Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Reverse (-)

15030143 .. 15034011

Gene Structure 3869 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00230250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCTAACCAAGCTCCCACACTTCCTCTTCTTACTCCTTACAAAATGGGAAAGTTTGATCTTTCTCACAGAGTTGTTTTAGCACCAATGACTAGACAGAGATCATATGGAAATGTTCCCCAGCCACATGCCATCTTATATTACTCTCAGAGAACATCTAAAGGAGGTCTTCTCATAGCTGAAGCCACTGGAGTTTCTGACACAGCACAAGGGTATCCAGATACTCCTGGTATATGGACAAAGGAGCAAGTTGAAGCATGGAAACCCATTGTCAATGCTGTACATGCTAAAGGGGGTATCTTCTTCTGTCAGATTTGGCATGTGGGGAGGGTTTCAAATACTGGCTTTCAGCCAAATGGGCAAGCTCCAATCTCTTCTACTGACAAGCCCCTAACGCCCCAAGCTAATGGCGTTGATGTTGCCCAGTTCACCCCTCCAAGACGATTAAGGACAGATGAAATTCCTCAAATTGTCAATGATTTTAGACTTGCTGCAAGGAATGCTATGGAAGCTGGCTTTGATGGGGTTGAAATTCATGGTGCCCAAGGCTACCTTATCGATCAATTTTTAAAAGATCAAGTAAATGATCGAACAGACCAATATGGTGGATCTCTAGAAAAACGTTGCCGATTTGCACTAGACATTGTTGAAGCTGTTGTCAACGAGATAGGAGCAGATAAAGTTGGAATTAGATTATCTCCATTTGAATCCGGAGATTCTAATCCAAAGGAATTGGGACTCTATCTAGTCAATTCCTTGAACAAATATGGAATCCTGTACTGCCACATGTTTGAGCCAGGAATGACGACAGTGGGGGAAAAAATTGAATGTCCCCACAGTCTTGTACCCATGAGAAAGGCTTTTAATGGTACCTTCATTGCTGCTGGTGGTTTTGACAGGGAAGATGGGAACAATGCTGTGGCTGAGAGCCGTGCAGATCTTATTGCTTTTGGTCGTTGGTTCTTGGCTAATCCAGATTTGCCAAAGAGATTTGAGCTTAATGCTCCTCTAAATAAGTACAACATAGATACATTCTGCATATCTGATCCGGTTCTTGGTTACACTGATTATCCATTTCTTGACAGCACTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

364

Amino Acids

40.18

Weight (kDa)

