Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Reverse (-)

50208509 .. 50210852

Gene Structure 2344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1401100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCTACCACTAATCAAGCTCAAGTAGGTGGTCCCACAAGCCCTCTCCTTGCTCCTTACAAACTTGGAAACTTCAATCTTTCTCATAGGGTTTCGTTTGCGAGTTTCTGCTGCAACTTTTGCGTTGCACCATTGACTAGACAAAGATCCTACAGAAATGTTCCTCAGCCGCATGCCATCTTATATTACTCTCAGAGAACATCTAACGGGGGTCTTCTCATATCTGAAGCCACTGGAATTTCTGACACCGCTCAAGGGTACCCAGACACTCCCGGTATATGGACAAAGGAGCAAGTTGAAGCATGGAAACCCATTGTTGATGCTGTTCATGCTAAAGGAGGCATCTTCTTCTGTCAGATTTGGCATGTTGGAAGGGTTTCAAATACCAGATCTCAGCCGAATGGGCAAGCTCCAATCTCTTCTACTGACGAGCCACTAAGCCCCCAACTACCATCTAGTGGCATTGATATTATTGAATATACTCCTCCAAGGCGATTAAGGACAGATGAAATCCCACAAATAGTCAATGATTTCAGACTTGCATCAAGAAATGCTATGGAAGCGGGCTTTGATGGAGTGGAAATTCATGGGGCCCATGGATACCTTATTGATCAGTTTCTGAAAGATGAAGTGAATGACCGAACAGACCAATATGGCGGATCTATGGAGAATCGTTGTCGATTTGCTCTGGAAGTCGTTGAAGCTGTTGTTAACGAGATAGGAGGGGATAAAGTTGGAATTAGATTATCTCCATTTGCCAACTATTCGGAATCAGGGGATTCAGGTCCGGAAGCATTGGGCCTTTATCTGGCCAATTCATTGAACAAATATGGGATCCTGTATTGCCATATGGTTGAGCCGAGGATGCAGACAGATGCAGAAAAGAGTGATTTCCCCAGAGAAGATGGGAACGATGCTGTGGCTGAGGGCCGTGCAGATCTTATTGCGTATGGCCGTATTTTCTTGGCGAATCCGGATTTGCCAAAGAGATTTGAGCTTAATGCTCCTCTAAATAAGTACAACAGAGAGACATTCTACATAGCTGATCCCGTCGTTGGTTACATTGATTATCCATTTCTTGAAGCCACTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

365

Amino Acids

40.25

Weight (kDa)

5.1

Isoelectric Point (pI)

