Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Reverse (-)

36018919 .. 36021205

Gene Structure 2287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g35920.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCTACCACTAATCAAACTCAAGTAGGTGGTCCCATAAGCCCTCTCCTTACCCCTTGCAAACTTGGAAACTTCAATCTTTCTCATAGAGTTGTCTTAGCACCAATGGGTAGACAAAGATCGTACGGATATGTTCCTCAGCCGCATGCGATCTTATATTACTCCCAGAGAACATCTAACGGGGGTCTTCTCATAACTGAAGCCACTGGAGTTTCTGACACAGCTCAAGGGTACACAGATACTCCCGGTATATGGACAAAGGAGCAAGTTGAAGCATGGAAACCCATTGTTGATGCTGTTCATGCTAAAGGTGGCATCTTCTTCTGTCAGATTTTGCATGTAGGGAGGGTTTCAAATACCGGATTTCAGCCAAATGGGCAAGTTCCAATCTCTTCTACTGAGAAGCCGATACGATTAAATGGCATTGATGTTTCTGAATTCACGCCTCCAAGACGATTAAGGACGGATGAAATTCCACAAATTGTCAATGATTTTAGACTTGCTGCAAGGAATGCTATGGAAGCTGGCTTTGATGGAGTGGAAATTCATGGGGCCCATGGATACCTTATTGATCGATTTATGAAAGATCAAGTGAATGATCGAACAGACCAATATGGCGGATCTATGGAGAATCGTTGTCGATTTGCTCTGGAAGTTGTTGAAGCTATTGCTAACGAGATAGGAGCCGATAAAGTTGGAATTAGATTATCTCCATTTGCCAACTATATGGAATCAGGGGATTCAGATCCTGAAGCGTTGGGCCTTTATCTGGCCAATTCATTGAACAAGTATGGGATCGTGTACTGCCATATGGTTGAGCCGAGGATGAAGACAATTGGAGAAAAGAGTGATTGCCCCCACAGTCTTGTACCCATGAGAAAGGCTTTTAATGGTACCTTCATTGCTGCTGGTGGTTATGACAAGGAAGAAGGGAACAATGGTGTGGCCGAGGGCCGTGCAGATCTTATTGCTTATGGCCGTTTTTTCTTGGCGAATCCGGATTTACCAAAGAGATTTGAGCTTAATGCTCCTCTAAACAAGTACAACAGAGAGACATTCTACGCGTCTGAACCGCTTATTGGCTACACTGATTATCCGTTCCTTGAAACCACTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

373

Amino Acids

41.08

Weight (kDa)

5.81

Isoelectric Point (pI)

