FvH4_5g32680

12-oxophytodienoate reductase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
23590766 .. 23595225
4460 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g32680.t1

Sequence Viewer

Length: 1125 bp
ATGGCTAACCAAGCTCCCACACTTCCTCTCCTTACTCCTTACAAGTTGGGAAAGTTTGATCTTTCTCACAGAGTTGTTTTAGCACCATTGACTAGACAGAGATCATACAGAAATGTTCCCCAGCCACATGCCATCTTATATTACTCTCAGAGAACATCCAAAGGGGGTCTTCTCATAAGTGAAGCCACTGGAGTTTCAGACACAGCACAAGGGTATCCAGATACTCCTGGTATATGGACCAAGGAGCAAGTTGAAGCATGGAAACCCATTGTCAATGCTGTACATGCTAAAGGGGGTATCTTCATCTGTCAGATTTGGCATGTCGGGAGGGTTTCAAATAGTGGCTATCAGCCGAATGGGCAAGCTCCAATCTCTTCTACTGACAAGCCCCTAACCCCCCAGATACGAGCTAATGGCATTGATGTTGCGCAATTCACACCTCCAAGACGATTAAGGACAGATGAAATTCCTCAAATTGTCAATGATTTTAGACTTGCTGCAAGGAATGCAATGGAAGCTGGCTTTGATGGGGTTGAAATCCATGGCGCCCATGGCTACCTAATCGATCAATTTTTAAAAGATGAAGTAAATGATCGAACAGACCAATATGGTGGGTCTCTAGAAAACCGTTGCCGATTTGCACTAGACATTGTTGAAGCTATTGTCAACGAGATAGGAGCAGATAAAGTTGGAATTAGATTATCTCCATTTGCCAACTATATGGAATCCGGAGATTCTAATCCAAAGGAATTGGGACTCTATCTAGCCAATGCCTTGAACAAATATGGAATCCTGTACTGCCACATGGTTGAGCCAAGAATGAAGACAGTTGGAGAAAAGTTTGAATGTCCCCACAGTCTTGTACCCATGAGAAAGGCTTTTAATGGTACCTTCATTGCTGCTGGTGGTTTTGACAGGGACGATGGGAACAATGCTGTTGCTGAAGGCCGTGCAGATCTTATAGCTTTCGGTCGTTGGTTCTTAGCTAATCCGGACTTGCCAAAGAGATTTGAGCTCAATGCTCCTTTAAACAAGTACAACAGAGATACTTTCTACATATCTGATCCGGTTCTTGGTTACACTGATTATCCATTTCTCGACAGCAATGCTCGAGTATCCAGCTGA

Protein Analysis

375

Amino Acids

41.54

Weight (kDa)

6.72

Isoelectric Point (pI)

