Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Reverse (-)

15015176 .. 15026430

Gene Structure 11255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00230240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAGTCAAGGAAGAATCAAGGTCGGAGAAAGAAAAGAGGAAAAAATGGCACAAGAAGACGGAAAAAACAGCATGGTGGCTTTGATGGGGTTGAAATTCATGGCGCCAATGGCTACCTTATAGATCAGTTTTTAAAAGATCAAGTAAATGATCGAACAGACCAATATGGTGGATCTCTAGAAAAGCGTTGCCGATTTGCACTAGACATTGTGGAAGCTGTTGTCAATGAGATAGGAGCAGATAAAGTTGGAGTTAGATTATCTCCATTTGCCGACTATATGGAATCTGGAGATTCTAATCCAAAGGAATTGGGCCTTTATCTAGTCAACTCCTTGAACAAATATGGAATCCTGTACTGCCACATGGTTGAGCCAAGAATGAAGACACTTGGAGAAAAAATTGAATGTCCCCAGAGTCTCGTACCCATGAGAAAGGCTTTTAATGGTACCTTCATTGCTGCTGGTGGTTTTGACAGGGAAGATGGGAACAATGCTGTGGCTGAGGGACGTGCGGATCTTATTGCTTTTGGTCGTTGGTTCTTGGCTAATCCAGATTTGCCAAAGAGATTTGAGCTTAATGCTCCTCTAAATAAGTACATCAGAGATACATTCTATTCCTATAACTTTTACTCTCTGCATGATCATGATTCTTCATCATCATATTGGTTCAAAGCCCCATATGAAGATGAAGTTTTATCTTTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

235

Amino Acids

26.86

Weight (kDa)

