Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Reverse (-)

36151933 .. 36154832

Gene Structure 2900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g36050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGCTACCACTGATGAAACTCAAGTAGGTGGTTCCACGAGCCCTCTCCTTTCTCCTTACAAACTTGGAAACTTCAATCTTTCTCATAGAGTTGTCTTAGCACCATTGACTAGACAAAGATCTTACGGAGGTGTTCCTCAGCCGCATGCGGTCTTATATTACTCTCAGAGAACATCTAACGGGGGTCTTCTCATAGCTGAAGCCACTGGAATTTCTGACACTGCTCAAGGGTACCCAGATACTCCCGGTATATGGACAAAGGAGCAAATTGAATCATGGAAACCCATTGTTGATGCTGTTCATGCTAAAGGTGGCATCTTCTTCTGTCAGATTTGGCATGGTGGGAGGATTTCAAATACCGGATTTCAGCCAAATGGGCAAGCTCCAATCTCTTCTACTGACAAGGTACTAGCCCCCCAAATACGAACTAATGGCATTGATGTTGCTGTATTTTCTCCTCCAAGGCGATTAAGGACAGATGAAGTCCCACAAATAGTCAATGATTTCAGACTTGCTGCAAGGAATGCTATGGAAGCTGGCTTTGATGGAGTGGAAATTCATGGGGCCCATGGATACCTTATTGAACAGTTTCTGAAAGATCAAGTGAATGACCGAACAGACCAATATGGCGGATCTATGGAGAATCGTTGTCGATTTGCTCTGGAAGTCGTTGAAGCTGTTGCTAACGAGATAGGAGCGGATAAAGTTGGAATTAGGTTATCTCCATTTGCTAACTATAATGGATCAGTGGATTCAGATCCCGAAGCGTTGGGCCTTTATCTGGCCAATGCGTTGAACAAATATGGGATCCTGTACTGCCATATGGTTGAGCCGAGGATGAAGACAGTTGGAGAAAAAAGTGATTGCCCCCAGAGTCTTGTACCCATGAGAAAGGCTTTTAATGGTACATTCATTGCTGCTGGTGGTTATGAGGAGGTGGATGGGAGCAATGCTGTGGCTGAGGGCCATGCAGATCTTATCGCTTATGGTCGTTGGTTCTTGGCTAACCCAGACTTGCCGAAGAGGTTCGAGCTTAATGCTCCTCTGAACAAATACAACAGAAGCACATTCTACGTGTCTGAACCGGTTATTGGCTACACTGATTATCCGTTCCTTGACACCACTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

377

Amino Acids

41.14

Weight (kDa)

5.54

Isoelectric Point (pI)