29.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_FMN PF00724 10 - 343 2.6e-86 NADH:flavin oxidoreductase / NADH oxidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 429
Acc65I GGTACC 1 cut(s) 887
AccB1I GGYRCC 2 cut(s) 545, 887
AccIII TCCGGA 2 cut(s) 728, 991
AclWI GGATC 1 cut(s) 1058
AcsI RAATTY 1 cut(s) 465
AcuI CTGAAG 1 cut(s) 963
AcyI GRCGYC 1 cut(s) 546
AfaI GTAC 5 cut(s) 282, 797, 864, 889, 1037
AfiI CCNNNNNNNGG 1 cut(s) 1073
AgsI TTSAA 6 cut(s) 254, 336, 536, 656, 778, 845
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 9 cut(s) 14, 365, 410, 518, 659, 965, 986, 1015, 1122
AluI AGCT 9 cut(s) 14, 365, 410, 518, 659, 965, 986, 1015, 1122
Alw21I GWGCWC 1 cut(s) 1017
Alw26I GTCTC 1 cut(s) 621
AlwI GGATC 1 cut(s) 1058
Ama87I CYCGRG 1 cut(s) 1110
Aor13HI TCCGGA 2 cut(s) 728, 991
AoxI GGCC 1 cut(s) 946
ApeKI GCWGC 2 cut(s) 497, 899
ApoI RAATTY 1 cut(s) 465
Asp718I GGTACC 1 cut(s) 887
AspLEI GCGC 2 cut(s) 430, 548
AspS9I GGNCC 1 cut(s) 237
AvaI CYCGRG 1 cut(s) 1110
AvaII GGWCC 1 cut(s) 237
BaeI ACNNNNGTAYC 2 cut(s) 197, 230
BanI GGYRCC 2 cut(s) 545, 887
BanII GRGCYC 1 cut(s) 1017
BbsI GAAGAC 2 cut(s) 161, 830
Bbv12I GWGCWC 1 cut(s) 1017
BbvI GCAGC 2 cut(s) 484, 886
BccI CCATC 3 cut(s) 140, 521, 917
BceAI ACGGC 1 cut(s) 933
BcgI CGANNNNNNTGC 2 cut(s) 1088, 1122
BciT130I CCWGG 1 cut(s) 228
BciVI GTATCC 1 cut(s) 225
BcoDI GTCTC 1 cut(s) 621
BfaI CTAG 4 cut(s) 93, 620, 644, 764
BfoI RGCGCY 1 cut(s) 549
BfuI GTATCC 1 cut(s) 225
BglI GCCNNNNNGGC 1 cut(s) 358
BglII AGATCT 1 cut(s) 955
BisI GCNGC 2 cut(s) 498, 900
BlsI GCNGC 2 cut(s) 499, 901
Bme1390I CCNGG 1 cut(s) 228
Bme18I GGWCC 1 cut(s) 237
BmeT110I CYCGRG 1 cut(s) 1110
BmgT120I GGNCC 1 cut(s) 237
BmiI GGNNCC 2 cut(s) 547, 889
BmrFI CCNGG 1 cut(s) 228
BpiI GAAGAC 2 cut(s) 161, 830
BpmI CTGGAG 1 cut(s) 210
Bsa29I ATCGAT 1 cut(s) 564
BsaBI GATNNNNATC 1 cut(s) 738
BsaHI GRCGYC 1 cut(s) 546
BsaI GGTCTC 1 cut(s) 621
BsaJI CCNNGG 3 cut(s) 240, 541, 550
BsaWI WCCGGW 3 cut(s) 728, 991, 1066
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 1 cut(s) 1073
Bse1I ACTGG 1 cut(s) 193
Bse3DI GCAATG 3 cut(s) 516, 894, 1111
Bse8I GATNNNNATC 1 cut(s) 738
BseAI TCCGGA 2 cut(s) 728, 991
BseBI CCWGG 1 cut(s) 228
BseCI ATCGAT 1 cut(s) 564
BseDI CCNNGG 3 cut(s) 240, 541, 550
BseGI GGATG 1 cut(s) 155
BseJI GATNNNNATC 1 cut(s) 738
BseLI CCNNNNNNNGG 1 cut(s) 1073
BseMI GCAATG 3 cut(s) 516, 894, 1111
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 193
BseXI GCAGC 2 cut(s) 484, 886
BseYI CCCAGC 1 cut(s) 120