32.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	16 - 275	1.1e-67	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	258
AccB1I	GGYRCC	1 cut(s)	258
AccB7I	CCANNNNNTGG	1 cut(s)	458
AccBSI	CCGCTC	1 cut(s)	251
AccIII	TCCGGA	2 cut(s)	787, 973
AciI	CCGC	4 cut(s)	170, 249, 563, 657
AclWI	GGATC	5 cut(s)	141, 667, 829, 842, 1040
AcoI	YGGCCR	2 cut(s)	810, 952
AcsI	RAATTY	2 cut(s)	237, 582
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	2 cut(s)	260, 1019
AfiI	CCNNNNNNNGG	5 cut(s)	255, 279, 458, 808, 1055
AgsI	TTSAA	7 cut(s)	76, 299, 381, 476, 701, 823, 1082
AluBI	AGCT	5 cut(s)	20, 410, 704, 997, 1043
AluI	AGCT	5 cut(s)	20, 410, 704, 997, 1043
Alw26I	GTCTC	1 cut(s)	1022
AlwI	GGATC	5 cut(s)	141, 667, 829, 842, 1040
AlwNI	CAGNNNCTG	1 cut(s)	619
Aor13HI	TCCGGA	2 cut(s)	787, 973
AoxI	GGCC	5 cut(s)	591, 799, 810, 928, 952
ApaI	GGGCCC	1 cut(s)	595
ApeKI	GCWGC	1 cut(s)	111
ApoI	RAATTY	2 cut(s)	237, 582
Asp700I	GAANNNNTTC	1 cut(s)	376
Asp718I	GGTACC	1 cut(s)	258
AspS9I	GGNCC	6 cut(s)	32, 591, 592, 785, 799, 928
AsuC2I	CCSGG	1 cut(s)	273
AvaII	GGWCC	2 cut(s)	32, 785
BaeGI	GKGCMC	1 cut(s)	595
BalI	TGGCCA	1 cut(s)	812
BamHI	GGATCC	1 cut(s)	834
BanI	GGYRCC	1 cut(s)	258
BanII	GRGCYC	1 cut(s)	595
BbsI	GAAGAC	1 cut(s)	206
BbvCI	CCTCAGC	2 cut(s)	165, 924
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	4 cut(s)	185, 460, 566, 899
BceAI	ACGGC	2 cut(s)	915, 939
BciVI	GTATCC	1 cut(s)	593
BclI	TGATCA	1 cut(s)	610
BcnI	CCSGG	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	1022
BfaI	CTAG	2 cut(s)	138, 456
BfmI	CTRYAG	1 cut(s)	151
BfuI	GTATCC	1 cut(s)	593
BglI	GCCNNNNNGGC	1 cut(s)	403
BglII	AGATCT	2 cut(s)	389, 937
BisI	GCNGC	2 cut(s)	112, 170
BlsI	GCNGC	2 cut(s)	113, 171
Bme1390I	CCNGG	1 cut(s)	273
Bme18I	GGWCC	2 cut(s)	32, 785
BmgT120I	GGNCC	6 cut(s)	32, 591, 592, 785, 799, 928
BmiI	GGNNCC	5 cut(s)	34, 260, 592, 593, 836
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	6 cut(s)	310, 351, 551, 855, 865, 904
BpiI	GAAGAC	1 cut(s)	206
Bpu10I	CCTNAGC	2 cut(s)	165, 924
BpuEI	CTTGAG	2 cut(s)	6, 237
BpuMI	CCSGG	1 cut(s)	273
BsaJI	CCNNGG	3 cut(s)	488, 595, 860
BsaWI	WCCGGW	2 cut(s)	787, 973
Bsc4I	CCNNNNNNNGG	5 cut(s)	255, 279, 458, 808, 1055
Bse1I	ACTGG	1 cut(s)	238
BseAI	TCCGGA	2 cut(s)	787, 973
BseDI	CCNNGG	3 cut(s)	488, 595, 860
BseGI	GGATG	1 cut(s)	870
BseLI	CCNNNNNNNGG	5 cut(s)	255, 279, 458, 808, 1055
BseMII	CTCAG	4 cut(s)	179, 206, 407, 915
BseNI	ACTGG	1 cut(s)	238
BseRI	GAGGAG	2 cut(s)	474, 996
BseSI	GKGCMC	1 cut(s)	595
BseXI	GCAGC	1 cut(s)	98
BsgI	GTGCAG	1 cut(s)	954
BshFI	GGCC	5 cut(s)	593, 801, 812, 930, 954
BshNI	GGYRCC	1 cut(s)	258
BsiSI	CCGG	3 cut(s)	273, 788, 974
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	5 cut(s)	255, 279, 458, 808, 1055
BsmAI	GTCTC	1 cut(s)	1022
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	5 cut(s)	593, 801, 812, 930, 954
Bsp120I	GGGCCC	1 cut(s)	591
Bsp1286I	GDGCHC	1 cut(s)	595
Bsp13I	TCCGGA	2 cut(s)	787, 973
Bsp143I	GATC	7 cut(s)	146, 389, 610, 659, 834, 937, 1045
Bsp19I	CCATGG	1 cut(s)	595
BspACI	CCGC	4 cut(s)	170, 249, 563, 657
