Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007103.1

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Reverse (-)

117520 .. 122978

Gene Structure 5459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007103.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atggatgtgaaatcggcgtggactcaaagactctttctcaacggcgggtttggggtcggcgaaggcatcgtaaaggcagttgaggaggaccgagaggccgtcggcggagagggtgtggattattttctcgagattttcgacggagatttgcgagaaagacccatcgacagccagccatggatctcgctgccaacaacccatgctaggaagcaaacaaggaaaacgggacagagcccaaacgaggaggcctcccccaaccctcaagcctacgatctggatccggagggatcaagatccgggcaagaggggagggggagaagaaactgctttcaaccaaatgggcaagctccaatctcttctactgacaagtccctaacccccaaaataatatctaatggtattgatgttatgcaattcacacctccaagacgcttaaggacagatgaaattcctcaaattgtcaatgatttcagacttgctgcgaggaatgctatggaagctggctttgacggtgttgaaattcatggcgcccatggctaccttatcgatcagtttttaaaagataaagtaaatgatcgaacagaccaatatggtggatctctagaaaagcgttgccgatttgcactagacattgttgaagctgttgtcaatgagataggagcagataaagttggagttagattatctccatttgccgactatatggaatctggagattctaatccaaaggaattgggactctatctagtcaattccttgaacaaatatggaatcctgtactgccacatggttgagccaagaatgaagacagttggggaaaaaattgaatgtccccacggtcttgtacccatgagaaaggcttttaatggtaccttcattgctgctggtggttttgacagggaagatgggaacaatgctgtagctgagggccgtgcagatcttattgcttttggtcgttggttcttggctaacccagatttgccaaagagatttgagcttaatgctcctctaaataagtacgacagagatacattctacatatctgatccggttcttggttacactgattatccatttcttgacagcactgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

364

Amino Acids

40.48

Weight (kDa)

