Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Reverse (-)

16523533 .. 16526384

Gene Structure 2852 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001503

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAGATGATAATCTGGAACCTTCATTGGCTGGTTTTAGTTGTTTTAGCGCCATTGACTAGACAGCGATCATATGGAAATGTTCCCCAGCCACATGCCATCTTATATTACTCTCAGAGAACATCTAAAGGAGGTCTTCTCATAACTGAAGCCACTGGAGTTTCTGACACAGCACAAGGGTATCCAGATACTCCTGGTATATGGACAAAGGAGCAAGTTGAAGCATGGAAACCCATTGTCAATGCTGTACATGCTAAAGGGGGTATCTTCTTCTGTCAGATTTGGCATGTGGGGAGGGTTTCAAATACTGGCTTTCAGCCAAATGGGCAGGTTCCAATCTCTTCTACTGACAAGCCCCTAACCCCCCAAATACGATCTAATGGCATTGATGTTGCGCAATTCACACCTCCAAGACGATTAAGGACAGATGAAATTCCTCAAATTGTCAATGATTTTAGACTTGCTGCAAGGAATGCTATGGAAGCTGGCTTTGATGGGGTTGAAATTCATGGCGCCCATGGCTACCTTATCGATCAGTTTTTAAAAGATCAAGTAAATGATCGAACAGACCAATATGGTGGATCTCTAGAAAAGCGTTGCCGATTTGCACTGGACATTGTTGAAGCTGTTGTCAATGAGATAGGAGCAGATAAAGTTGGAATTAGATTATCTCCATTTGCTGACTATATGGAATCAGGAGATTCTAATCCAAAGGAATTGGGCCTTTATCTAGTCAATTCCTTGAACAAATATCGAATCCTGTACTGCCACATGGTTGAGCCAAGAATGAAGACACTTGGAGAAAAAAGTGAGTGTCCCCAAAGTCTCGTACCCATGAGAAAGGCTTTCAATGGTACCTTCATTGCTGCTGGTGGTTTTGACAGGAAAGATGGGAACAATGCTGTGGCTGAGGGCCGTGCAGATCTTATCGCTTTTGGTCGTTGGTTCTTGGCTAATCCAGATTTGCCAAAGAGATTTGAGCTTAATGCTCCTCTAAATAAGTACAACAGAGATACATTCTACATATCTGATCCGGTTCTTGGTTACACTGATTATCCATTTCTTGACAGCACCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

360

Amino Acids

40.17

Weight (kDa)

