Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Reverse (-)

15099555 .. 15103562

Gene Structure 4008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00230270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCTAACCAAGCTCCCACACTTCCTCTTCTTACTCCTTACAAGTTGGGAACGTTTGATCTTTCTCACAGAGTTGTTTTAGCGCCATTGACTAGACAGAGATCATATGGAAATGTTCCCCAGCCACATGCCATCTTATATTACTCTCAGAGAACATCTAAAGGAGGTCTTCTCATAGCTGAAGCCACTGGAGTTTCTGACACAGCACAAGGGTATCCAGATACTCCTGGTATATGGACAAAGGAGCAAGTTGAAGCATGGAAACCCATTGTCAATGCTGTACATGCTAAAGGGGGTATCTTCATCTGTCAGATTTGGCATGTGGGGAGGCTTTCAAATACTGGCTTTCAGCCAAATGGGCAAGCCCCAATCTCTTCTACTGACAAGCCCCTAACGCCCCAAATACGAGCTAATGGCGTTGATGTTGCCCAGTTCACCCCTCCAAGACGATTAAGGACAGATGAAATTCCTCAAATTGTCAATGATTTTAGACTTGCTGCAAGGAATGCTATGGAAGCTGGCTTTGATGGGGTTGAAATTCATGGCGCCCATGGCTACCTTATCGATCAATTTTTAAAAGATCAAGTAAATGATCGAACAGACCAATATGGTGGATCTCTAGAAAAACGTTGCCGATTTGCACTAGACATTGTTGAAGCTGTTGTCAACGAGATAGGAGCAGATAAAGTTGGAATTAGATTATCTCCATTTGCCGACTATATGGAATCCGGAGATTCTAATCCAAAGGAATTGGGCCTCTATCTAGCCAATTCCTTGAACAAATATGGAATCCTGTACTGCCACATGTTTGAGCCAAGAGTGGACACAGTTGGGGAAAAAATTGGATGTTCCCAGAGTCTTGTACCCATGAGAAAGGCTTTTAATGGTACCTTCATTGCTACTGGTGGTTTTGACAGGGAAGATGGGAACAATGCTGTGGCTGAGGGCCGTGCCGATCTTATTGCTTTTGGTCGTTGGTTCTTGGCTAATCCAGATTTGCCAAAGAGATTTGAGCTTAATGCTCCTCTAAATAAGTACAACAGAGATACATTCTACACATCTGATCCGGTTCTTGGTTACATTGATTATCCATTTCTTGACAGCACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

370

Amino Acids

40.89

Weight (kDa)

6.01

Isoelectric Point (pI)