25.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	893
AccB1I	GGYRCC	1 cut(s)	893
AccI	GTMKAC	1 cut(s)	112
AccII	CGCG	1 cut(s)	1064
AccIII	TCCGGA	1 cut(s)	997
AciI	CCGC	3 cut(s)	143, 618, 1073
AclWI	GGATC	3 cut(s)	628, 740, 803
AcoI	YGGCCR	3 cut(s)	771, 945, 976
AcsI	RAATTY	3 cut(s)	437, 471, 543
AcuI	CTGAAG	2 cut(s)	219, 771
AfaI	GTAC	6 cut(s)	125, 233, 803, 870, 895, 1043
AfiI	CCNNNNNNNGG	3 cut(s)	252, 769, 1079
AflIII	ACRYGT	1 cut(s)	1062
AgsI	TTSAA	6 cut(s)	76, 272, 354, 662, 784, 1106
AjuI	GAANNNNNNNTTGG	2 cut(s)	1062, 1094
AluBI	AGCT	4 cut(s)	224, 524, 665, 1021
AluI	AGCT	4 cut(s)	224, 524, 665, 1021
Alw26I	GTCTC	1 cut(s)	1046
AlwI	GGATC	3 cut(s)	628, 740, 803
AlwNI	CAGNNNCTG	1 cut(s)	749
Aor13HI	TCCGGA	1 cut(s)	997
AoxI	GGCC	6 cut(s)	552, 760, 771, 945, 952, 976
ApaI	GGGCCC	1 cut(s)	556
ApeKI	GCWGC	2 cut(s)	503, 905
ApoI	RAATTY	3 cut(s)	437, 471, 543
Asp718I	GGTACC	1 cut(s)	893
AspS9I	GGNCC	5 cut(s)	32, 552, 553, 760, 952
AsuC2I	CCSGG	1 cut(s)	246
AvaII	GGWCC	1 cut(s)	32
BaeGI	GKGCMC	1 cut(s)	556
BalI	TGGCCA	1 cut(s)	773
BanI	GGYRCC	1 cut(s)	893
BanII	GRGCYC	1 cut(s)	556
BbsI	GAAGAC	2 cut(s)	179, 836
BbvCI	CCTCAGC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	490, 892
BccI	CCATC	1 cut(s)	527
BceAI	ACGGC	2 cut(s)	939, 963
BcgI	CGANNNNNNTGC	2 cut(s)	938, 972
BciVI	GTATCC	1 cut(s)	554
BcnI	CCSGG	1 cut(s)	246
BcoDI	GTCTC	1 cut(s)	1046
BfuI	GTATCC	1 cut(s)	554
BglI	GCCNNNNNGGC	1 cut(s)	376
BglII	AGATCT	1 cut(s)	961
BisI	GCNGC	3 cut(s)	143, 504, 906
BlsI	GCNGC	3 cut(s)	144, 505, 907
Bme1390I	CCNGG	1 cut(s)	246
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	5 cut(s)	32, 552, 553, 760, 952
BmiI	GGNNCC	5 cut(s)	34, 553, 554, 685, 895
BmrFI	CCNGG	1 cut(s)	246
BmsI	GCATC	2 cut(s)	283, 324
BpiI	GAAGAC	2 cut(s)	179, 836
BpmI	CTGGAG	1 cut(s)	228
Bpu10I	CCTNAGC	1 cut(s)	138
BpuEI	CTTGAG	2 cut(s)	6, 210
BpuMI	CCSGG	1 cut(s)	246
Bsa29I	ATCGAT	1 cut(s)	574
BsaBI	GATNNNNATC	1 cut(s)	744
BsaJI	CCNNGG	3 cut(s)	556, 821, 948
BsaWI	WCCGGW	2 cut(s)	359, 997
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
Bsc4I	CCNNNNNNNGG	3 cut(s)	252, 769, 1079
Bse1I	ACTGG	1 cut(s)	211
Bse3DI	GCAATG	1 cut(s)	900
Bse8I	GATNNNNATC	1 cut(s)	744
BseAI	TCCGGA	1 cut(s)	997
BseCI	ATCGAT	1 cut(s)	574
BseDI	CCNNGG	3 cut(s)	556, 821, 948
BseGI	GGATG	2 cut(s)	472, 831
BseJI	GATNNNNATC	1 cut(s)	744
BseLI	CCNNNNNNNGG	3 cut(s)	252, 769, 1079