33.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	16 - 349	1e-84	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	231
AccBSI	CCGCTC	1 cut(s)	698
AciI	CCGC	4 cut(s)	143, 149, 630, 698
AclWI	GGATC	5 cut(s)	640, 751, 752, 802, 815
AcoI	YGGCCR	1 cut(s)	783
AcsI	RAATTY	2 cut(s)	210, 555
AcuI	CTGAAG	1 cut(s)	219
AfaI	GTAC	5 cut(s)	233, 408, 815, 882, 907
AfiI	CCNNNNNNNGG	3 cut(s)	252, 781, 1091
AflIII	ACRYGT	1 cut(s)	1074
AgeI	ACCGGT	1 cut(s)	1084
AgsI	TTSAA	6 cut(s)	76, 272, 354, 584, 674, 796
AjuI	GAANNNNNNNTTGG	2 cut(s)	1074, 1106
AluBI	AGCT	5 cut(s)	197, 383, 536, 677, 1033
AluI	AGCT	5 cut(s)	197, 383, 536, 677, 1033
AlwI	GGATC	5 cut(s)	640, 751, 752, 802, 815
AlwNI	CAGNNNCTG	1 cut(s)	592
AoxI	GGCC	4 cut(s)	564, 772, 783, 964
ApaI	GGGCCC	1 cut(s)	568
ApeKI	GCWGC	2 cut(s)	515, 917
ApoI	RAATTY	2 cut(s)	210, 555
AsiGI	ACCGGT	1 cut(s)	1084
Asp700I	GAANNNNTTC	2 cut(s)	588, 1025
Asp718I	GGTACC	1 cut(s)	231
AspS9I	GGNCC	4 cut(s)	564, 565, 772, 964
AsuC2I	CCSGG	1 cut(s)	246
BaeGI	GKGCMC	1 cut(s)	568
BalI	TGGCCA	1 cut(s)	785
BamHI	GGATCC	1 cut(s)	807
BanI	GGYRCC	1 cut(s)	231
BanII	GRGCYC	2 cut(s)	44, 568
BauI	CACGAG	1 cut(s)	37
BbsI	GAAGAC	2 cut(s)	179, 848
BbvCI	CCTCAGC	2 cut(s)	138, 960
BbvI	GCAGC	2 cut(s)	502, 904
BccI	CCATC	2 cut(s)	539, 935
BcgI	CGANNNNNNTGC	2 cut(s)	1019, 1053
BciVI	GTATCC	1 cut(s)	566
BcnI	CCSGG	1 cut(s)	246
BfaI	CTAG	2 cut(s)	111, 410
BfuI	GTATCC	1 cut(s)	566
BglI	GCCNNNNNGGC	1 cut(s)	376
BglII	AGATCT	2 cut(s)	119, 973
BisI	GCNGC	3 cut(s)	143, 516, 918
BlsI	GCNGC	3 cut(s)	144, 517, 919
Bme1390I	CCNGG	1 cut(s)	246
BmgT120I	GGNCC	4 cut(s)	564, 565, 772, 964
BmiI	GGNNCC	5 cut(s)	34, 233, 565, 566, 809
BmrFI	CCNGG	1 cut(s)	246
BmsI	GCATC	2 cut(s)	283, 324
BpiI	GAAGAC	2 cut(s)	179, 848
Bpu10I	CCTNAGC	2 cut(s)	138, 960
BpuEI	CTTGAG	2 cut(s)	6, 210
BpuMI	CCSGG	1 cut(s)	246
BsaAI	YACGTR	1 cut(s)	1075
BsaBI	GATNNNNATC	1 cut(s)	756
BsaJI	CCNNGG	3 cut(s)	461, 568, 833
BsaWI	WCCGGW	2 cut(s)	359, 1084
Bsc4I	CCNNNNNNNGG	3 cut(s)	252, 781, 1091
Bse118I	RCCGGY	1 cut(s)	1084
Bse1I	ACTGG	1 cut(s)	211
Bse3DI	GCAATG	2 cut(s)	912, 955
Bse8I	GATNNNNATC	1 cut(s)	756
BseDI	CCNNGG	3 cut(s)	461, 568, 833
BseGI	GGATG	2 cut(s)	843, 946
BseJI	GATNNNNATC	1 cut(s)	756
BseLI	CCNNNNNNNGG	3 cut(s)	252, 781, 1091
BseMI	GCAATG	2 cut(s)	912, 955