6.4

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	14 - 332	1.7e-80	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	396
Acc36I	ACCTGC	1 cut(s)	319
Acc65I	GGTACC	1 cut(s)	854
AccB1I	GGYRCC	2 cut(s)	512, 854
AciI	CCGC	1 cut(s)	1074
AclWI	GGATC	2 cut(s)	589, 1025
AcsI	RAATTY	2 cut(s)	432, 504
AcuI	CTGAAG	1 cut(s)	168
AcyI	GRCGYC	1 cut(s)	513
AfaI	GTAC	5 cut(s)	249, 764, 831, 856, 1004
AfiI	CCNNNNNNNGG	1 cut(s)	1040
AgsI	TTSAA	6 cut(s)	221, 303, 503, 623, 745, 850
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	3 cut(s)	485, 626, 982
AluI	AGCT	3 cut(s)	485, 626, 982
Alw26I	GTCTC	1 cut(s)	830
AlwI	GGATC	2 cut(s)	589, 1025
AoxI	GGCC	2 cut(s)	721, 913
ApeKI	GCWGC	2 cut(s)	464, 866
ApoI	RAATTY	2 cut(s)	432, 504
Asp718I	GGTACC	1 cut(s)	854
AspLEI	GCGC	3 cut(s)	52, 397, 515
AspS9I	GGNCC	2 cut(s)	721, 913
BaeI	ACNNNNGTAYC	2 cut(s)	164, 197
BanI	GGYRCC	2 cut(s)	512, 854
BbsI	GAAGAC	2 cut(s)	128, 797
BbvCI	CCTCAGC	1 cut(s)	909
BbvI	GCAGC	2 cut(s)	451, 853
BccI	CCATC	3 cut(s)	107, 488, 884
BceAI	ACGGC	1 cut(s)	900
BciT130I	CCWGG	1 cut(s)	195
BciVI	GTATCC	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	830
BfaI	CTAG	3 cut(s)	60, 587, 731
BfoI	RGCGCY	2 cut(s)	53, 516
BfuAI	ACCTGC	1 cut(s)	319
BfuI	GTATCC	1 cut(s)	192
BglI	GCCNNNNNGGC	1 cut(s)	325
BglII	AGATCT	1 cut(s)	922
BisI	GCNGC	2 cut(s)	465, 867
BlsI	GCNGC	2 cut(s)	466, 868
Bme1390I	CCNGG	1 cut(s)	195
BmgT120I	GGNCC	2 cut(s)	721, 913
BmiI	GGNNCC	4 cut(s)	20, 333, 514, 856
BmrFI	CCNGG	1 cut(s)	195
BpiI	GAAGAC	2 cut(s)	128, 797
BplI	GAGNNNNNCTC	2 cut(s)	123, 155
BpmI	CTGGAG	1 cut(s)	177
Bpu10I	CCTNAGC	1 cut(s)	909
Bsa29I	ATCGAT	1 cut(s)	531
BsaBI	GATNNNNATC	2 cut(s)	11, 705
BsaHI	GRCGYC	1 cut(s)	513
BsaJI	CCNNGG	1 cut(s)	517
BsaWI	WCCGGW	1 cut(s)	1033
Bsc4I	CCNNNNNNNGG	1 cut(s)	1040
Bse1I	ACTGG	3 cut(s)	160, 313, 615
Bse3DI	GCAATG	1 cut(s)	861
Bse8I	GATNNNNATC	2 cut(s)	11, 705
BseBI	CCWGG	1 cut(s)	195
BseCI	ATCGAT	1 cut(s)	531
BseDI	CCNNGG	1 cut(s)	517
BseJI	GATNNNNATC	2 cut(s)	11, 705
BseLI	CCNNNNNNNGG	1 cut(s)	1040
BseMI	GCAATG	1 cut(s)	861
BseMII	CTCAG	2 cut(s)	128, 900
BseNI	ACTGG	3 cut(s)	160, 313, 615
BseRI	GAGGAG	1 cut(s)	981
BseXI	GCAGC	2 cut(s)	451, 853
BseYI	CCCAGC	1 cut(s)	87
BsgI	GTGCAG	1 cut(s)	939
BshFI	GGCC	2 cut(s)	723, 915
BshNI	GGYRCC	2 cut(s)	512, 854
BshVI	ATCGAT	1 cut(s)	531
BsiSI	CCGG	1 cut(s)	1034
BslFI	GGGAC	1 cut(s)	801
BslI	CCNNNNNNNGG	1 cut(s)	1040
BsmAI	GTCTC	1 cut(s)	830
BsmFI	GGGAC	1 cut(s)	801
BsmI	GAATGC	1 cut(s)	478
BsnI	GGCC	2 cut(s)	723, 915
Bsp1407I	TGTACA	1 cut(s)	247
Bsp143I	GATC	8 cut(s)	68, 374, 532, 547, 559, 581, 922, 1030
Bsp19I	CCATGG	1 cut(s)	517
BspACI	CCGC	1 cut(s)	1074
BspANI	GGCC	2 cut(s)	723, 915
BspCNI	CTCAG	2 cut(s)	127, 901
BspDI	ATCGAT	1 cut(s)	531
BspLI	GGNNCC	4 cut(s)	20, 333, 514, 856
BspMI	ACCTGC	1 cut(s)	319