BspANI	GGCC	5 cut(s)	593, 801, 812, 930, 954
BspCNI	CTCAG	4 cut(s)	178, 205, 406, 916
BspEI	TCCGGA	2 cut(s)	787, 973
BspLI	GGNNCC	5 cut(s)	34, 260, 592, 593, 836
BspPI	GGATC	5 cut(s)	141, 667, 829, 842, 1040
BspT107I	GGYRCC	1 cut(s)	258
BsrBI	CCGCTC	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	3 cut(s)	488, 595, 860
BssMI	GATC	7 cut(s)	146, 389, 610, 659, 834, 937, 1045
BssT1I	CCWWGG	2 cut(s)	488, 595
Bst6I	CTCTTC	1 cut(s)	424
BstAPI	GCANNNNNTGC	1 cut(s)	120
BstC8I	GCNNGC	3 cut(s)	174, 408, 565
BstDEI	CTNAG	5 cut(s)	165, 192, 393, 437, 924
BstDSI	CCRYGG	1 cut(s)	595
BstF5I	GGATG	1 cut(s)	870
BstKTI	GATC	7 cut(s)	149, 392, 613, 662, 837, 940, 1048
BstMAI	GTCTC	1 cut(s)	1022
BstMBI	GATC	7 cut(s)	146, 389, 610, 659, 834, 937, 1045
BstMWI	GCNNNNNNNGC	5 cut(s)	120, 329, 403, 560, 865
BstNSI	RCATGY	2 cut(s)	176, 368
BstSCI	CCNGG	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	151
BstSLI	GKGCMC	1 cut(s)	595
BstV1I	GCAGC	1 cut(s)	98
BstV2I	GAAGAC	1 cut(s)	206
BstX2I	RGATCY	5 cut(s)	146, 389, 659, 834, 937
BstYI	RGATCY	5 cut(s)	146, 389, 659, 834, 937
BsuI	GTATCC	1 cut(s)	593
BsuRI	GGCC	5 cut(s)	593, 801, 812, 930, 954
BtgI	CCRYGG	1 cut(s)	595
BtsCI	GGATG	1 cut(s)	870
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	3 cut(s)	174, 408, 565
CaiI	CAGNNNCTG	1 cut(s)	619
Cfr13I	GGNCC	6 cut(s)	32, 591, 592, 785, 799, 928
Csp6I	GTAC	2 cut(s)	259, 1018
CviAII	CATG	6 cut(s)	173, 303, 329, 365, 587, 596
CviQI	GTAC	2 cut(s)	259, 1018
DdeI	CTNAG	5 cut(s)	165, 192, 393, 437, 924
DpnI	GATC	7 cut(s)	148, 391, 612, 661, 836, 939, 1047
DpnII	GATC	7 cut(s)	146, 389, 610, 659, 834, 937, 1045
EaeI	YGGCCR	2 cut(s)	810, 952
Eam1104I	CTCTTC	1 cut(s)	424
EarI	CTCTTC	1 cut(s)	424
EciI	GGCGGA	1 cut(s)	672
Eco130I	CCWWGG	2 cut(s)	488, 595
Eco24I	GRGCYC	1 cut(s)	595
Eco47I	GGWCC	2 cut(s)	32, 785
Eco57I	CTGAAG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	591
EcoT14I	CCWWGG	2 cut(s)	488, 595
EcoT38I	GRGCYC	1 cut(s)	595
ErhI	CCWWGG	2 cut(s)	488, 595
FaeI	CATG	6 cut(s)	176, 306, 332, 368, 590, 599
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	6 cut(s)	172, 302, 328, 364, 586, 595
FauI	CCCGC	1 cut(s)	556
FauNDI	CATATG	1 cut(s)	849
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	2 cut(s)	112, 170
FokI	GGATG	1 cut(s)	877
FriOI	GRGCYC	1 cut(s)	595
Fsp4HI	GCNGC	2 cut(s)	112, 170
FspBI	CTAG	2 cut(s)	138, 456
GluI	GCNGC	2 cut(s)	112, 170
HaeIII	GGCC	5 cut(s)	593, 801, 812, 930, 954
HapII	CCGG	3 cut(s)	273, 788, 974
Hin1II	CATG	6 cut(s)	176, 306, 332, 368, 590, 599
HincII	GTYRAC	1 cut(s)	712
HindII	GTYRAC	1 cut(s)	712
HinfI	GANTC	4 cut(s)	670, 770, 779, 970
HpaI	GTTAAC	1 cut(s)	712
HpaII	CCGG	3 cut(s)	273, 788, 974
Hpy166II	GTNNAC	1 cut(s)	712
Hpy188I	TCNGA	7 cut(s)	195, 226, 244, 357, 536, 621, 769
Hpy188III	TCNNGA	5 cut(s)	546, 689, 788, 974, 1079
Hpy8I	GTNNAC	1 cut(s)	712
Hpy99I	CGWCG	1 cut(s)	1055
HpyAV	CCTTC	1 cut(s)	366
HpyCH4V	TGCA	6 cut(s)	114, 128, 542, 868, 878, 935
HpyF10VI	GCNNNNNNNGC	5 cut(s)	120, 329, 403, 560, 865
HpyF3I	CTNAG	5 cut(s)	165, 192, 393, 437, 924