5.84

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	10 - 337	1.6e-82	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	869
AccB1I	GGYRCC	2 cut(s)	539, 869
AccIII	TCCGGA	1 cut(s)	710
AclI	AACGTT	1 cut(s)	622
AclWI	GGATC	2 cut(s)	616, 1040
AcsI	RAATTY	2 cut(s)	459, 531
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	5 cut(s)	282, 779, 846, 871, 1019
AfiI	CCNNNNNNNGG	1 cut(s)	1055
AflIII	ACRYGT	1 cut(s)	786
AgsI	TTSAA	7 cut(s)	254, 336, 530, 650, 707, 760, 827
AjnI	CCWGG	2 cut(s)	226, 796
AluBI	AGCT	7 cut(s)	14, 179, 365, 404, 512, 653, 997
AluI	AGCT	7 cut(s)	14, 179, 365, 404, 512, 653, 997
AlwI	GGATC	2 cut(s)	616, 1040
Aor13HI	TCCGGA	1 cut(s)	710
ApeKI	GCWGC	2 cut(s)	491, 881
ApoI	RAATTY	2 cut(s)	459, 531
Asp718I	GGTACC	1 cut(s)	869
AsuHPI	GGTGA	1 cut(s)	421
BaeGI	GKGCMC	1 cut(s)	544
BaeI	ACNNNNGTAYC	2 cut(s)	197, 230
BanI	GGYRCC	2 cut(s)	539, 869
BbsI	GAAGAC	1 cut(s)	161
BbvI	GCAGC	2 cut(s)	478, 868
BccI	CCATC	3 cut(s)	140, 515, 899
BceAI	ACGGC	1 cut(s)	915
BciT130I	CCWGG	2 cut(s)	228, 798
BciVI	GTATCC	1 cut(s)	225
BfaI	CTAG	4 cut(s)	93, 614, 638, 746
BfuI	GTATCC	1 cut(s)	225
BglI	GCCNNNNNGGC	1 cut(s)	358
BglII	AGATCT	1 cut(s)	937
BisI	GCNGC	2 cut(s)	492, 882
BlsI	GCNGC	2 cut(s)	493, 883
Bme1390I	CCNGG	2 cut(s)	228, 798
BmiI	GGNNCC	2 cut(s)	541, 871
BmrFI	CCNGG	2 cut(s)	228, 798
BmrI	ACTGGG	1 cut(s)	418
BmuI	ACTGGG	1 cut(s)	418
BpiI	GAAGAC	1 cut(s)	161
BplI	GAGNNNNNCTC	2 cut(s)	156, 188
BpmI	CTGGAG	1 cut(s)	210
Bsa29I	ATCGAT	1 cut(s)	558
BsaBI	GATNNNNATC	1 cut(s)	720
BsaJI	CCNNGG	1 cut(s)	544
BsaWI	WCCGGW	2 cut(s)	710, 1048
Bsc4I	CCNNNNNNNGG	1 cut(s)	1055
Bse1I	ACTGG	3 cut(s)	193, 346, 424
Bse3DI	GCAATG	1 cut(s)	876
Bse8I	GATNNNNATC	1 cut(s)	720
BseAI	TCCGGA	1 cut(s)	710
BseBI	CCWGG	2 cut(s)	228, 798
BseCI	ATCGAT	1 cut(s)	558
BseDI	CCNNGG	1 cut(s)	544
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	1 cut(s)	1055
BseMI	GCAATG	1 cut(s)	876
BseMII	CTCAG	2 cut(s)	161, 915
BseNI	ACTGG	3 cut(s)	193, 346, 424
BseRI	GAGGAG	1 cut(s)	996
BseSI	GKGCMC	1 cut(s)	544
BseXI	GCAGC	2 cut(s)	478, 868
BseYI	CCCAGC	1 cut(s)	120
BsgI	GTGCAG	1 cut(s)	954
BshNI	GGYRCC	2 cut(s)	539, 869
BshVI	ATCGAT	1 cut(s)	558
BsiSI	CCGG	2 cut(s)	711, 1049
BslFI	GGGAC	2 cut(s)	750, 816
BslI	CCNNNNNNNGG	1 cut(s)	1055
BsmFI	GGGAC	2 cut(s)	750, 816
BsmI	GAATGC	1 cut(s)	505
Bsp1286I	GDGCHC	1 cut(s)	544
Bsp13I	TCCGGA	1 cut(s)	710
Bsp1407I	TGTACA	1 cut(s)	280
Bsp143I	GATC	8 cut(s)	58, 101, 559, 574, 586, 608, 937, 1045
BspCNI	CTCAG	2 cut(s)	160, 916
BspDI	ATCGAT	1 cut(s)	558
BspEI	TCCGGA	1 cut(s)	710
BspLI	GGNNCC	2 cut(s)	541, 871
BspPI	GGATC	2 cut(s)	616, 1040
BspT107I	GGYRCC	2 cut(s)	539, 869
BsrDI	GCAATG	1 cut(s)	876