BspPI	GGATC	2 cut(s)	589, 1025
BspT107I	GGYRCC	2 cut(s)	512, 854
BsrDI	GCAATG	1 cut(s)	861
BsrGI	TGTACA	1 cut(s)	247
BsrI	ACTGG	3 cut(s)	160, 313, 615
BssECI	CCNNGG	1 cut(s)	517
BssMI	GATC	8 cut(s)	68, 374, 532, 547, 559, 581, 922, 1030
BssNI	GRCGYC	1 cut(s)	513
BssT1I	CCWWGG	1 cut(s)	517
Bst2UI	CCWGG	1 cut(s)	195
Bst6I	CTCTTC	1 cut(s)	346
BstACI	GRCGYC	1 cut(s)	513
BstAPI	GCANNNNNTGC	1 cut(s)	473
BstAUI	TGTACA	1 cut(s)	247
BstC8I	GCNNGC	1 cut(s)	487
BstDEI	CTNAG	2 cut(s)	114, 909
BstDSI	CCRYGG	1 cut(s)	517
BstH2I	RGCGCY	2 cut(s)	53, 516
BstHHI	GCGC	3 cut(s)	52, 397, 515
BstKTI	GATC	8 cut(s)	71, 377, 535, 550, 562, 584, 925, 1033
BstMAI	GTCTC	1 cut(s)	830
BstMBI	GATC	8 cut(s)	68, 374, 532, 547, 559, 581, 922, 1030
BstMWI	GCNNNNNNNGC	5 cut(s)	251, 325, 473, 482, 519
BstNI	CCWGG	1 cut(s)	195
BstNSI	RCATGY	3 cut(s)	98, 254, 290
BstSCI	CCNGG	1 cut(s)	193
BstV1I	GCAGC	2 cut(s)	451, 853
BstV2I	GAAGAC	2 cut(s)	128, 797
BstX2I	RGATCY	2 cut(s)	581, 922
BstXI	CCANNNNNNTGG	1 cut(s)	578
BstYI	RGATCY	2 cut(s)	581, 922
Bsu15I	ATCGAT	1 cut(s)	531
BsuI	GTATCC	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	723, 915
BsuTUI	ATCGAT	1 cut(s)	531
BtgI	CCRYGG	1 cut(s)	517
BtsIMutI	CAGTG	3 cut(s)	153, 608, 1047
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	487
CfoI	GCGC	3 cut(s)	52, 397, 515
Cfr13I	GGNCC	2 cut(s)	721, 913
ClaI	ATCGAT	1 cut(s)	531
Csp6I	GTAC	5 cut(s)	248, 763, 830, 855, 1003
CviAII	CATG	8 cut(s)	95, 225, 251, 287, 509, 518, 772, 835
CviQI	GTAC	5 cut(s)	248, 763, 830, 855, 1003
DdeI	CTNAG	2 cut(s)	114, 909
DinI	GGCGCC	1 cut(s)	514
DpnI	GATC	8 cut(s)	70, 376, 534, 549, 561, 583, 924, 1032
DpnII	GATC	8 cut(s)	68, 374, 532, 547, 559, 581, 922, 1030
DraI	TTTAAA	1 cut(s)	543
Eam1104I	CTCTTC	1 cut(s)	346
EarI	CTCTTC	1 cut(s)	346
Eco130I	CCWWGG	1 cut(s)	517
Eco57I	CTGAAG	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	517
EgeI	GGCGCC	1 cut(s)	514
EheI	GGCGCC	1 cut(s)	514
ErhI	CCWWGG	1 cut(s)	517
FaeI	CATG	8 cut(s)	98, 228, 254, 290, 512, 521, 775, 838
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FaqI	GGGAC	1 cut(s)	801
FatI	CATG	8 cut(s)	94, 224, 250, 286, 508, 517, 771, 834
FauNDI	CATATG	1 cut(s)	73
Fnu4HI	GCNGC	2 cut(s)	465, 867
Fsp4HI	GCNGC	2 cut(s)	465, 867
FspBI	CTAG	3 cut(s)	60, 587, 731
FspI	TGCGCA	1 cut(s)	396
GlaI	GCGC	3 cut(s)	51, 396, 514
GluI	GCNGC	2 cut(s)	465, 867
GsaI	CCCAGC	1 cut(s)	91
GsuI	CTGGAG	1 cut(s)	177
HaeII	RGCGCY	2 cut(s)	53, 516
HaeIII	GGCC	2 cut(s)	723, 915
HapII	CCGG	1 cut(s)	1034
HhaI	GCGC	3 cut(s)	52, 397, 515
Hin1I	GRCGYC	1 cut(s)	513
Hin1II	CATG	8 cut(s)	98, 228, 254, 290, 512, 521, 775, 838
Hin6I	GCGC	3 cut(s)	50, 395, 513
HinP1I	GCGC	3 cut(s)	50, 395, 513
HinfI	GANTC	3 cut(s)	692, 701, 756
HpaII	CCGG	1 cut(s)	1034
Hpy188I	TCNGA	4 cut(s)	117, 166, 279, 1030
Hpy188III	TCNNGA	6 cut(s)	16, 185, 587, 696, 959, 1064