5.07

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	869
AccB1I	GGYRCC	2 cut(s)	527, 869
AccIII	TCCGGA	1 cut(s)	280
AciI	CCGC	2 cut(s)	45, 105
AclWI	GGATC	7 cut(s)	188, 272, 285, 288, 295, 604, 1040
AcsI	RAATTY	2 cut(s)	447, 519
AcyI	GRCGYC	1 cut(s)	528
AfaI	GTAC	4 cut(s)	779, 846, 871, 1019
AfiI	CCNNNNNNNGG	3 cut(s)	204, 241, 1055
AflII	CTTAAG	1 cut(s)	433
AgsI	TTSAA	5 cut(s)	332, 518, 638, 760, 827
AluBI	AGCT	5 cut(s)	347, 500, 641, 923, 997
AluI	AGCT	5 cut(s)	347, 500, 641, 923, 997
AlwI	GGATC	7 cut(s)	188, 272, 285, 288, 295, 604, 1040
Ama87I	CYCGRG	1 cut(s)	128
Aor13HI	TCCGGA	1 cut(s)	280
AoxI	GGCC	3 cut(s)	96, 246, 928
ApeKI	GCWGC	3 cut(s)	187, 479, 881
ApoI	RAATTY	2 cut(s)	447, 519
Asp718I	GGTACC	1 cut(s)	869
AspLEI	GCGC	1 cut(s)	530
AspS9I	GGNCC	2 cut(s)	88, 928
AsuC2I	CCSGG	1 cut(s)	298
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	88
BamHI	GGATCC	1 cut(s)	277
BanI	GGYRCC	2 cut(s)	527, 869
BanII	GRGCYC	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	812
BbvCI	CCTCAGC	1 cut(s)	924
BbvI	GCAGC	3 cut(s)	174, 466, 868
BccI	CCATC	2 cut(s)	170, 899
BceAI	ACGGC	3 cut(s)	58, 83, 915
BcnI	CCSGG	1 cut(s)	298
BfaI	CTAG	4 cut(s)	204, 602, 626, 746
BfmI	CTRYAG	1 cut(s)	918
BfoI	RGCGCY	1 cut(s)	531
BfrI	CTTAAG	1 cut(s)	433
BglII	AGATCT	1 cut(s)	937
BisI	GCNGC	3 cut(s)	188, 480, 882
BlsI	GCNGC	3 cut(s)	189, 481, 883
Bme1390I	CCNGG	1 cut(s)	298
Bme18I	GGWCC	1 cut(s)	88
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	88, 928
BmiI	GGNNCC	3 cut(s)	279, 529, 871
BmrFI	CCNGG	1 cut(s)	298
BmsI	GCATC	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	812
BplI	GAGNNNNNCTC	2 cut(s)	233, 265
BpmI	CTGGAG	1 cut(s)	732
Bpu10I	CCTNAGC	1 cut(s)	924
BpuEI	CTTGAG	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	298
Bsa29I	ATCGAT	1 cut(s)	546
BsaBI	GATNNNNATC	3 cut(s)	276, 292, 720
BsaHI	GRCGYC	1 cut(s)	528
BsaJI	CCNNGG	3 cut(s)	176, 532, 835
BsaWI	WCCGGW	2 cut(s)	280, 1048
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 241, 1055
Bse3DI	GCAATG	1 cut(s)	876
Bse8I	GATNNNNATC	3 cut(s)	276, 292, 720
BseAI	TCCGGA	1 cut(s)	280
BseCI	ATCGAT	1 cut(s)	546
BseDI	CCNNGG	3 cut(s)	176, 532, 835
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	3 cut(s)	276, 292, 720
BseLI	CCNNNNNNNGG	3 cut(s)	204, 241, 1055
BseMI	GCAATG	1 cut(s)	876
BseMII	CTCAG	1 cut(s)	915
BseRI	GAGGAG	3 cut(s)	98, 257, 996
BseXI	GCAGC	3 cut(s)	174, 466, 868
BsgI	GTGCAG	1 cut(s)	954
BshFI	GGCC	3 cut(s)	98, 248, 930
BshNI	GGYRCC	2 cut(s)	527, 869
BshVI	ATCGAT	1 cut(s)	546
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	3 cut(s)	281, 297, 1049
BslFI	GGGAC	4 cut(s)	240, 355, 750, 816
BslI	CCNNNNNNNGG	3 cut(s)	204, 241, 1055
BsmFI	GGGAC	4 cut(s)	240, 355, 750, 816
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	3 cut(s)	98, 248, 930
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp13I	TCCGGA	1 cut(s)	280
Bsp19I	CCATGG	2 cut(s)	176, 532
BspACI	CCGC	2 cut(s)	45, 105
BspANI	GGCC	3 cut(s)	98, 248, 930