BsrGI	TGTACA	1 cut(s)	280
BsrI	ACTGG	3 cut(s)	193, 346, 424
BssECI	CCNNGG	1 cut(s)	544
BssMI	GATC	8 cut(s)	58, 101, 559, 574, 586, 608, 937, 1045
BssT1I	CCWWGG	1 cut(s)	544
Bst2UI	CCWGG	2 cut(s)	228, 798
Bst4CI	ACNGT	2 cut(s)	811, 839
Bst6I	CTCTTC	2 cut(s)	33, 379
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstAUI	TGTACA	1 cut(s)	280
BstC8I	GCNNGC	2 cut(s)	363, 514
BstDEI	CTNAG	2 cut(s)	147, 924
BstKTI	GATC	8 cut(s)	61, 104, 562, 577, 589, 611, 940, 1048
BstMBI	GATC	8 cut(s)	58, 101, 559, 574, 586, 608, 937, 1045
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 284, 358, 394, 500, 509
BstNI	CCWGG	2 cut(s)	228, 798
BstNSI	RCATGY	4 cut(s)	131, 287, 323, 790
BstSCI	CCNGG	2 cut(s)	226, 796
BstSLI	GKGCMC	1 cut(s)	544
BstV1I	GCAGC	2 cut(s)	478, 868
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	2 cut(s)	608, 937
BstXI	CCANNNNNNTGG	2 cut(s)	407, 605
BstYI	RGATCY	2 cut(s)	608, 937
Bsu15I	ATCGAT	1 cut(s)	558
BsuI	GTATCC	1 cut(s)	225
BsuTUI	ATCGAT	1 cut(s)	558
BtsIMutI	CAGTG	3 cut(s)	186, 816, 1062
Cac8I	GCNNGC	2 cut(s)	363, 514
ClaI	ATCGAT	1 cut(s)	558
Csp6I	GTAC	5 cut(s)	281, 778, 845, 870, 1018
CviAII	CATG	7 cut(s)	128, 258, 284, 320, 536, 787, 850
CviQI	GTAC	5 cut(s)	281, 778, 845, 870, 1018
DdeI	CTNAG	2 cut(s)	147, 924
DpnI	GATC	8 cut(s)	60, 103, 561, 576, 588, 610, 939, 1047
DpnII	GATC	8 cut(s)	58, 101, 559, 574, 586, 608, 937, 1045
DraI	TTTAAA	1 cut(s)	570
Eam1104I	CTCTTC	2 cut(s)	33, 379
EarI	CTCTTC	2 cut(s)	33, 379
Eco130I	CCWWGG	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	201
EcoRII	CCWGG	2 cut(s)	226, 796
EcoT14I	CCWWGG	1 cut(s)	544
ErhI	CCWWGG	1 cut(s)	544
FaeI	CATG	7 cut(s)	131, 261, 287, 323, 539, 790, 853
FalI	AAGNNNNNCTT	4 cut(s)	153, 185, 537, 569
FaqI	GGGAC	2 cut(s)	750, 816
FatI	CATG	7 cut(s)	127, 257, 283, 319, 535, 786, 849
FauNDI	CATATG	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	492, 882
Fsp4HI	GCNGC	2 cut(s)	492, 882
FspBI	CTAG	4 cut(s)	93, 614, 638, 746
GluI	GCNGC	2 cut(s)	492, 882
GsaI	CCCAGC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	210
HapII	CCGG	2 cut(s)	711, 1049
Hin1II	CATG	7 cut(s)	131, 261, 287, 323, 539, 790, 853
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HinfI	GANTC	4 cut(s)	707, 716, 738, 771
HpaII	CCGG	2 cut(s)	711, 1049
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	2 cut(s)	429, 661
Hpy188I	TCNGA	4 cut(s)	150, 199, 312, 1045
Hpy188III	TCNNGA	5 cut(s)	218, 614, 711, 974, 1079
Hpy8I	GTNNAC	2 cut(s)	429, 661
HpyAV	CCTTC	1 cut(s)	883
HpyCH4III	ACNGT	2 cut(s)	811, 839
HpyCH4IV	ACGT	1 cut(s)	622
HpyCH4V	TGCA	4 cut(s)	494, 635, 935, 1038
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 284, 358, 394, 500, 509
