506, 515, 552
HpyF3I	CTNAG	2 cut(s)	147, 942
HpySE526I	ACGT	2 cut(s)	345, 1038
Hsp92I	GRCGYC	1 cut(s)	546
Hsp92II	CATG	7 cut(s)	261, 287, 323, 514, 545, 808, 871
HspAI	GCGC	2 cut(s)	83, 546
KasI	GGCGCC	1 cut(s)	545
KpnI	GGTACC	1 cut(s)	891
Ksp22I	TGATCA	1 cut(s)	1084
LmnI	GCTCC	4 cut(s)	19, 370, 677, 1027
Lsp1109I	GCAGC	2 cut(s)	484, 886
LweI	GCATC	1 cut(s)	164
MaeI	CTAG	3 cut(s)	93, 620, 764
MaeII	ACGT	2 cut(s)	345, 1038
MaeIII	GTNAC	3 cut(s)	341, 424, 1076
MboII	GAAGA	6 cut(s)	20, 161, 292, 295, 366, 835
MflI	RGATCY	2 cut(s)	407, 614
MluCI	AATT	8 cut(s)	431, 465, 474, 537, 635, 693, 749, 769
Mly113I	GGCGCC	1 cut(s)	546
MmeI	TCCRAC	1 cut(s)	670
MnlI	CCTC	7 cut(s)	36, 321, 401, 450, 480, 937, 1035
MseI	TTAA	3 cut(s)	452, 575, 1017
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	2 cut(s)	511, 795
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	6 cut(s)	11, 284, 293, 506, 515, 552
NarI	GGCGCC	1 cut(s)	546
NcoI	CCATGG	1 cut(s)	510
NdeI	CATATG	1 cut(s)	106
NlaIII	CATG	7 cut(s)	261, 287, 323, 514, 545, 808, 871
NlaIV	GGNNCC	2 cut(s)	547, 889
NmuCI	GTSAC	1 cut(s)	341
NspI	RCATGY	2 cut(s)	287, 323
PaeI	GCATGC	1 cut(s)	323
PctI	GAATGC	2 cut(s)	511, 795
PfeI	GAWTC	2 cut(s)	725, 734
PkrI	GCNGC	2 cut(s)	499, 901
PluTI	GGCGCC	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	547, 889
PspPI	GGNCC	2 cut(s)	754, 946
PsuI	RGATCY	2 cut(s)	407, 614
RsaI	GTAC	5 cut(s)	282, 797, 864, 889, 1037
RsaNI	GTAC	5 cut(s)	281, 796, 863, 888, 1036
SaqAI	TTAA	3 cut(s)	452, 575, 1017
SatI	GCNGC	2 cut(s)	498, 900
Sau96I	GGNCC	2 cut(s)	754, 946
ScrFI	CCNGG	1 cut(s)	228
SfaNI	GCATC	1 cut(s)	164
SfoI	GGCGCC	1 cut(s)	547
SphI	GCATGC	1 cut(s)	323
Sse9I	AATT	8 cut(s)	431, 465, 474, 537, 635, 693, 749, 769
SspDI	GGCGCC	1 cut(s)	545
SspMI	CTAG	3 cut(s)	93, 620, 764
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	2 cut(s)	341, 450
TaiI	ACGT	2 cut(s)	348, 1041
TaqI	TCGA	2 cut(s)	564, 595
TasI	AATT	8 cut(s)	431, 465, 474, 537, 635, 693, 749, 769
TatI	WGTACW	2 cut(s)	280, 795
TfiI	GAWTC	2 cut(s)	725, 734
Tru1I	TTAA	3 cut(s)	452, 575, 1017
Tru9I	TTAA	3 cut(s)	452, 575, 1017
TscAI	CASTG	4 cut(s)	193, 346, 1087, 1111
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	2 cut(s)	497, 899
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	4 cut(s)	477, 530, 836, 883
TspGWI	ACGGA	1 cut(s)	473
TspRI	CASTG	4 cut(s)	193, 346, 1087, 1111
XapI	RAATTY	2 cut(s)	465, 537
XbaI	TCTAGA	1 cut(s)	619
XceI	RCATGY	2 cut(s)	287, 323
XspI	CTAG	3 cut(s)	93, 620, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.