HpyAV	CCTTC	2 cut(s)	32, 868
HpyCH4V	TGCA	3 cut(s)	467, 608, 920
HpyF10VI	GCNNNNNNNGC	5 cut(s)	251, 325, 473, 482, 519
HpyF3I	CTNAG	2 cut(s)	114, 909
Hsp92I	GRCGYC	1 cut(s)	513
Hsp92II	CATG	8 cut(s)	98, 228, 254, 290, 512, 521, 775, 838
HspAI	GCGC	3 cut(s)	50, 395, 513
KasI	GGCGCC	1 cut(s)	512
KpnI	GGTACC	1 cut(s)	858
Kzo9I	GATC	8 cut(s)	68, 374, 532, 547, 559, 581, 922, 1030
LmnI	GCTCC	3 cut(s)	211, 644, 994
Lsp1109I	GCAGC	2 cut(s)	451, 853
MaeI	CTAG	3 cut(s)	60, 587, 731
MaeIII	GTNAC	1 cut(s)	1043
MalI	GATC	8 cut(s)	70, 376, 534, 549, 561, 583, 924, 1032
MboI	GATC	8 cut(s)	68, 374, 532, 547, 559, 581, 922, 1030
MboII	GAAGA	5 cut(s)	128, 259, 262, 333, 802
MflI	RGATCY	2 cut(s)	581, 922
MluCI	AATT	7 cut(s)	398, 432, 441, 504, 660, 716, 736
Mly113I	GGCGCC	1 cut(s)	513
MmeI	TCCRAC	1 cut(s)	637
MnlI	CCTC	6 cut(s)	125, 288, 417, 447, 904, 1002
MseI	TTAA	3 cut(s)	419, 542, 984
MspI	CCGG	1 cut(s)	1034
MspR9I	CCNGG	1 cut(s)	195
Mva1269I	GAATGC	1 cut(s)	478
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	5 cut(s)	251, 325, 473, 482, 519
NarI	GGCGCC	1 cut(s)	513
NcoI	CCATGG	1 cut(s)	517
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	8 cut(s)	68, 374, 532, 547, 559, 581, 922, 1030
NlaIII	CATG	8 cut(s)	98, 228, 254, 290, 512, 521, 775, 838
NlaIV	GGNNCC	4 cut(s)	20, 333, 514, 856
NsbI	TGCGCA	1 cut(s)	396
NspI	RCATGY	3 cut(s)	98, 254, 290
PctI	GAATGC	1 cut(s)	478
PfeI	GAWTC	3 cut(s)	692, 701, 756
PkrI	GCNGC	2 cut(s)	466, 868
PluTI	GGCGCC	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	193
PspFI	CCCAGC	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	4 cut(s)	20, 333, 514, 856
PspPI	GGNCC	2 cut(s)	721, 913
PsuI	RGATCY	2 cut(s)	581, 922
RsaI	GTAC	5 cut(s)	249, 764, 831, 856, 1004
RsaNI	GTAC	5 cut(s)	248, 763, 830, 855, 1003
SaqAI	TTAA	3 cut(s)	419, 542, 984
SatI	GCNGC	2 cut(s)	465, 867
Sau3AI	GATC	8 cut(s)	68, 374, 532, 547, 559, 581, 922, 1030
Sau96I	GGNCC	2 cut(s)	721, 913
ScrFI	CCNGG	1 cut(s)	195
SetI	ASST	9 cut(s)	24, 136, 333, 409, 487, 528, 628, 860, 984
SfoI	GGCGCC	1 cut(s)	514
Sse9I	AATT	7 cut(s)	398, 432, 441, 504, 660, 716, 736
SsiI	CCGC	1 cut(s)	1074
SspDI	GGCGCC	1 cut(s)	512
SspMI	CTAG	3 cut(s)	60, 587, 731
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	1 cut(s)	517
TaqI	TCGA	3 cut(s)	531, 562, 754
TasI	AATT	7 cut(s)	398, 432, 441, 504, 660, 716, 736
TatI	WGTACW	3 cut(s)	247, 762, 1002
TfiI	GAWTC	3 cut(s)	692, 701, 756
Tru1I	TTAA	3 cut(s)	419, 542, 984
Tru9I	TTAA	3 cut(s)	419, 542, 984
TscAI	CASTG	3 cut(s)	160, 615, 1054
TseI	GCWGC	2 cut(s)	464, 866
TspDTI	ATGAA	5 cut(s)	14, 444, 497, 803, 850
TspRI	CASTG	3 cut(s)	160, 615, 1054
XapI	RAATTY	2 cut(s)	432, 504
XbaI	TCTAGA	1 cut(s)	586
XceI	RCATGY	3 cut(s)	98, 254, 290
XspI	CTAG	3 cut(s)	60, 587, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.