HpyF3I	CTNAG	2 cut(s)	147, 924
HpySE526I	ACGT	1 cut(s)	622
Hsp92II	CATG	7 cut(s)	131, 261, 287, 323, 539, 790, 853
Kpn2I	TCCGGA	1 cut(s)	710
KpnI	GGTACC	1 cut(s)	873
Kzo9I	GATC	8 cut(s)	58, 101, 559, 574, 586, 608, 937, 1045
LmnI	GCTCC	5 cut(s)	19, 244, 370, 671, 1009
Lsp1109I	GCAGC	2 cut(s)	478, 868
MaeI	CTAG	4 cut(s)	93, 614, 638, 746
MaeII	ACGT	1 cut(s)	622
MaeIII	GTNAC	1 cut(s)	1058
MalI	GATC	8 cut(s)	60, 103, 561, 576, 588, 610, 939, 1047
MboI	GATC	8 cut(s)	58, 101, 559, 574, 586, 608, 937, 1045
MboII	GAAGA	6 cut(s)	20, 161, 292, 295, 366, 914
MflI	RGATCY	2 cut(s)	608, 937
MhlI	GDGCHC	1 cut(s)	544
MluCI	AATT	8 cut(s)	459, 468, 531, 563, 687, 731, 751, 822
MlyI	GAGTC	1 cut(s)	732
MmeI	TCCRAC	1 cut(s)	664
MnlI	CCTC	6 cut(s)	36, 158, 321, 444, 474, 1017
MroI	TCCGGA	1 cut(s)	710
MseI	TTAA	4 cut(s)	446, 569, 864, 999
MspI	CCGG	2 cut(s)	711, 1049
MspR9I	CCNGG	2 cut(s)	228, 798
Mva1269I	GAATGC	1 cut(s)	505
MvaI	CCWGG	2 cut(s)	228, 798
MwoI	GCNNNNNNNGC	6 cut(s)	11, 284, 358, 394, 500, 509
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	8 cut(s)	58, 101, 559, 574, 586, 608, 937, 1045
NlaIII	CATG	7 cut(s)	131, 261, 287, 323, 539, 790, 853
NlaIV	GGNNCC	2 cut(s)	541, 871
NspI	RCATGY	4 cut(s)	131, 287, 323, 790
PciI	ACATGT	1 cut(s)	786
PctI	GAATGC	1 cut(s)	505
PfeI	GAWTC	3 cut(s)	707, 716, 771
PkrI	GCNGC	2 cut(s)	493, 883
PleI	GAGTC	1 cut(s)	732
PpsI	GAGTC	1 cut(s)	732
PscI	ACATGT	1 cut(s)	786
Psp1406I	AACGTT	1 cut(s)	622
Psp6I	CCWGG	2 cut(s)	226, 796
PspFI	CCCAGC	1 cut(s)	120
PspGI	CCWGG	2 cut(s)	226, 796
PspN4I	GGNNCC	2 cut(s)	541, 871
PsuI	RGATCY	2 cut(s)	608, 937
RsaI	GTAC	5 cut(s)	282, 779, 846, 871, 1019
RsaNI	GTAC	5 cut(s)	281, 778, 845, 870, 1018
SaqAI	TTAA	4 cut(s)	446, 569, 864, 999
SatI	GCNGC	2 cut(s)	492, 882
Sau3AI	GATC	8 cut(s)	58, 101, 559, 574, 586, 608, 937, 1045
SchI	GAGTC	1 cut(s)	732
ScrFI	CCNGG	2 cut(s)	228, 798
SduI	GDGCHC	1 cut(s)	544
Sse9I	AATT	8 cut(s)	459, 468, 531, 563, 687, 731, 751, 822
SspMI	CTAG	4 cut(s)	93, 614, 638, 746
StyD4I	CCNGG	2 cut(s)	226, 796
StyI	CCWWGG	1 cut(s)	544
TaaI	ACNGT	2 cut(s)	811, 839
TaiI	ACGT	1 cut(s)	625
TaqI	TCGA	2 cut(s)	558, 589
TasI	AATT	8 cut(s)	459, 468, 531, 563, 687, 731, 751, 822
TatI	WGTACW	3 cut(s)	280, 777, 1017
TfiI	GAWTC	3 cut(s)	707, 716, 771
Tru1I	TTAA	4 cut(s)	446, 569, 864, 999
Tru9I	TTAA	4 cut(s)	446, 569, 864, 999
TscAI	CASTG	3 cut(s)	193, 816, 1069
TseI	GCWGC	2 cut(s)	491, 881
TspDTI	ATGAA	3 cut(s)	471, 524, 865
TspRI	CASTG	3 cut(s)	193, 816, 1069
XapI	RAATTY	2 cut(s)	459, 531
XbaI	TCTAGA	1 cut(s)	613
XceI	RCATGY	4 cut(s)	131, 287, 323, 790
XspI	CTAG	4 cut(s)	93, 614, 638, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.