8.82

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	24 - 196	7.3e-47	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	446
AccB1I	GGYRCC	2 cut(s)	104, 446
AciI	CCGC	1 cut(s)	512
AclWI	GGATC	2 cut(s)	181, 522
AcsI	RAATTY	1 cut(s)	96
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	4 cut(s)	356, 423, 448, 596
AgsI	TTSAA	4 cut(s)	95, 337, 404, 670
AjiI	CACGTC	1 cut(s)	509
AluBI	AGCT	2 cut(s)	218, 574
AluI	AGCT	2 cut(s)	218, 574
Alw26I	GTCTC	1 cut(s)	422
AlwI	GGATC	2 cut(s)	181, 522
AoxI	GGCC	1 cut(s)	313
ApeKI	GCWGC	1 cut(s)	458
ApoI	RAATTY	1 cut(s)	96
Asp718I	GGTACC	1 cut(s)	446
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	313
BanI	GGYRCC	2 cut(s)	104, 446
BbsI	GAAGAC	2 cut(s)	64, 389
BbvCI	CCTCAGC	1 cut(s)	501
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	2 cut(s)	80, 476
BclI	TGATCA	1 cut(s)	640
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	3 cut(s)	179, 203, 323
BfoI	RGCGCY	1 cut(s)	108
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
BmgBI	CACGTC	1 cut(s)	509
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	2 cut(s)	106, 448
BpiI	GAAGAC	2 cut(s)	64, 389
BpmI	CTGGAG	1 cut(s)	309
Bpu10I	CCTNAGC	1 cut(s)	501
BsaBI	GATNNNNATC	1 cut(s)	297
BsaHI	GRCGYC	1 cut(s)	105
BsaWI	WCCGGW	1 cut(s)	702
Bse3DI	GCAATG	1 cut(s)	453
Bse8I	GATNNNNATC	1 cut(s)	297
BseJI	GATNNNNATC	1 cut(s)	297
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	1 cut(s)	492
BseRI	GAGGAG	1 cut(s)	573
BseXI	GCAGC	1 cut(s)	445
BshFI	GGCC	1 cut(s)	315
BshNI	GGYRCC	2 cut(s)	104, 446
BsiSI	CCGG	1 cut(s)	703
BslFI	GGGAC	2 cut(s)	393, 519
BsmAI	GTCTC	1 cut(s)	422
BsmFI	GGGAC	2 cut(s)	393, 519
BsnI	GGCC	1 cut(s)	315
Bsp143I	GATC	6 cut(s)	124, 139, 151, 173, 514, 640
BspACI	CCGC	1 cut(s)	512
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	1 cut(s)	493
BspHI	TCATGA	1 cut(s)	643
BspLI	GGNNCC	2 cut(s)	106, 448
BspPI	GGATC	2 cut(s)	181, 522
BspT107I	GGYRCC	2 cut(s)	104, 446
BsrDI	GCAATG	1 cut(s)	453
BssMI	GATC	6 cut(s)	124, 139, 151, 173, 514, 640
BssNI	GRCGYC	1 cut(s)	105
BstACI	GRCGYC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	501
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	6 cut(s)	127, 142, 154, 176, 517, 643
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	6 cut(s)	124, 139, 151, 173, 514, 640
BstMWI	GCNNNNNNNGC	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	445
BstV2I	GAAGAC	2 cut(s)	64, 389
BstX2I	RGATCY	2 cut(s)	173, 514
BstXI	CCANNNNNNTGG	1 cut(s)	170
BstYI	RGATCY	2 cut(s)	173, 514
BsuRI	GGCC	1 cut(s)	315
BtrI	CACGTC	1 cut(s)	509
CciI	TCATGA	1 cut(s)	643
CfoI	GCGC	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	313
Csp6I	GTAC	4 cut(s)	355, 422, 447, 595
CviAII	CATG	6 cut(s)	74, 101, 364, 427, 638, 644
CviQI	GTAC	4 cut(s)	355, 422, 447, 595
DdeI	CTNAG	1 cut(s)	501
DinI	GGCGCC	1 cut(s)	106
DpnI	GATC	6 cut(s)	126, 141, 153, 175, 516, 642
DpnII	GATC	6 cut(s)	124, 139, 151, 173, 514, 640
DraI	TTTAAA	1 cut(s)	135
EgeI	GGCGCC	1 cut(s)	106
EheI	GGCGCC	1 cut(s)	106
FaeI	CATG	6 cut(s)	77, 104, 367, 430, 641, 647
FaqI	GGGAC	2 cut(s)	393, 519
FatI	CATG	6 cut(s)	73, 100, 363, 426, 637, 643
FauNDI	CATATG	1 cut(s)	679
FbaI	TGATCA	1 cut(s)	640
Fnu4HI	GCNGC	1 cut(s)	459
Fsp4HI	GCNGC	1 cut(s)	459
FspBI	CTAG	3 cut(s)	179, 203, 323
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	1 cut(s)	459
GsuI	CTGGAG	1 cut(s)	309
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	315
HapII	CCGG	1 cut(s)	703
HhaI	GCGC	1 cut(s)	107
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	6 cut(s)	77, 104, 367, 430, 641, 647
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HinfI	GANTC	7 cut(s)	5, 16, 284, 293, 348, 415, 647
HpaII	CCGG	1 cut(s)	703
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	2 cut(s)	27, 602
Hpy188III	TCNNGA	4 cut(s)	179, 288, 551, 644
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	1 cut(s)	460
HpyCH4IV	ACGT	1 cut(s)	508
HpyCH4V	TGCA	2 cut(s)	200, 637
HpyF10VI	GCNNNNNNNGC	1 cut(s)	111
HpyF3I	CTNAG	1 cut(s)	501
HpySE526I	ACGT	1 cut(s)	508
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	6 cut(s)	77, 104, 367, 430, 641, 647
HspAI	GCGC	1 cut(s)	105
KasI	GGCGCC	1 cut(s)	104
KpnI	GGTACC	1 cut(s)	450
Ksp22I	TGATCA	1 cut(s)	640
Kzo9I	GATC	6 cut(s)	124, 139, 151, 173, 514, 640
LmnI	GCTCC	2 cut(s)	236, 586
LpnPI	CCDG	6 cut(s)	273, 365, 425, 447, 460, 564
Lsp1109I	GCAGC	1 cut(s)	445
MaeI	CTAG	3 cut(s)	179, 203, 323
MaeII	ACGT	1 cut(s)	508
MalI	GATC	6 cut(s)	126, 141, 153, 175, 516, 642
MboI	GATC	6 cut(s)	124, 139, 151, 173, 514, 640
MboII	GAAGA	6 cut(s)	25, 69, 394, 491, 642, 695
MflI	RGATCY	2 cut(s)	173, 514
MluCI	AATT	3 cut(s)	96, 308, 399
Mly113I	GGCGCC	1 cut(s)	105
MlyI	GAGTC	2 cut(s)	14, 424
MmeI	TCCRAC	2 cut(s)	5, 229
MnlI	CCTC	3 cut(s)	32, 496, 594
MseI	TTAA	3 cut(s)	134, 441, 576
MslI	CAYNNNNRTG	1 cut(s)	642
MspI	CCGG	1 cut(s)	703
MwoI	GCNNNNNNNGC	1 cut(s)	111
NarI	GGCGCC	1 cut(s)	105
NdeI	CATATG	1 cut(s)	679
NdeII	GATC	6 cut(s)	124, 139, 151, 173, 514, 640
NlaIII	CATG	6 cut(s)	77, 104, 367, 430, 641, 647
NlaIV	GGNNCC	2 cut(s)	106, 448
PagI	TCATGA	1 cut(s)	643
PfeI	GAWTC	5 cut(s)	16, 284, 293, 348, 647
PkrI	GCNGC	1 cut(s)	460
PleI	GAGTC	2 cut(s)	13, 423
PluTI	GGCGCC	1 cut(s)	108
PpsI	GAGTC	2 cut(s)	13, 423
PspN4I	GGNNCC	2 cut(s)	106, 448
PspPI	GGNCC	1 cut(s)	313
PsuI	RGATCY	2 cut(s)	173, 514
RsaI	GTAC	4 cut(s)	356, 423, 448, 596
RsaNI	GTAC	4 cut(s)	355, 422, 447, 595
RseI	CAYNNNNRTG	1 cut(s)	642
SaqAI	TTAA	3 cut(s)	134, 441, 576
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	6 cut(s)	124, 139, 151, 173, 514, 640
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	2 cut(s)	14, 424
SetI	ASST	6 cut(s)	25, 120, 220, 452, 511, 576
SfoI	GGCGCC	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	642
Sse9I	AATT	3 cut(s)	96, 308, 399
SsiI	CCGC	1 cut(s)	512
SspDI	GGCGCC	1 cut(s)	104
SspMI	CTAG	3 cut(s)	179, 203, 323
TaiI	ACGT	1 cut(s)	511
TaqI	TCGA	1 cut(s)	154
TasI	AATT	3 cut(s)	96, 308, 399
TatI	WGTACW	2 cut(s)	354, 594
TfiI	GAWTC	5 cut(s)	16, 284, 293, 348, 647
Tru1I	TTAA	3 cut(s)	134, 441, 576
Tru9I	TTAA	3 cut(s)	134, 441, 576
TseI	GCWGC	1 cut(s)	458
TspDTI	ATGAA	6 cut(s)	89, 395, 442, 642, 696, 702
TspGWI	ACGGA	1 cut(s)	76
XapI	RAATTY	1 cut(s)	96
XbaI	TCTAGA	1 cut(s)	178
XspI	CTAG	3 cut(s)	179, 203, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.