BseMII	CTCAG	3 cut(s)	152, 179, 951
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	3 cut(s)	447, 947, 1032
BseSI	GKGCMC	1 cut(s)	568
BseXI	GCAGC	2 cut(s)	502, 904
BshFI	GGCC	4 cut(s)	566, 774, 785, 966
BshNI	GGYRCC	1 cut(s)	231
BshTI	ACCGGT	1 cut(s)	1084
BsiSI	CCGG	3 cut(s)	246, 360, 1085
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	3 cut(s)	252, 781, 1091
BsmFI	GGGAC	1 cut(s)	470
BsmI	GAATGC	1 cut(s)	529
BsnI	GGCC	4 cut(s)	566, 774, 785, 966
Bsp120I	GGGCCC	1 cut(s)	564
Bsp1286I	GDGCHC	2 cut(s)	44, 568
Bsp143I	GATC	7 cut(s)	119, 598, 632, 743, 757, 807, 973
Bsp19I	CCATGG	1 cut(s)	568
BspACI	CCGC	4 cut(s)	143, 149, 630, 698
BspANI	GGCC	4 cut(s)	566, 774, 785, 966
BspCNI	CTCAG	3 cut(s)	151, 178, 952
BspLI	GGNNCC	5 cut(s)	34, 233, 565, 566, 809
BspPI	GGATC	5 cut(s)	640, 751, 752, 802, 815
BspT107I	GGYRCC	1 cut(s)	231
BsrBI	CCGCTC	1 cut(s)	698
BsrDI	GCAATG	2 cut(s)	912, 955
BsrFI	RCCGGY	1 cut(s)	1084
BsrI	ACTGG	1 cut(s)	211
BssAI	RCCGGY	1 cut(s)	1084
BssECI	CCNNGG	3 cut(s)	461, 568, 833
BssMI	GATC	7 cut(s)	119, 598, 632, 743, 757, 807, 973
BssSI	CACGAG	1 cut(s)	37
BssT1I	CCWWGG	2 cut(s)	461, 568
Bst2BI	CACGAG	1 cut(s)	37
Bst4CI	ACNGT	2 cut(s)	588, 847
Bst6I	CTCTTC	2 cut(s)	397, 1016
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstBAI	YACGTR	1 cut(s)	1075
BstC8I	GCNNGC	3 cut(s)	147, 381, 538
BstDEI	CTNAG	4 cut(s)	97, 138, 165, 960
BstDSI	CCRYGG	1 cut(s)	568
BstF5I	GGATG	2 cut(s)	843, 946
BstKTI	GATC	7 cut(s)	122, 601, 635, 746, 760, 810, 976
BstMBI	GATC	7 cut(s)	119, 598, 632, 743, 757, 807, 973
BstMWI	GCNNNNNNNGC	4 cut(s)	302, 376, 524, 533
BstNSI	RCATGY	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	244
BstSLI	GKGCMC	1 cut(s)	568
BstV1I	GCAGC	2 cut(s)	502, 904
BstV2I	GAAGAC	2 cut(s)	179, 848
BstX2I	RGATCY	5 cut(s)	119, 632, 757, 807, 973
BstYI	RGATCY	5 cut(s)	119, 632, 757, 807, 973
BsuI	GTATCC	1 cut(s)	566
BsuRI	GGCC	4 cut(s)	566, 774, 785, 966
BtgI	CCRYGG	1 cut(s)	568
BtsCI	GGATG	2 cut(s)	843, 946
BtsI	GCAGTG	2 cut(s)	219, 1122
BtsIMutI	CAGTG	6 cut(s)	9, 204, 219, 753, 1098, 1122
Cac8I	GCNNGC	3 cut(s)	147, 381, 538
CaiI	CAGNNNCTG	1 cut(s)	592
Cfr10I	RCCGGY	1 cut(s)	1084
Cfr13I	GGNCC	4 cut(s)	564, 565, 772, 964
Csp6I	GTAC	5 cut(s)	232, 407, 814, 881, 906
CspAI	ACCGGT	1 cut(s)	1084