BsgI GTGCAG 1 cut(s) 972
Bsh1285I CGRYCG 1 cut(s) 973
BshFI GGCC 1 cut(s) 948
BshNI GGYRCC 2 cut(s) 545, 887
BshVI ATCGAT 1 cut(s) 564
BsiEI CGRYCG 1 cut(s) 973
BsiHKAI GWGCWC 1 cut(s) 1017
BsiHKCI CYCGRG 1 cut(s) 1110
BsiSI CCGG 3 cut(s) 729, 992, 1067
BslFI GGGAC 3 cut(s) 768, 834, 932
BslI CCNNNNNNNGG 1 cut(s) 1073
BsmAI GTCTC 1 cut(s) 621
BsmFI GGGAC 3 cut(s) 768, 834, 932
BsmI GAATGC 1 cut(s) 511
BsnI GGCC 1 cut(s) 948
Bso31I GGTCTC 1 cut(s) 621
BsoBI CYCGRG 1 cut(s) 1110
Bsp1286I GDGCHC 1 cut(s) 1017
Bsp13I TCCGGA 2 cut(s) 728, 991
Bsp1407I TGTACA 1 cut(s) 280
Bsp143I GATC 6 cut(s) 58, 101, 565, 592, 955, 1063
Bsp19I CCATGG 2 cut(s) 541, 550
BspANI GGCC 1 cut(s) 948
BspCNI CTCAG 1 cut(s) 160
BspDI ATCGAT 1 cut(s) 564
BspEI TCCGGA 2 cut(s) 728, 991
BspLI GGNNCC 2 cut(s) 547, 889
BspPI GGATC 1 cut(s) 1058
BspT107I GGYRCC 2 cut(s) 545, 887
BspTNI GGTCTC 1 cut(s) 621
BsrDI GCAATG 3 cut(s) 516, 894, 1111
BsrGI TGTACA 1 cut(s) 280
BsrI ACTGG 1 cut(s) 193
BssECI CCNNGG 3 cut(s) 240, 541, 550
BssMI GATC 6 cut(s) 58, 101, 565, 592, 955, 1063
BssNI GRCGYC 1 cut(s) 546
BssT1I CCWWGG 3 cut(s) 240, 541, 550
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 3 cut(s) 629, 829, 857
Bst6I CTCTTC 1 cut(s) 379
BstACI GRCGYC 1 cut(s) 546
BstAPI GCANNNNNTGC 1 cut(s) 506
BstAUI TGTACA 1 cut(s) 280
BstC8I GCNNGC 2 cut(s) 363, 520
BstDEI CTNAG 2 cut(s) 147, 982
BstDSI CCRYGG 2 cut(s) 541, 550
BstF5I GGATG 1 cut(s) 155
BstH2I RGCGCY 1 cut(s) 549
BstHHI GCGC 2 cut(s) 430, 548
BstKTI GATC 6 cut(s) 61, 104, 568, 595, 958, 1066
BstMAI GTCTC 1 cut(s) 621
BstMBI GATC 6 cut(s) 58, 101, 565, 592, 955, 1063
BstMCI CGRYCG 1 cut(s) 973
BstMWI GCNNNNNNNGC 6 cut(s) 11, 284, 358, 506, 515, 552
BstNI CCWGG 1 cut(s) 228
BstNSI RCATGY 3 cut(s) 131, 287, 323
BstSCI CCNGG 1 cut(s) 226
BstV1I GCAGC 2 cut(s) 484, 886
BstV2I GAAGAC 2 cut(s) 161, 830
BstX2I RGATCY 1 cut(s) 955
BstXI CCANNNNNNTGG 2 cut(s) 611, 721
BstYI RGATCY 1 cut(s) 955
Bsu15I ATCGAT 1 cut(s) 564
BsuI GTATCC 1 cut(s) 225
BsuRI GGCC 1 cut(s) 948
BsuTUI ATCGAT 1 cut(s) 564
BtgI CCRYGG 2 cut(s) 541, 550
BtsCI GGATG 1 cut(s) 155
BtsIMutI CAGTG 2 cut(s) 186, 1080
Cac8I GCNNGC 2 cut(s) 363, 520
CfoI GCGC 2 cut(s) 430, 548
Cfr13I GGNCC 1 cut(s) 237
ClaI ATCGAT 1 cut(s) 564
Csp6I GTAC 5 cut(s) 281, 796, 863, 888, 1036
CviAII CATG 8 cut(s) 128, 258, 284, 320, 542, 551, 805, 868
CviQI GTAC 5 cut(s) 281, 796, 863, 888, 1036
DdeI CTNAG 2 cut(s) 147, 982
DinI GGCGCC 1 cut(s) 547
DpnI GATC 6 cut(s) 60, 103, 567, 594, 957, 1065