BspCNI	CTCAG	1 cut(s)	916
BspDI	ATCGAT	1 cut(s)	546
BspEI	TCCGGA	1 cut(s)	280
BspLI	GGNNCC	3 cut(s)	279, 529, 871
BspPI	GGATC	7 cut(s)	188, 272, 285, 288, 295, 604, 1040
BspT107I	GGYRCC	2 cut(s)	527, 869
BspTI	CTTAAG	1 cut(s)	433
BsrDI	GCAATG	1 cut(s)	876
BssECI	CCNNGG	3 cut(s)	176, 532, 835
BssNI	GRCGYC	1 cut(s)	528
BssT1I	CCWWGG	2 cut(s)	176, 532
Bst4CI	ACNGT	3 cut(s)	512, 811, 839
Bst6I	CTCTTC	1 cut(s)	361
BstACI	GRCGYC	1 cut(s)	528
BstAFI	CTTAAG	1 cut(s)	433
BstC8I	GCNNGC	3 cut(s)	173, 345, 502
BstDEI	CTNAG	1 cut(s)	924
BstDSI	CCRYGG	3 cut(s)	176, 532, 835
BstF5I	GGATG	1 cut(s)	10
BstH2I	RGCGCY	1 cut(s)	531
BstHHI	GCGC	1 cut(s)	530
BstMWI	GCNNNNNNNGC	3 cut(s)	488, 497, 534
BstSCI	CCNGG	1 cut(s)	296
BstSFI	CTRYAG	1 cut(s)	918
BstV1I	GCAGC	3 cut(s)	174, 466, 868
BstV2I	GAAGAC	1 cut(s)	812
BstX2I	RGATCY	5 cut(s)	180, 277, 293, 596, 937
BstXI	CCANNNNNNTGG	1 cut(s)	593
BstYI	RGATCY	5 cut(s)	180, 277, 293, 596, 937
Bsu15I	ATCGAT	1 cut(s)	546
BsuRI	GGCC	3 cut(s)	98, 248, 930
BsuTUI	ATCGAT	1 cut(s)	546
BtgI	CCRYGG	3 cut(s)	176, 532, 835
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	1086
BtsIMutI	CAGTG	2 cut(s)	1062, 1086
Cac8I	GCNNGC	3 cut(s)	173, 345, 502
CfoI	GCGC	1 cut(s)	530
Cfr13I	GGNCC	2 cut(s)	88, 928
ClaI	ATCGAT	1 cut(s)	546
CseI	GACGC	1 cut(s)	438
Csp6I	GTAC	4 cut(s)	778, 845, 870, 1018
CviAII	CATG	6 cut(s)	177, 200, 524, 533, 787, 850
CviQI	GTAC	4 cut(s)	778, 845, 870, 1018
DdeI	CTNAG	1 cut(s)	924
DinI	GGCGCC	1 cut(s)	529
DraI	TTTAAA	1 cut(s)	558
Eam1104I	CTCTTC	1 cut(s)	361
EarI	CTCTTC	1 cut(s)	361
EciI	GGCGGA	1 cut(s)	120
Eco130I	CCWWGG	2 cut(s)	176, 532
Eco147I	AGGCCT	1 cut(s)	248
Eco24I	GRGCYC	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	88
Eco88I	CYCGRG	1 cut(s)	128
EcoT14I	CCWWGG	2 cut(s)	176, 532
EcoT38I	GRGCYC	1 cut(s)	236
EgeI	GGCGCC	1 cut(s)	529
EheI	GGCGCC	1 cut(s)	529
ErhI	CCWWGG	2 cut(s)	176, 532
FaeI	CATG	6 cut(s)	180, 203, 527, 536, 790, 853
FaqI	GGGAC	4 cut(s)	240, 355, 750, 816
FatI	CATG	6 cut(s)	176, 199, 523, 532, 786, 849
FauI	CCCGC	1 cut(s)	38
Fnu4HI	GCNGC	3 cut(s)	188, 480, 882
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	3 cut(s)	188, 480, 882
FspBI	CTAG	4 cut(s)	204, 602, 626, 746
GlaI	GCGC	1 cut(s)	529
GluI	GCNGC	3 cut(s)	188, 480, 882
GsuI	CTGGAG	1 cut(s)	732
HaeII	RGCGCY	1 cut(s)	531
HaeIII	GGCC	3 cut(s)	98, 248, 930
HapII	CCGG	3 cut(s)	281, 297, 1049
HgaI	GACGC	1 cut(s)	438
HhaI	GCGC	1 cut(s)	530
Hin1I	GRCGYC	1 cut(s)	528
Hin1II	CATG	6 cut(s)	180, 203, 527, 536, 790, 853
Hin6I	GCGC	1 cut(s)	528
HinP1I	GCGC	1 cut(s)	528
HinfI	GANTC	6 cut(s)	22, 30, 707, 716, 738, 771
HpaII	CCGG	3 cut(s)	281, 297, 1049
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	2 cut(s)	473, 1045
Hpy188III	TCNNGA	8 cut(s)	128, 130, 275, 281, 291, 602, 711, 1079
Hpy8I	GTNNAC	1 cut(s)	21
Hpy99I	CGWCG	2 cut(s)	104, 143
HpyAV	CCTTC	2 cut(s)	56, 883
HpyCH4III	ACNGT	3 cut(s)	512, 811, 839
HpyCH4V	TGCA	3 cut(s)	412, 623, 935
HpyF10VI	GCNNNNNNNGC	3 cut(s)	488, 497, 534