BseMI	GCAATG	1 cut(s)	900
BseMII	CTCAG	2 cut(s)	152, 390
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	1 cut(s)	1020
BseSI	GKGCMC	1 cut(s)	556
BseXI	GCAGC	2 cut(s)	490, 892
BsgI	GTGCAG	1 cut(s)	978
Bsh1236I	CGCG	1 cut(s)	1064
BshFI	GGCC	6 cut(s)	554, 762, 773, 947, 954, 978
BshNI	GGYRCC	1 cut(s)	893
BshVI	ATCGAT	1 cut(s)	574
BsiSI	CCGG	3 cut(s)	246, 360, 998
BsiWI	CGTACG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	3 cut(s)	252, 769, 1079
BsmAI	GTCTC	1 cut(s)	1046
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	517
BsnI	GGCC	6 cut(s)	554, 762, 773, 947, 954, 978
Bsp120I	GGGCCC	1 cut(s)	552
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp13I	TCCGGA	1 cut(s)	997
Bsp143I	GATC	9 cut(s)	119, 150, 571, 586, 598, 620, 745, 795, 961
Bsp19I	CCATGG	1 cut(s)	556
BspACI	CCGC	3 cut(s)	143, 618, 1073
BspANI	GGCC	6 cut(s)	554, 762, 773, 947, 954, 978
BspCNI	CTCAG	2 cut(s)	151, 391
BspDI	ATCGAT	1 cut(s)	574
BspEI	TCCGGA	1 cut(s)	997
BspFNI	CGCG	1 cut(s)	1064
BspLI	GGNNCC	5 cut(s)	34, 553, 554, 685, 895
BspPI	GGATC	3 cut(s)	628, 740, 803
BspT107I	GGYRCC	1 cut(s)	893
BsrDI	GCAATG	1 cut(s)	900
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	3 cut(s)	556, 821, 948
BssMI	GATC	9 cut(s)	119, 150, 571, 586, 598, 620, 745, 795, 961
BssT1I	CCWWGG	1 cut(s)	556
Bst4CI	ACNGT	1 cut(s)	863
Bst6I	CTCTTC	1 cut(s)	397
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstC8I	GCNNGC	2 cut(s)	147, 526
BstDEI	CTNAG	4 cut(s)	97, 138, 399, 1116
BstDSI	CCRYGG	1 cut(s)	556
BstF5I	GGATG	2 cut(s)	472, 831
BstFNI	CGCG	1 cut(s)	1064
BstKTI	GATC	9 cut(s)	122, 153, 574, 589, 601, 623, 748, 798, 964
BstMAI	GTCTC	1 cut(s)	1046
BstMBI	GATC	9 cut(s)	119, 150, 571, 586, 598, 620, 745, 795, 961
BstMWI	GCNNNNNNNGC	4 cut(s)	302, 376, 512, 521
BstNSI	RCATGY	2 cut(s)	149, 341
BstSCI	CCNGG	1 cut(s)	244
BstSLI	GKGCMC	1 cut(s)	556
BstUI	CGCG	1 cut(s)	1064
BstV1I	GCAGC	2 cut(s)	490, 892
BstV2I	GAAGAC	2 cut(s)	179, 836
BstX2I	RGATCY	3 cut(s)	620, 745, 961
BstXI	CCANNNNNNTGG	1 cut(s)	727
BstYI	RGATCY	3 cut(s)	620, 745, 961
Bsu15I	ATCGAT	1 cut(s)	574
BsuI	GTATCC	1 cut(s)	554
BsuRI	GGCC	6 cut(s)	554, 762, 773, 947, 954, 978
BsuTUI	ATCGAT	1 cut(s)	574
BtgI	CCRYGG	1 cut(s)	556
BtsCI	GGATG	2 cut(s)	472, 831
BtsIMutI	CAGTG	2 cut(s)	204, 1086
Cac8I	GCNNGC	2 cut(s)	147, 526
CaiI	CAGNNNCTG	1 cut(s)	749
Cfr13I	GGNCC	5 cut(s)	32, 552, 553, 760, 952
ClaI	ATCGAT	1 cut(s)	574