DpnII GATC 6 cut(s) 58, 101, 565, 592, 955, 1063
DraI TTTAAA 2 cut(s) 576, 1029
Eam1104I CTCTTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 379
Ecl136II GAGCTC 1 cut(s) 1015
Eco130I CCWWGG 3 cut(s) 240, 541, 550
Eco24I GRGCYC 1 cut(s) 1017
Eco31I GGTCTC 1 cut(s) 621
Eco47I GGWCC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 1015
Eco57I CTGAAG 1 cut(s) 963
Eco88I CYCGRG 1 cut(s) 1110
EcoICRI GAGCTC 1 cut(s) 1015
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 3 cut(s) 240, 541, 550
EcoT38I GRGCYC 1 cut(s) 1017
EgeI GGCGCC 1 cut(s) 547
EheI GGCGCC 1 cut(s) 547
ErhI CCWWGG 3 cut(s) 240, 541, 550
FaeI CATG 8 cut(s) 131, 261, 287, 323, 545, 554, 808, 871
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FaqI GGGAC 3 cut(s) 768, 834, 932
FatI CATG 8 cut(s) 127, 257, 283, 319, 541, 550, 804, 867
Fnu4HI GCNGC 2 cut(s) 498, 900
FokI GGATG 1 cut(s) 142
FriOI GRGCYC 1 cut(s) 1017
Fsp4HI GCNGC 2 cut(s) 498, 900
FspBI CTAG 4 cut(s) 93, 620, 644, 764
FspI TGCGCA 1 cut(s) 429
GlaI GCGC 2 cut(s) 429, 547
GluI GCNGC 2 cut(s) 498, 900
GsaI CCCAGC 1 cut(s) 124
GsuI CTGGAG 1 cut(s) 210
HaeII RGCGCY 1 cut(s) 549
HaeIII GGCC 1 cut(s) 948
HapII CCGG 3 cut(s) 729, 992, 1067
HhaI GCGC 2 cut(s) 430, 548
Hin1I GRCGYC 1 cut(s) 546
Hin1II CATG 8 cut(s) 131, 261, 287, 323, 545, 554, 808, 871
Hin6I GCGC 2 cut(s) 428, 546
HinP1I GCGC 2 cut(s) 428, 546
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HinfI GANTC 4 cut(s) 725, 734, 756, 789
HpaII CCGG 3 cut(s) 729, 992, 1067
Hpy166II GTNNAC 1 cut(s) 667
Hpy188I TCNGA 4 cut(s) 150, 199, 312, 1063
Hpy188III TCNNGA 6 cut(s) 218, 325, 620, 729, 992, 1097
Hpy8I GTNNAC 1 cut(s) 667
HpyAV CCTTC 2 cut(s) 901, 938
HpyCH4III ACNGT 3 cut(s) 629, 829, 857
HpyCH4V TGCA 4 cut(s) 500, 509, 641, 953
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 284, 358, 506, 515, 552
HpyF3I CTNAG 2 cut(s) 147, 982
Hsp92I GRCGYC 1 cut(s) 546
Hsp92II CATG 8 cut(s) 131, 261, 287, 323, 545, 554, 808, 871
HspAI GCGC 2 cut(s) 428, 546
KasI GGCGCC 1 cut(s) 545
Kpn2I TCCGGA 2 cut(s) 728, 991
KpnI GGTACC 1 cut(s) 891
Kzo9I GATC 6 cut(s) 58, 101, 565, 592, 955, 1063
LmnI GCTCC 5 cut(s) 19, 244, 370, 677, 1027
Lsp1109I GCAGC 2 cut(s) 484, 886
MaeI CTAG 4 cut(s) 93, 620, 644, 764
MaeIII GTNAC 1 cut(s) 1076
MalI GATC 6 cut(s) 60, 103, 567, 594, 957, 1065
MboI GATC 6 cut(s) 58, 101, 565, 592, 955, 1063
MboII GAAGA 4 cut(s) 161, 292, 366, 835
MflI RGATCY 1 cut(s) 955
MhlI GDGCHC 1 cut(s) 1017
MluCI AATT 6 cut(s) 431, 465, 474, 569, 693, 749