28.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	10 - 343	1.3e-84	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	887
AccB1I	GGYRCC	2 cut(s)	545, 887
AccIII	TCCGGA	1 cut(s)	728
AclI	AACGTT	2 cut(s)	53, 628
AclWI	GGATC	2 cut(s)	622, 1058
AcsI	RAATTY	2 cut(s)	465, 537
AcuI	CTGAAG	1 cut(s)	201
AcyI	GRCGYC	1 cut(s)	546
AfaI	GTAC	5 cut(s)	282, 797, 864, 889, 1037
AfiI	CCNNNNNNNGG	1 cut(s)	1073
AflIII	ACRYGT	1 cut(s)	804
AgsI	TTSAA	5 cut(s)	254, 336, 536, 656, 778
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	6 cut(s)	14, 179, 410, 518, 659, 1015
AluI	AGCT	6 cut(s)	14, 179, 410, 518, 659, 1015
AlwI	GGATC	2 cut(s)	622, 1058
Aor13HI	TCCGGA	1 cut(s)	728
AoxI	GGCC	2 cut(s)	754, 946
ApeKI	GCWGC	1 cut(s)	497
ApoI	RAATTY	2 cut(s)	465, 537
Asp718I	GGTACC	1 cut(s)	887
AspLEI	GCGC	2 cut(s)	85, 548
AspS9I	GGNCC	2 cut(s)	754, 946
AsuHPI	GGTGA	1 cut(s)	427
BaeI	ACNNNNGTAYC	2 cut(s)	197, 230
BanI	GGYRCC	2 cut(s)	545, 887
BbsI	GAAGAC	1 cut(s)	161
BbvCI	CCTCAGC	1 cut(s)	942
BbvI	GCAGC	1 cut(s)	484
BccI	CCATC	3 cut(s)	140, 521, 917
BceAI	ACGGC	1 cut(s)	933
BcgI	CGANNNNNNTGC	2 cut(s)	944, 978
BciT130I	CCWGG	1 cut(s)	228
BciVI	GTATCC	1 cut(s)	225
BfaI	CTAG	4 cut(s)	93, 620, 644, 764
BfoI	RGCGCY	2 cut(s)	86, 549
BfuI	GTATCC	1 cut(s)	225
BglI	GCCNNNNNGGC	1 cut(s)	358
BisI	GCNGC	1 cut(s)	498
BlsI	GCNGC	1 cut(s)	499
Bme1390I	CCNGG	1 cut(s)	228
BmgT120I	GGNCC	2 cut(s)	754, 946
BmiI	GGNNCC	2 cut(s)	547, 889
BmrFI	CCNGG	1 cut(s)	228
BmrI	ACTGGG	1 cut(s)	424
BmuI	ACTGGG	1 cut(s)	424
BpiI	GAAGAC	1 cut(s)	161
BplI	GAGNNNNNCTC	2 cut(s)	156, 188
BpmI	CTGGAG	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	942
Bsa29I	ATCGAT	1 cut(s)	564
BsaBI	GATNNNNATC	1 cut(s)	738
BsaHI	GRCGYC	1 cut(s)	546
BsaJI	CCNNGG	1 cut(s)	550
BsaWI	WCCGGW	2 cut(s)	728, 1066
Bsc4I	CCNNNNNNNGG	1 cut(s)	1073
Bse1I	ACTGG	4 cut(s)	193, 346, 430, 907
Bse3DI	GCAATG	1 cut(s)	894
Bse8I	GATNNNNATC	1 cut(s)	738
BseAI	TCCGGA	1 cut(s)	728
BseBI	CCWGG	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	564
BseDI	CCNNGG	1 cut(s)	550
BseGI	GGATG	1 cut(s)	851
BseJI	GATNNNNATC	1 cut(s)	738
BseLI	CCNNNNNNNGG	1 cut(s)	1073
BseMI	GCAATG	1 cut(s)	894
BseMII	CTCAG	2 cut(s)	161, 933
BseNI	ACTGG	4 cut(s)	193, 346, 430, 907
BseRI	GAGGAG	1 cut(s)	1014
BseXI	GCAGC	1 cut(s)	484
BseYI	CCCAGC	1 cut(s)	120
BshFI	GGCC	2 cut(s)	756, 948
BshNI	GGYRCC	2 cut(s)	545, 887
BshVI	ATCGAT	1 cut(s)	564
BsiSI	CCGG	2 cut(s)	729, 1067
BslI	CCNNNNNNNGG	1 cut(s)	1073
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	2 cut(s)	756, 948
Bsp13I	TCCGGA	1 cut(s)	728
Bsp1407I	TGTACA	1 cut(s)	280
Bsp143I	GATC	8 cut(s)	58, 101, 565, 580, 592, 614, 955, 1063
Bsp19I	CCATGG	1 cut(s)	550
BspANI	GGCC	2 cut(s)	756, 948
BspCNI	CTCAG	2 cut(s)	160, 934
BspDI	ATCGAT	1 cut(s)	564
BspEI	TCCGGA	1 cut(s)	728
BspLI	GGNNCC	2 cut(s)	547, 889
BspPI	GGATC	2 cut(s)	622, 1058
BspT107I	GGYRCC	2 cut(s)	545, 887
BsrDI	GCAATG	1 cut(s)	894
BsrGI	TGTACA	1 cut(s)	280
BsrI	ACTGG	4 cut(s)	193, 346, 430, 907
BssECI	CCNNGG	1 cut(s)	550
