Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002541.1

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Reverse (-)

137670 .. 139467

Gene Structure 1798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002541.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

atgttgacctgcctaacacactttggctgccttcgcccacgacccagcccacagcgagaaagacccatcgacagccagccatggatcttgctgccaacaacccatgctaggaagcaaacaaggaaaacgggacagagcccaaaagaggaggcctcccccaaccctcaagcctacgatctggatccggagggatcaagatccgggcaagaggggagggggagaagaaactgctttcaaccaaatgggcaagctccaatctcttctactgacaagtccctaacccccaaaataatatctaatggtattgatgttatgcaattcacacctccaagacgcttaaggacagatgaaattcctcaaattgtcaatgatttcagacttgctgcgaggaatgctatggaagctggctttgatggggttgaaattcatggcgccaatggctaccttatagatcagtttttaaaagatcaagtaaatgatcgaacagaccaatatggtggatctctagaaaatcgttgccgatttgcactagacattgttgaagctgccgtcaatgagataggagcagacaaagttggaattagattatctccatttgctgactatatggaatccggagattctaatccaaaggaattgggcctttatcttgtcaattccttgaacaaatatggaatcctgtactgccacatggttgagccaagaatgaagacagttggggaaaaaagtgaaagtccccacagtcttgtacccatgagaaaggcttttaatggtaccttcattgctgctggtggttttgacagggaagatgggaacaatgctgtggctgagggccgtgcagatcttattgcttttggtcgttggttcttggctaacccagatttgccaaagagatttgagtttaatgctcctctaaataagtacgacagagatacattctacatatctgatccggttcttggttacactgattatccatttcttgacagcactgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

332

Amino Acids

37.11

Weight (kDa)