HpyF3I	CTNAG	1 cut(s)	924
Hsp92I	GRCGYC	1 cut(s)	528
Hsp92II	CATG	6 cut(s)	180, 203, 527, 536, 790, 853
HspAI	GCGC	1 cut(s)	528
KasI	GGCGCC	1 cut(s)	527
Kpn2I	TCCGGA	1 cut(s)	280
KpnI	GGTACC	1 cut(s)	873
LmnI	GCTCC	3 cut(s)	352, 659, 1009
Lsp1109I	GCAGC	3 cut(s)	174, 466, 868
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	4 cut(s)	204, 602, 626, 746
MaeIII	GTNAC	1 cut(s)	1058
MboII	GAAGA	4 cut(s)	330, 348, 817, 914
MflI	RGATCY	5 cut(s)	180, 277, 293, 596, 937
MhlI	GDGCHC	1 cut(s)	236
MluCI	AATT	7 cut(s)	413, 447, 456, 519, 731, 751, 822
Mly113I	GGCGCC	1 cut(s)	528
MlyI	GAGTC	3 cut(s)	16, 24, 732
MmeI	TCCRAC	1 cut(s)	652
MroI	TCCGGA	1 cut(s)	280
MseI	TTAA	4 cut(s)	434, 557, 864, 999
MspCI	CTTAAG	1 cut(s)	433
MspI	CCGG	3 cut(s)	281, 297, 1049
MspR9I	CCNGG	1 cut(s)	298
Mva1269I	GAATGC	1 cut(s)	493
MwoI	GCNNNNNNNGC	3 cut(s)	488, 497, 534
NarI	GGCGCC	1 cut(s)	528
NciI	CCSGG	1 cut(s)	298
NcoI	CCATGG	2 cut(s)	176, 532
NlaIII	CATG	6 cut(s)	180, 203, 527, 536, 790, 853
NlaIV	GGNNCC	3 cut(s)	279, 529, 871
PaeR7I	CTCGAG	1 cut(s)	128
PceI	AGGCCT	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PctI	GAATGC	1 cut(s)	493
PfeI	GAWTC	3 cut(s)	707, 716, 771
PkrI	GCNGC	3 cut(s)	189, 481, 883
PleI	GAGTC	3 cut(s)	16, 24, 732
PluTI	GGCGCC	1 cut(s)	531
PpsI	GAGTC	3 cut(s)	16, 24, 732
PspN4I	GGNNCC	3 cut(s)	279, 529, 871
PspPI	GGNCC	2 cut(s)	88, 928
PsuI	RGATCY	5 cut(s)	180, 277, 293, 596, 937
RsaI	GTAC	4 cut(s)	779, 846, 871, 1019
RsaNI	GTAC	4 cut(s)	778, 845, 870, 1018
SaqAI	TTAA	4 cut(s)	434, 557, 864, 999
SatI	GCNGC	3 cut(s)	188, 480, 882
Sau96I	GGNCC	2 cut(s)	88, 928
SchI	GAGTC	3 cut(s)	16, 24, 732
ScrFI	CCNGG	1 cut(s)	298
SduI	GDGCHC	1 cut(s)	236
SetI	ASST	8 cut(s)	349, 424, 502, 543, 643, 875, 925, 999
SfaNI	GCATC	1 cut(s)	75
SfcI	CTRYAG	1 cut(s)	918
SfoI	GGCGCC	1 cut(s)	529
Sfr274I	CTCGAG	1 cut(s)	128
SinI	GGWCC	1 cut(s)	88
SlaI	CTCGAG	1 cut(s)	128
SmlI	CTYRAG	3 cut(s)	128, 261, 433
SmoI	CTYRAG	3 cut(s)	128, 261, 433
Sse9I	AATT	7 cut(s)	413, 447, 456, 519, 731, 751, 822
SseBI	AGGCCT	1 cut(s)	248
SsiI	CCGC	2 cut(s)	45, 105
SspDI	GGCGCC	1 cut(s)	527
SspMI	CTAG	4 cut(s)	204, 602, 626, 746
StuI	AGGCCT	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	296
StyI	CCWWGG	2 cut(s)	176, 532
TaaI	ACNGT	3 cut(s)	512, 811, 839
TaqI	TCGA	5 cut(s)	129, 138, 165, 546, 577
TaqII	GACCGA	1 cut(s)	105
TasI	AATT	7 cut(s)	413, 447, 456, 519, 731, 751, 822
TatI	WGTACW	1 cut(s)	777
TfiI	GAWTC	3 cut(s)	707, 716, 771
Tru1I	TTAA	4 cut(s)	434, 557, 864, 999
Tru9I	TTAA	4 cut(s)	434, 557, 864, 999
TscAI	CASTG	2 cut(s)	1069, 1093
TseI	GCWGC	3 cut(s)	187, 479, 881
TspDTI	ATGAA	4 cut(s)	459, 512, 818, 865
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	2 cut(s)	1069, 1093
Vha464I	CTTAAG	1 cut(s)	433
VpaK11BI	GGWCC	1 cut(s)	88
XapI	RAATTY	2 cut(s)	447, 519
XbaI	TCTAGA	1 cut(s)	601
XhoI	CTCGAG	1 cut(s)	128
XspI	CTAG	4 cut(s)	204, 602, 626, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.