Hsp92II	CATG	6 cut(s)	176, 306, 332, 368, 590, 599
Kpn2I	TCCGGA	2 cut(s)	787, 973
KpnI	GGTACC	1 cut(s)	262
Ksp22I	TGATCA	1 cut(s)	610
KspAI	GTTAAC	1 cut(s)	712
Kzo9I	GATC	7 cut(s)	146, 389, 610, 659, 834, 937, 1045
LmnI	GCTCC	4 cut(s)	58, 289, 415, 1009
Lsp1109I	GCAGC	1 cut(s)	98
LweI	GCATC	6 cut(s)	310, 351, 551, 855, 865, 904
MaeI	CTAG	2 cut(s)	138, 456
MaeIII	GTNAC	1 cut(s)	1058
MalI	GATC	7 cut(s)	148, 391, 612, 661, 836, 939, 1047
MbiI	CCGCTC	1 cut(s)	251
MboI	GATC	7 cut(s)	146, 389, 610, 659, 834, 937, 1045
MboII	GAAGA	5 cut(s)	206, 337, 340, 411, 914
MflI	RGATCY	5 cut(s)	146, 389, 659, 834, 937
MhlI	GDGCHC	1 cut(s)	595
MlsI	TGGCCA	1 cut(s)	812
MluCI	AATT	4 cut(s)	237, 582, 738, 814
MluNI	TGGCCA	1 cut(s)	812
MmeI	TCCRAC	2 cut(s)	349, 715
MnlI	CCTC	8 cut(s)	54, 174, 332, 495, 716, 855, 919, 1017
Mox20I	TGGCCA	1 cut(s)	812
MroI	TCCGGA	2 cut(s)	787, 973
MroXI	GAANNNNTTC	1 cut(s)	376
MscI	TGGCCA	1 cut(s)	812
MseI	TTAA	4 cut(s)	497, 711, 999, 1093
Msp20I	TGGCCA	1 cut(s)	812
MspI	CCGG	3 cut(s)	273, 788, 974
MspR9I	CCNGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	5 cut(s)	120, 329, 403, 560, 865
NciI	CCSGG	1 cut(s)	273
NcoI	CCATGG	1 cut(s)	595
NdeI	CATATG	1 cut(s)	849
NdeII	GATC	7 cut(s)	146, 389, 610, 659, 834, 937, 1045
NlaIII	CATG	6 cut(s)	176, 306, 332, 368, 590, 599
NlaIV	GGNNCC	5 cut(s)	34, 260, 592, 593, 836
NmeAIII	GCCGAG	1 cut(s)	885
NspI	RCATGY	2 cut(s)	176, 368
PaeI	GCATGC	1 cut(s)	176
PdmI	GAANNNNTTC	1 cut(s)	376
PfeI	GAWTC	4 cut(s)	670, 770, 779, 970
PflMI	CCANNNNNTGG	1 cut(s)	458
PkrI	GCNGC	2 cut(s)	113, 171
PspN4I	GGNNCC	5 cut(s)	34, 260, 592, 593, 836
PspOMI	GGGCCC	1 cut(s)	591
PspPI	GGNCC	6 cut(s)	32, 591, 592, 785, 799, 928
PstNI	CAGNNNCTG	1 cut(s)	619
PsuI	RGATCY	5 cut(s)	146, 389, 659, 834, 937
RsaI	GTAC	2 cut(s)	260, 1019
RsaNI	GTAC	2 cut(s)	259, 1018
SaqAI	TTAA	4 cut(s)	497, 711, 999, 1093
SatI	GCNGC	2 cut(s)	112, 170
Sau3AI	GATC	7 cut(s)	146, 389, 610, 659, 834, 937, 1045
Sau96I	GGNCC	6 cut(s)	32, 591, 592, 785, 799, 928
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	1 cut(s)	595
SetI	ASST	8 cut(s)	22, 31, 412, 606, 706, 787, 999, 1045
SfaNI	GCATC	6 cut(s)	310, 351, 551, 855, 865, 904
SfcI	CTRYAG	1 cut(s)	151
SinI	GGWCC	2 cut(s)	32, 785
SmlI	CTYRAG	2 cut(s)	21, 252
SmoI	CTYRAG	2 cut(s)	21, 252
SphI	GCATGC	1 cut(s)	176
Sse9I	AATT	4 cut(s)	237, 582, 738, 814
SsiI	CCGC	4 cut(s)	170, 249, 563, 657
SspMI	CTAG	2 cut(s)	138, 456
StyD4I	CCNGG	1 cut(s)	271
StyI	CCWWGG	2 cut(s)	488, 595
TaqI	TCGA	1 cut(s)	679
TaqII	GACCGA	1 cut(s)	654
TasI	AATT	4 cut(s)	237, 582, 738, 814
TatI	WGTACW	1 cut(s)	1017
TauI	GCSGC	1 cut(s)	172
TfiI	GAWTC	4 cut(s)	670, 770, 779, 970
Tru1I	TTAA	4 cut(s)	497, 711, 999, 1093
Tru9I	TTAA	4 cut(s)	497, 711, 999, 1093
TscAI	CASTG	1 cut(s)	238
TseI	GCWGC	1 cut(s)	111
TspDTI	ATGAA	5 cut(s)	317, 522, 575, 642, 807
TspRI	CASTG	1 cut(s)	238
Van91I	CCANNNNNTGG	1 cut(s)	458
VpaK11BI	GGWCC	2 cut(s)	32, 785
XapI	RAATTY	2 cut(s)	237, 582
XceI	RCATGY	2 cut(s)	176, 368
XmnI	GAANNNNTTC	1 cut(s)	376
XspI	CTAG	2 cut(s)	138, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.