CseI	GACGC	1 cut(s)	1053
Csp6I	GTAC	6 cut(s)	124, 232, 802, 869, 894, 1042
CviAII	CATG	7 cut(s)	146, 276, 302, 338, 548, 557, 874
CviQI	GTAC	6 cut(s)	124, 232, 802, 869, 894, 1042
DdeI	CTNAG	4 cut(s)	97, 138, 399, 1116
DpnI	GATC	9 cut(s)	121, 152, 573, 588, 600, 622, 747, 797, 963
DpnII	GATC	9 cut(s)	119, 150, 571, 586, 598, 620, 745, 795, 961
EaeI	YGGCCR	3 cut(s)	771, 945, 976
Eam1104I	CTCTTC	1 cut(s)	397
EarI	CTCTTC	1 cut(s)	397
EciI	GGCGGA	1 cut(s)	633
Eco130I	CCWWGG	1 cut(s)	556
Eco24I	GRGCYC	1 cut(s)	556
Eco47I	GGWCC	1 cut(s)	32
Eco57I	CTGAAG	2 cut(s)	219, 771
EcoO109I	RGGNCCY	1 cut(s)	552
EcoRI	GAATTC	1 cut(s)	437
EcoT14I	CCWWGG	1 cut(s)	556
EcoT38I	GRGCYC	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	556
FaeI	CATG	7 cut(s)	149, 279, 305, 341, 551, 560, 877
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	7 cut(s)	145, 275, 301, 337, 547, 556, 873
FauNDI	CATATG	1 cut(s)	810
FblI	GTMKAC	1 cut(s)	112
Fnu4HI	GCNGC	3 cut(s)	143, 504, 906
FokI	GGATG	2 cut(s)	479, 838
FriOI	GRGCYC	1 cut(s)	556
Fsp4HI	GCNGC	3 cut(s)	143, 504, 906
GluI	GCNGC	3 cut(s)	143, 504, 906
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	6 cut(s)	554, 762, 773, 947, 954, 978
HapII	CCGG	3 cut(s)	246, 360, 998
HgaI	GACGC	1 cut(s)	1053
Hin1II	CATG	7 cut(s)	149, 279, 305, 341, 551, 560, 877
HinfI	GANTC	4 cut(s)	631, 731, 740, 994
HpaII	CCGG	3 cut(s)	246, 360, 998
Hpy166II	GTNNAC	3 cut(s)	113, 234, 802
Hpy188I	TCNGA	5 cut(s)	217, 330, 436, 745, 1069
Hpy188III	TCNNGA	3 cut(s)	650, 749, 998
Hpy8I	GTNNAC	3 cut(s)	113, 234, 802
HpyAV	CCTTC	2 cut(s)	907, 923
HpyCH4III	ACNGT	1 cut(s)	863
HpyCH4V	TGCA	4 cut(s)	60, 337, 506, 959
HpyF10VI	GCNNNNNNNGC	4 cut(s)	302, 376, 512, 521
HpyF3I	CTNAG	4 cut(s)	97, 138, 399, 1116
Hsp92II	CATG	7 cut(s)	149, 279, 305, 341, 551, 560, 877
Kpn2I	TCCGGA	1 cut(s)	997
KpnI	GGTACC	1 cut(s)	897
Kzo9I	GATC	9 cut(s)	119, 150, 571, 586, 598, 620, 745, 795, 961
LmnI	GCTCC	3 cut(s)	262, 683, 1033
Lsp1109I	GCAGC	2 cut(s)	490, 892
LweI	GCATC	2 cut(s)	283, 324
MalI	GATC	9 cut(s)	121, 152, 573, 588, 600, 622, 747, 797, 963
MboI	GATC	9 cut(s)	119, 150, 571, 586, 598, 620, 745, 795, 961
MboII	GAAGA	6 cut(s)	179, 310, 313, 384, 841, 938
MfeI	CAATTG	1 cut(s)	834
MflI	RGATCY	3 cut(s)	620, 745, 961
MhlI	GDGCHC	1 cut(s)	556
MlsI	TGGCCA	1 cut(s)	773
MluCI	AATT	7 cut(s)	437, 471, 480, 543, 699, 775, 834
MluI	ACGCGT	1 cut(s)	1062
MluNI	TGGCCA	1 cut(s)	773