CviAII	CATG	8 cut(s)	146, 276, 302, 338, 560, 569, 886, 968
CviQI	GTAC	5 cut(s)	232, 407, 814, 881, 906
DdeI	CTNAG	4 cut(s)	97, 138, 165, 960
DpnI	GATC	7 cut(s)	121, 600, 634, 745, 759, 809, 975
DpnII	GATC	7 cut(s)	119, 598, 632, 743, 757, 807, 973
EaeI	YGGCCR	1 cut(s)	783
Eam1104I	CTCTTC	2 cut(s)	397, 1016
EarI	CTCTTC	2 cut(s)	397, 1016
EciI	GGCGGA	1 cut(s)	645
Eco130I	CCWWGG	2 cut(s)	461, 568
Eco24I	GRGCYC	2 cut(s)	44, 568
Eco57I	CTGAAG	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	564
EcoT14I	CCWWGG	2 cut(s)	461, 568
EcoT38I	GRGCYC	2 cut(s)	44, 568
ErhI	CCWWGG	2 cut(s)	461, 568
FaeI	CATG	8 cut(s)	149, 279, 305, 341, 563, 572, 889, 971
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	8 cut(s)	145, 275, 301, 337, 559, 568, 885, 967
FauNDI	CATATG	1 cut(s)	822
Fnu4HI	GCNGC	3 cut(s)	143, 516, 918
FokI	GGATG	2 cut(s)	850, 953
FriOI	GRGCYC	2 cut(s)	44, 568
Fsp4HI	GCNGC	3 cut(s)	143, 516, 918
FspBI	CTAG	2 cut(s)	111, 410
GluI	GCNGC	3 cut(s)	143, 516, 918
HaeIII	GGCC	4 cut(s)	566, 774, 785, 966
HapII	CCGG	3 cut(s)	246, 360, 1085
Hin1II	CATG	8 cut(s)	149, 279, 305, 341, 563, 572, 889, 971
HinfI	GANTC	4 cut(s)	272, 643, 752, 874
HpaII	CCGG	3 cut(s)	246, 360, 1085
Hpy188I	TCNGA	8 cut(s)	168, 217, 330, 509, 594, 757, 1047, 1081
Hpy188III	TCNNGA	2 cut(s)	662, 761
HpyCH4III	ACNGT	2 cut(s)	588, 847
HpyCH4IV	ACGT	1 cut(s)	1074
HpyCH4V	TGCA	3 cut(s)	518, 971, 1127
HpyF10VI	GCNNNNNNNGC	4 cut(s)	302, 376, 524, 533
HpyF3I	CTNAG	4 cut(s)	97, 138, 165, 960
HpySE526I	ACGT	1 cut(s)	1074
Hsp92II	CATG	8 cut(s)	149, 279, 305, 341, 563, 572, 889, 971
KpnI	GGTACC	1 cut(s)	235
Kzo9I	GATC	7 cut(s)	119, 598, 632, 743, 757, 807, 973
LmnI	GCTCC	5 cut(s)	262, 388, 695, 945, 1045
Lsp1109I	GCAGC	2 cut(s)	502, 904
LweI	GCATC	2 cut(s)	283, 324
MaeI	CTAG	2 cut(s)	111, 410
MaeII	ACGT	1 cut(s)	1074
MalI	GATC	7 cut(s)	121, 600, 634, 745, 759, 809, 975
MbiI	CCGCTC	1 cut(s)	698
MboI	GATC	7 cut(s)	119, 598, 632, 743, 757, 807, 973
MboII	GAAGA	6 cut(s)	179, 310, 313, 384, 853, 1033
MflI	RGATCY	5 cut(s)	119, 632, 757, 807, 973
MhlI	GDGCHC	2 cut(s)	44, 568
MlsI	TGGCCA	1 cut(s)	785
MluCI	AATT	4 cut(s)	210, 267, 555, 711
MluNI	TGGCCA	1 cut(s)	785
MlyI	GAGTC	1 cut(s)	883
MmeI	TCCRAC	2 cut(s)	688, 829
Mox20I	TGGCCA	1 cut(s)	785
MroXI	GAANNNNTTC	2 cut(s)	588, 1025