5.84

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	17
Acc65I	GGTACC	1 cut(s)	773
AccB1I	GGYRCC	2 cut(s)	431, 773
AccIII	TCCGGA	2 cut(s)	184, 614
AclWI	GGATC	7 cut(s)	92, 176, 189, 192, 199, 508, 944
AcsI	RAATTY	2 cut(s)	351, 423
AcyI	GRCGYC	1 cut(s)	432
AfaI	GTAC	4 cut(s)	683, 750, 775, 923
AfiI	CCNNNNNNNGG	3 cut(s)	108, 145, 959
AflII	CTTAAG	1 cut(s)	337
AgsI	TTSAA	4 cut(s)	236, 422, 542, 664
AluBI	AGCT	3 cut(s)	251, 404, 545
AluI	AGCT	3 cut(s)	251, 404, 545
AlwI	GGATC	7 cut(s)	92, 176, 189, 192, 199, 508, 944
Aor13HI	TCCGGA	2 cut(s)	184, 614
AoxI	GGCC	3 cut(s)	150, 640, 832
ApeKI	GCWGC	5 cut(s)	27, 91, 383, 545, 785
ApoI	RAATTY	2 cut(s)	351, 423
Asp718I	GGTACC	1 cut(s)	773
AspLEI	GCGC	1 cut(s)	434
AspS9I	GGNCC	2 cut(s)	640, 832
AsuC2I	CCSGG	1 cut(s)	202
BamHI	GGATCC	1 cut(s)	181
BanI	GGYRCC	2 cut(s)	431, 773
BanII	GRGCYC	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	716
BbvCI	CCTCAGC	1 cut(s)	828
BbvI	GCAGC	5 cut(s)	14, 78, 370, 532, 772
BccI	CCATC	3 cut(s)	74, 407, 803
BceAI	ACGGC	2 cut(s)	533, 819
BcnI	CCSGG	1 cut(s)	202
BfaI	CTAG	3 cut(s)	108, 506, 530
BfoI	RGCGCY	1 cut(s)	435
BfrI	CTTAAG	1 cut(s)	337
BfuAI	ACCTGC	1 cut(s)	17
BglII	AGATCT	1 cut(s)	841
BisI	GCNGC	5 cut(s)	28, 92, 384, 546, 786
BlsI	GCNGC	5 cut(s)	29, 93, 385, 547, 787
Bme1390I	CCNGG	1 cut(s)	202
BmgT120I	GGNCC	2 cut(s)	640, 832
BmiI	GGNNCC	3 cut(s)	183, 433, 775
BmrFI	CCNGG	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	716
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
Bpu10I	CCTNAGC	1 cut(s)	828
BpuEI	CTTGAG	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	202
BsaBI	GATNNNNATC	3 cut(s)	180, 196, 624
BsaHI	GRCGYC	1 cut(s)	432
BsaJI	CCNNGG	1 cut(s)	80
BsaWI	WCCGGW	3 cut(s)	184, 614, 952
Bsc4I	CCNNNNNNNGG	3 cut(s)	108, 145, 959
Bse3DI	GCAATG	1 cut(s)	780
Bse8I	GATNNNNATC	3 cut(s)	180, 196, 624
BseAI	TCCGGA	2 cut(s)	184, 614
BseDI	CCNNGG	1 cut(s)	80
BseJI	GATNNNNATC	3 cut(s)	180, 196, 624
BseLI	CCNNNNNNNGG	3 cut(s)	108, 145, 959
BseMI	GCAATG	1 cut(s)	780
BseMII	CTCAG	1 cut(s)	819
BseRI	GAGGAG	2 cut(s)	161, 900
BseXI	GCAGC	5 cut(s)	14, 78, 370, 532, 772
BseYI	CCCAGC	1 cut(s)	44
BsgI	GTGCAG	1 cut(s)	858
BshFI	GGCC	3 cut(s)	152, 642, 834
BshNI	GGYRCC	2 cut(s)	431, 773
BsiSI	CCGG	4 cut(s)	185, 201, 615, 953
BslFI	GGGAC	3 cut(s)	144, 259, 720
BslI	CCNNNNNNNGG	3 cut(s)	108, 145, 959
BsmFI	GGGAC	3 cut(s)	144, 259, 720
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	3 cut(s)	152, 642, 834
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp13I	TCCGGA	2 cut(s)	184, 614
Bsp19I	CCATGG	1 cut(s)	80
BspANI	GGCC	3 cut(s)	152, 642, 834
BspCNI	CTCAG	1 cut(s)	820
BspEI	TCCGGA	2 cut(s)	184, 614
BspLI	GGNNCC	3 cut(s)	183, 433, 775
BspMI	ACCTGC	1 cut(s)	17
BspPI	GGATC	7 cut(s)	92, 176, 189, 192, 199, 508, 944
BspT107I	GGYRCC	2 cut(s)	431, 773
BspTI	CTTAAG	1 cut(s)	337
BsrDI	GCAATG	1 cut(s)	780
BssECI	CCNNGG	1 cut(s)	80
BssNI	GRCGYC	1 cut(s)	432
BssT1I	CCWWGG	1 cut(s)	80
Bst4CI	ACNGT	2 cut(s)	715, 743
Bst6I	CTCTTC	1 cut(s)	265
BstACI	GRCGYC	1 cut(s)	432
BstAFI	CTTAAG	1 cut(s)	337
BstC8I	GCNNGC	3 cut(s)	77, 249, 406
BstDEI	CTNAG	1 cut(s)	828
BstDSI	CCRYGG	1 cut(s)	80
BstH2I	RGCGCY	1 cut(s)	435
BstHHI	GCGC	1 cut(s)	434
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 392, 401, 438
BstSCI	CCNGG	1 cut(s)	200
BstV1I	GCAGC	5 cut(s)	14, 78, 370, 532, 772
BstV2I	GAAGAC	1 cut(s)	716
BstX2I	RGATCY	5 cut(s)	84, 181, 197, 500, 841
BstXI	CCANNNNNNTGG	1 cut(s)	497
BstYI	RGATCY	5 cut(s)	84, 181, 197, 500, 841
BsuRI	GGCC	3 cut(s)	152, 642, 834
BtgI	CCRYGG	1 cut(s)	80
BtsI	GCAGTG	1 cut(s)	990
BtsIMutI	CAGTG	2 cut(s)	966, 990
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	3 cut(s)	77, 249, 406
CfoI	GCGC	1 cut(s)	434
Cfr13I	GGNCC	2 cut(s)	640, 832
CseI	GACGC	1 cut(s)	342