MmeI	TCCRAC	1 cut(s)	676
MnlI	CCTC	7 cut(s)	54, 147, 339, 456, 816, 943, 1041
Mox20I	TGGCCA	1 cut(s)	773
MroI	TCCGGA	1 cut(s)	997
MscI	TGGCCA	1 cut(s)	773
MseI	TTAA	4 cut(s)	416, 458, 888, 1023
Msp20I	TGGCCA	1 cut(s)	773
MspI	CCGG	3 cut(s)	246, 360, 998
MspR9I	CCNGG	1 cut(s)	246
MunI	CAATTG	1 cut(s)	834
Mva1269I	GAATGC	1 cut(s)	517
MvnI	CGCG	1 cut(s)	1064
MwoI	GCNNNNNNNGC	4 cut(s)	302, 376, 512, 521
NciI	CCSGG	1 cut(s)	246
NcoI	CCATGG	1 cut(s)	556
NdeI	CATATG	1 cut(s)	810
NdeII	GATC	9 cut(s)	119, 150, 571, 586, 598, 620, 745, 795, 961
NlaIII	CATG	7 cut(s)	149, 279, 305, 341, 551, 560, 877
NlaIV	GGNNCC	5 cut(s)	34, 553, 554, 685, 895
NmeAIII	GCCGAG	2 cut(s)	846, 973
NspI	RCATGY	2 cut(s)	149, 341
PaeI	GCATGC	1 cut(s)	149
PctI	GAATGC	1 cut(s)	517
PfeI	GAWTC	4 cut(s)	631, 731, 740, 994
Pfl23II	CGTACG	1 cut(s)	123
PkrI	GCNGC	3 cut(s)	144, 505, 907
PspLI	CGTACG	1 cut(s)	123
PspN4I	GGNNCC	5 cut(s)	34, 553, 554, 685, 895
PspOMI	GGGCCC	1 cut(s)	552
PspPI	GGNCC	5 cut(s)	32, 552, 553, 760, 952
PstNI	CAGNNNCTG	1 cut(s)	749
PsuI	RGATCY	3 cut(s)	620, 745, 961
RsaI	GTAC	6 cut(s)	125, 233, 803, 870, 895, 1043
RsaNI	GTAC	6 cut(s)	124, 232, 802, 869, 894, 1042
SaqAI	TTAA	4 cut(s)	416, 458, 888, 1023
SatI	GCNGC	3 cut(s)	143, 504, 906
Sau3AI	GATC	9 cut(s)	119, 150, 571, 586, 598, 620, 745, 795, 961
Sau96I	GGNCC	5 cut(s)	32, 552, 553, 760, 952
ScrFI	CCNGG	1 cut(s)	246
SduI	GDGCHC	1 cut(s)	556
SetI	ASST	8 cut(s)	31, 226, 313, 526, 567, 667, 899, 1023
SfaNI	GCATC	2 cut(s)	283, 324
SinI	GGWCC	1 cut(s)	32
SmlI	CTYRAG	2 cut(s)	21, 225
SmoI	CTYRAG	2 cut(s)	21, 225
SphI	GCATGC	1 cut(s)	149
Sse9I	AATT	7 cut(s)	437, 471, 480, 543, 699, 775, 834
SsiI	CCGC	3 cut(s)	143, 618, 1073
StyD4I	CCNGG	1 cut(s)	244
StyI	CCWWGG	1 cut(s)	556
TaaI	ACNGT	1 cut(s)	863
TaqI	TCGA	3 cut(s)	574, 601, 640
TasI	AATT	7 cut(s)	437, 471, 480, 543, 699, 775, 834
TatI	WGTACW	2 cut(s)	801, 1041
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	4 cut(s)	631, 731, 740, 994
Tru1I	TTAA	4 cut(s)	416, 458, 888, 1023
Tru9I	TTAA	4 cut(s)	416, 458, 888, 1023
TscAI	CASTG	2 cut(s)	211, 1093
TseI	GCWGC	2 cut(s)	503, 905
TspDTI	ATGAA	7 cut(s)	290, 483, 536, 596, 768, 842, 889
TspGWI	ACGGA	3 cut(s)	141, 479, 1086
TspRI	CASTG	2 cut(s)	211, 1093
VpaK11BI	GGWCC	1 cut(s)	32
XapI	RAATTY	3 cut(s)	437, 471, 543
XceI	RCATGY	2 cut(s)	149, 341
XmiI	GTMKAC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.