MscI	TGGCCA	1 cut(s)	785
MseI	TTAA	3 cut(s)	470, 900, 1035
Msp20I	TGGCCA	1 cut(s)	785
MspI	CCGG	3 cut(s)	246, 360, 1085
MspR9I	CCNGG	1 cut(s)	246
Mva1269I	GAATGC	1 cut(s)	529
MwoI	GCNNNNNNNGC	4 cut(s)	302, 376, 524, 533
NciI	CCSGG	1 cut(s)	246
NcoI	CCATGG	1 cut(s)	568
NdeI	CATATG	1 cut(s)	822
NdeII	GATC	7 cut(s)	119, 598, 632, 743, 757, 807, 973
NlaIII	CATG	8 cut(s)	149, 279, 305, 341, 563, 572, 889, 971
NlaIV	GGNNCC	5 cut(s)	34, 233, 565, 566, 809
NmeAIII	GCCGAG	1 cut(s)	858
NspI	RCATGY	1 cut(s)	149
PaeI	GCATGC	1 cut(s)	149
PctI	GAATGC	1 cut(s)	529
PdmI	GAANNNNTTC	2 cut(s)	588, 1025
PfeI	GAWTC	3 cut(s)	272, 643, 752
PinAI	ACCGGT	1 cut(s)	1084
PkrI	GCNGC	3 cut(s)	144, 517, 919
PleI	GAGTC	1 cut(s)	882
PpsI	GAGTC	1 cut(s)	882
Ppu21I	YACGTR	1 cut(s)	1075
PspN4I	GGNNCC	5 cut(s)	34, 233, 565, 566, 809
PspOMI	GGGCCC	1 cut(s)	564
PspPI	GGNCC	4 cut(s)	564, 565, 772, 964
PstNI	CAGNNNCTG	1 cut(s)	592
PsuI	RGATCY	5 cut(s)	119, 632, 757, 807, 973
RsaI	GTAC	5 cut(s)	233, 408, 815, 882, 907
RsaNI	GTAC	5 cut(s)	232, 407, 814, 881, 906
SaqAI	TTAA	3 cut(s)	470, 900, 1035
SatI	GCNGC	3 cut(s)	143, 516, 918
Sau3AI	GATC	7 cut(s)	119, 598, 632, 743, 757, 807, 973
Sau96I	GGNCC	4 cut(s)	564, 565, 772, 964
SchI	GAGTC	1 cut(s)	883
ScrFI	CCNGG	1 cut(s)	246
SduI	GDGCHC	2 cut(s)	44, 568
SfaNI	GCATC	2 cut(s)	283, 324
SmlI	CTYRAG	2 cut(s)	21, 225
SmoI	CTYRAG	2 cut(s)	21, 225
SphI	GCATGC	1 cut(s)	149
Sse9I	AATT	4 cut(s)	210, 267, 555, 711
SsiI	CCGC	4 cut(s)	143, 149, 630, 698
SspMI	CTAG	2 cut(s)	111, 410
StyD4I	CCNGG	1 cut(s)	244
StyI	CCWWGG	2 cut(s)	461, 568
TaaI	ACNGT	2 cut(s)	588, 847
TaiI	ACGT	1 cut(s)	1077
TaqI	TCGA	2 cut(s)	652, 1029
TaqII	GACCGA	1 cut(s)	627
TasI	AATT	4 cut(s)	210, 267, 555, 711
TatI	WGTACW	1 cut(s)	813
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	3 cut(s)	272, 643, 752
Tru1I	TTAA	3 cut(s)	470, 900, 1035
Tru9I	TTAA	3 cut(s)	470, 900, 1035
TscAI	CASTG	6 cut(s)	16, 211, 226, 753, 1105, 1129
TseI	GCWGC	2 cut(s)	515, 917
TspDTI	ATGAA	6 cut(s)	30, 290, 495, 548, 854, 901
TspGWI	ACGGA	2 cut(s)	141, 1098
TspRI	CASTG	6 cut(s)	16, 211, 226, 753, 1105, 1129
XapI	RAATTY	2 cut(s)	210, 555
XceI	RCATGY	1 cut(s)	149
XmnI	GAANNNNTTC	2 cut(s)	588, 1025
XspI	CTAG	2 cut(s)	111, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.