BssMI	GATC	8 cut(s)	58, 101, 565, 580, 592, 614, 955, 1063
BssNI	GRCGYC	1 cut(s)	546
BssT1I	CCWWGG	1 cut(s)	550
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	829
Bst6I	CTCTTC	2 cut(s)	33, 379
BstACI	GRCGYC	1 cut(s)	546
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstAUI	TGTACA	1 cut(s)	280
BstC8I	GCNNGC	2 cut(s)	363, 520
BstDEI	CTNAG	2 cut(s)	147, 942
BstDSI	CCRYGG	1 cut(s)	550
BstF5I	GGATG	1 cut(s)	851
BstH2I	RGCGCY	2 cut(s)	86, 549
BstHHI	GCGC	2 cut(s)	85, 548
BstKTI	GATC	8 cut(s)	61, 104, 568, 583, 595, 617, 958, 1066
BstMBI	GATC	8 cut(s)	58, 101, 565, 580, 592, 614, 955, 1063
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 284, 358, 394, 506, 515, 552
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	4 cut(s)	131, 287, 323, 808
BstSCI	CCNGG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	484
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	614
BstXI	CCANNNNNNTGG	1 cut(s)	611
BstYI	RGATCY	1 cut(s)	614
Bsu15I	ATCGAT	1 cut(s)	564
BsuI	GTATCC	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	756, 948
BsuTUI	ATCGAT	1 cut(s)	564
BtgI	CCRYGG	1 cut(s)	550
BtsCI	GGATG	1 cut(s)	851
BtsI	GCAGTG	1 cut(s)	1104
BtsIMutI	CAGTG	2 cut(s)	186, 1104
Cac8I	GCNNGC	2 cut(s)	363, 520
CfoI	GCGC	2 cut(s)	85, 548
Cfr13I	GGNCC	2 cut(s)	754, 946
ClaI	ATCGAT	1 cut(s)	564
Csp6I	GTAC	5 cut(s)	281, 796, 863, 888, 1036
CviAII	CATG	8 cut(s)	128, 258, 284, 320, 542, 551, 805, 868
CviQI	GTAC	5 cut(s)	281, 796, 863, 888, 1036
DdeI	CTNAG	2 cut(s)	147, 942
DinI	GGCGCC	1 cut(s)	547
DpnI	GATC	8 cut(s)	60, 103, 567, 582, 594, 616, 957, 1065
DpnII	GATC	8 cut(s)	58, 101, 565, 580, 592, 614, 955, 1063
DraI	TTTAAA	1 cut(s)	576
Eam1104I	CTCTTC	2 cut(s)	33, 379
EarI	CTCTTC	2 cut(s)	33, 379
Eco130I	CCWWGG	1 cut(s)	550
Eco57I	CTGAAG	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	550
EgeI	GGCGCC	1 cut(s)	547
EheI	GGCGCC	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	550
FaeI	CATG	8 cut(s)	131, 261, 287, 323, 545, 554, 808, 871
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FatI	CATG	8 cut(s)	127, 257, 283, 319, 541, 550, 804, 867
FauNDI	CATATG	1 cut(s)	106
Fnu4HI	GCNGC	1 cut(s)	498
FokI	GGATG	1 cut(s)	858
Fsp4HI	GCNGC	1 cut(s)	498
FspBI	CTAG	4 cut(s)	93, 620, 644, 764
GlaI	GCGC	2 cut(s)	84, 547
GluI	GCNGC	1 cut(s)	498
GsaI	CCCAGC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	210
HaeII	RGCGCY	2 cut(s)	86, 549
HaeIII	GGCC	2 cut(s)	756, 948
HapII	CCGG	2 cut(s)	729, 1067
HhaI	GCGC	2 cut(s)	85, 548
Hin1I	GRCGYC	1 cut(s)	546
Hin1II	CATG	8 cut(s)	131, 261, 287, 323, 545, 554, 808, 871
Hin6I	GCGC	2 cut(s)	83, 546
HinP1I	GCGC	2 cut(s)	83, 546
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HinfI	GANTC	4 cut(s)	725, 734, 789, 856
HpaII	CCGG	2 cut(s)	729, 1067
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	3 cut(s)	435, 667, 823
Hpy188I	TCNGA	4 cut(s)	150, 199, 312, 1063
Hpy188III	TCNNGA	5 cut(s)	218, 620, 729, 992, 1097
Hpy8I	GTNNAC	3 cut(s)	435, 667, 823
HpyAV	CCTTC	1 cut(s)	901