Mly113I GGCGCC 1 cut(s) 546
MlyI GAGTC 1 cut(s) 750
MmeI TCCRAC 2 cut(s) 670, 811
MnlI CCTC 4 cut(s) 36, 321, 450, 480
MroI TCCGGA 2 cut(s) 728, 991
MseI TTAA 4 cut(s) 452, 575, 882, 1028
MspA1I CMGCKG 1 cut(s) 1122
MspI CCGG 3 cut(s) 729, 992, 1067
MspR9I CCNGG 1 cut(s) 228
Mva1269I GAATGC 1 cut(s) 511
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 6 cut(s) 11, 284, 358, 506, 515, 552
NarI GGCGCC 1 cut(s) 546
NcoI CCATGG 2 cut(s) 541, 550
NdeII GATC 6 cut(s) 58, 101, 565, 592, 955, 1063
NlaIII CATG 8 cut(s) 131, 261, 287, 323, 545, 554, 808, 871
NlaIV GGNNCC 2 cut(s) 547, 889
NsbI TGCGCA 1 cut(s) 429
NspI RCATGY 3 cut(s) 131, 287, 323
PaeR7I CTCGAG 1 cut(s) 1110
PctI GAATGC 1 cut(s) 511
PfeI GAWTC 3 cut(s) 725, 734, 789
PkrI GCNGC 2 cut(s) 499, 901
PleI GAGTC 1 cut(s) 750
PluTI GGCGCC 1 cut(s) 549
PpsI GAGTC 1 cut(s) 750
Psp124BI GAGCTC 1 cut(s) 1017
Psp6I CCWGG 1 cut(s) 226
PspFI CCCAGC 1 cut(s) 120
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 2 cut(s) 547, 889
PspPI GGNCC 1 cut(s) 237
PspXI VCTCGAGB 1 cut(s) 1110
PsuI RGATCY 1 cut(s) 955
PvuII CAGCTG 1 cut(s) 1122
RsaI GTAC 5 cut(s) 282, 797, 864, 889, 1037
RsaNI GTAC 5 cut(s) 281, 796, 863, 888, 1036
SacI GAGCTC 1 cut(s) 1017
SaqAI TTAA 4 cut(s) 452, 575, 882, 1028
SatI GCNGC 2 cut(s) 498, 900
Sau3AI GATC 6 cut(s) 58, 101, 565, 592, 955, 1063
Sau96I GGNCC 1 cut(s) 237
SchI GAGTC 1 cut(s) 750
ScrFI CCNGG 1 cut(s) 228
SduI GDGCHC 1 cut(s) 1017
SfoI GGCGCC 1 cut(s) 547
Sfr274I CTCGAG 1 cut(s) 1110
SinI GGWCC 1 cut(s) 237
SlaI CTCGAG 1 cut(s) 1110
SmlI CTYRAG 1 cut(s) 1110
SmoI CTYRAG 1 cut(s) 1110
Sse9I AATT 6 cut(s) 431, 465, 474, 569, 693, 749
SspDI GGCGCC 1 cut(s) 545
SspMI CTAG 4 cut(s) 93, 620, 644, 764
SstI GAGCTC 1 cut(s) 1017
StyD4I CCNGG 1 cut(s) 226
StyI CCWWGG 3 cut(s) 240, 541, 550
TaaI ACNGT 3 cut(s) 629, 829, 857
TaqI TCGA 4 cut(s) 564, 595, 1098, 1111
TaqII GACCGA 1 cut(s) 959
TasI AATT 6 cut(s) 431, 465, 474, 569, 693, 749
TatI WGTACW 3 cut(s) 280, 795, 1035
TfiI GAWTC 3 cut(s) 725, 734, 789
Tru1I TTAA 4 cut(s) 452, 575, 882, 1028
Tru9I TTAA 4 cut(s) 452, 575, 882, 1028
TscAI CASTG 2 cut(s) 193, 1087
TseI GCWGC 2 cut(s) 497, 899
TspDTI ATGAA 5 cut(s) 292, 477, 597, 836, 883
TspRI CASTG 2 cut(s) 193, 1087
VpaK11BI GGWCC 1 cut(s) 237
XapI RAATTY 1 cut(s) 465
XbaI TCTAGA 1 cut(s) 619
XceI RCATGY 3 cut(s) 131, 287, 323
XcmI CCANNNNNNNNNTGG 1 cut(s) 548
XhoI CTCGAG 1 cut(s) 1110
XspI CTAG 4 cut(s) 93, 620, 644, 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.