HpyCH4III	ACNGT	1 cut(s)	829
HpyCH4IV	ACGT	2 cut(s)	53, 628
HpyCH4V	TGCA	2 cut(s)	500, 641
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 284, 358, 394, 506, 515, 552
HpyF3I	CTNAG	2 cut(s)	147, 942
HpySE526I	ACGT	2 cut(s)	53, 628
Hsp92I	GRCGYC	1 cut(s)	546
Hsp92II	CATG	8 cut(s)	131, 261, 287, 323, 545, 554, 808, 871
HspAI	GCGC	2 cut(s)	83, 546
KasI	GGCGCC	1 cut(s)	545
Kpn2I	TCCGGA	1 cut(s)	728
KpnI	GGTACC	1 cut(s)	891
Kzo9I	GATC	8 cut(s)	58, 101, 565, 580, 592, 614, 955, 1063
LmnI	GCTCC	4 cut(s)	19, 244, 677, 1027
Lsp1109I	GCAGC	1 cut(s)	484
MaeI	CTAG	4 cut(s)	93, 620, 644, 764
MaeII	ACGT	2 cut(s)	53, 628
MaeIII	GTNAC	1 cut(s)	1076
MalI	GATC	8 cut(s)	60, 103, 567, 582, 594, 616, 957, 1065
MboI	GATC	8 cut(s)	58, 101, 565, 580, 592, 614, 955, 1063
MboII	GAAGA	5 cut(s)	20, 161, 292, 366, 932
MflI	RGATCY	1 cut(s)	614
MluCI	AATT	8 cut(s)	465, 474, 537, 569, 693, 749, 769, 840
Mly113I	GGCGCC	1 cut(s)	546
MlyI	GAGTC	1 cut(s)	865
MmeI	TCCRAC	1 cut(s)	670
MnlI	CCTC	8 cut(s)	36, 158, 321, 450, 480, 767, 937, 1035
MroI	TCCGGA	1 cut(s)	728
MseI	TTAA	4 cut(s)	452, 575, 882, 1017
MspI	CCGG	2 cut(s)	729, 1067
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	7 cut(s)	11, 284, 358, 394, 506, 515, 552
NarI	GGCGCC	1 cut(s)	546
NcoI	CCATGG	1 cut(s)	550
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	8 cut(s)	58, 101, 565, 580, 592, 614, 955, 1063
NlaIII	CATG	8 cut(s)	131, 261, 287, 323, 545, 554, 808, 871
NlaIV	GGNNCC	2 cut(s)	547, 889
NspI	RCATGY	4 cut(s)	131, 287, 323, 808
PciI	ACATGT	1 cut(s)	804
PctI	GAATGC	1 cut(s)	511
PfeI	GAWTC	3 cut(s)	725, 734, 789
PkrI	GCNGC	1 cut(s)	499
PleI	GAGTC	1 cut(s)	864
PluTI	GGCGCC	1 cut(s)	549
PpsI	GAGTC	1 cut(s)	864
PscI	ACATGT	1 cut(s)	804
Psp1406I	AACGTT	2 cut(s)	53, 628
Psp6I	CCWGG	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	547, 889
PspPI	GGNCC	2 cut(s)	754, 946
PsuI	RGATCY	1 cut(s)	614
RsaI	GTAC	5 cut(s)	282, 797, 864, 889, 1037
RsaNI	GTAC	5 cut(s)	281, 796, 863, 888, 1036
SaqAI	TTAA	4 cut(s)	452, 575, 882, 1017
SatI	GCNGC	1 cut(s)	498
Sau3AI	GATC	8 cut(s)	58, 101, 565, 580, 592, 614, 955, 1063
Sau96I	GGNCC	2 cut(s)	754, 946
SchI	GAGTC	1 cut(s)	865
ScrFI	CCNGG	1 cut(s)	228
SfoI	GGCGCC	1 cut(s)	547
Sse9I	AATT	8 cut(s)	465, 474, 537, 569, 693, 749, 769, 840
SspDI	GGCGCC	1 cut(s)	545
SspMI	CTAG	4 cut(s)	93, 620, 644, 764
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	550
TaaI	ACNGT	1 cut(s)	829
TaiI	ACGT	2 cut(s)	56, 631
TaqI	TCGA	2 cut(s)	564, 595
TasI	AATT	8 cut(s)	465, 474, 537, 569, 693, 749, 769, 840
TatI	WGTACW	3 cut(s)	280, 795, 1035
TfiI	GAWTC	3 cut(s)	725, 734, 789
Tru1I	TTAA	4 cut(s)	452, 575, 882, 1017
Tru9I	TTAA	4 cut(s)	452, 575, 882, 1017
TscAI	CASTG	2 cut(s)	193, 1111
TseI	GCWGC	1 cut(s)	497
TspDTI	ATGAA	4 cut(s)	292, 477, 530, 883
TspRI	CASTG	2 cut(s)	193, 1111
XapI	RAATTY	2 cut(s)	465, 537
XbaI	TCTAGA	1 cut(s)	619
XceI	RCATGY	4 cut(s)	131, 287, 323, 808
XspI	CTAG	4 cut(s)	93, 620, 644, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.