Csp6I	GTAC	4 cut(s)	682, 749, 774, 922
CviAII	CATG	5 cut(s)	81, 104, 428, 691, 754
CviQI	GTAC	4 cut(s)	682, 749, 774, 922
DdeI	CTNAG	1 cut(s)	828
DinI	GGCGCC	1 cut(s)	433
DraI	TTTAAA	1 cut(s)	462
Eam1104I	CTCTTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	80
Eco147I	AGGCCT	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	140
EcoT14I	CCWWGG	1 cut(s)	80
EcoT38I	GRGCYC	1 cut(s)	140
EgeI	GGCGCC	1 cut(s)	433
EheI	GGCGCC	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	80
FaeI	CATG	5 cut(s)	84, 107, 431, 694, 757
FaqI	GGGAC	3 cut(s)	144, 259, 720
FatI	CATG	5 cut(s)	80, 103, 427, 690, 753
Fnu4HI	GCNGC	5 cut(s)	28, 92, 384, 546, 786
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	5 cut(s)	28, 92, 384, 546, 786
FspBI	CTAG	3 cut(s)	108, 506, 530
GlaI	GCGC	1 cut(s)	433
GluI	GCNGC	5 cut(s)	28, 92, 384, 546, 786
GsaI	CCCAGC	1 cut(s)	48
HaeII	RGCGCY	1 cut(s)	435
HaeIII	GGCC	3 cut(s)	152, 642, 834
HapII	CCGG	4 cut(s)	185, 201, 615, 953
HgaI	GACGC	1 cut(s)	342
HhaI	GCGC	1 cut(s)	434
Hin1I	GRCGYC	1 cut(s)	432
Hin1II	CATG	5 cut(s)	84, 107, 431, 694, 757
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	3 cut(s)	611, 620, 675
HpaII	CCGG	4 cut(s)	185, 201, 615, 953
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	377, 949
Hpy188III	TCNNGA	6 cut(s)	179, 185, 195, 506, 615, 983
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	2 cut(s)	41, 787
HpyCH4III	ACNGT	2 cut(s)	715, 743
HpyCH4V	TGCA	3 cut(s)	316, 527, 839
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 392, 401, 438
HpyF3I	CTNAG	1 cut(s)	828
Hsp92I	GRCGYC	1 cut(s)	432
Hsp92II	CATG	5 cut(s)	84, 107, 431, 694, 757
HspAI	GCGC	1 cut(s)	432
KasI	GGCGCC	1 cut(s)	431
Kpn2I	TCCGGA	2 cut(s)	184, 614
KpnI	GGTACC	1 cut(s)	777
LmnI	GCTCC	3 cut(s)	256, 563, 913
Lsp1109I	GCAGC	5 cut(s)	14, 78, 370, 532, 772
MaeI	CTAG	3 cut(s)	108, 506, 530
MaeIII	GTNAC	1 cut(s)	962
MboII	GAAGA	4 cut(s)	234, 252, 721, 818
MflI	RGATCY	5 cut(s)	84, 181, 197, 500, 841
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	7 cut(s)	317, 351, 360, 423, 579, 635, 655
Mly113I	GGCGCC	1 cut(s)	432
MmeI	TCCRAC	1 cut(s)	556
MroI	TCCGGA	2 cut(s)	184, 614
MseI	TTAA	4 cut(s)	338, 461, 768, 903
MspCI	CTTAAG	1 cut(s)	337
MspI	CCGG	4 cut(s)	185, 201, 615, 953
MspR9I	CCNGG	1 cut(s)	202
Mva1269I	GAATGC	1 cut(s)	397
MwoI	GCNNNNNNNGC	4 cut(s)	33, 392, 401, 438
NarI	GGCGCC	1 cut(s)	432
NciI	CCSGG	1 cut(s)	202
NcoI	CCATGG	1 cut(s)	80
NlaIII	CATG	5 cut(s)	84, 107, 431, 694, 757
NlaIV	GGNNCC	3 cut(s)	183, 433, 775
PceI	AGGCCT	1 cut(s)	152
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	3 cut(s)	611, 620, 675
PkrI	GCNGC	5 cut(s)	29, 93, 385, 547, 787
PluTI	GGCGCC	1 cut(s)	435
PspFI	CCCAGC	1 cut(s)	44
PspN4I	GGNNCC	3 cut(s)	183, 433, 775
PspPI	GGNCC	2 cut(s)	640, 832
PsuI	RGATCY	5 cut(s)	84, 181, 197, 500, 841
RsaI	GTAC	4 cut(s)	683, 750, 775, 923
RsaNI	GTAC	4 cut(s)	682, 749, 774, 922
SaqAI	TTAA	4 cut(s)	338, 461, 768, 903
SatI	GCNGC	5 cut(s)	28, 92, 384, 546, 786
Sau96I	GGNCC	2 cut(s)	640, 832
ScrFI	CCNGG	1 cut(s)	202
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	7 cut(s)	11, 253, 328, 406, 447, 547, 779
SfoI	GGCGCC	1 cut(s)	433
SmlI	CTYRAG	2 cut(s)	165, 337
SmoI	CTYRAG	2 cut(s)	165, 337
Sse9I	AATT	7 cut(s)	317, 351, 360, 423, 579, 635, 655
SseBI	AGGCCT	1 cut(s)	152
SspDI	GGCGCC	1 cut(s)	431
SspMI	CTAG	3 cut(s)	108, 506, 530
StuI	AGGCCT	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	200
StyI	CCWWGG	1 cut(s)	80
TaaI	ACNGT	2 cut(s)	715, 743
TaqI	TCGA	2 cut(s)	69, 481
TasI	AATT	7 cut(s)	317, 351, 360, 423, 579, 635, 655
TatI	WGTACW	1 cut(s)	681
TfiI	GAWTC	3 cut(s)	611, 620, 675
Tru1I	TTAA	4 cut(s)	338, 461, 768, 903
Tru9I	TTAA	4 cut(s)	338, 461, 768, 903
TscAI	CASTG	2 cut(s)	973, 997
TseI	GCWGC	5 cut(s)	27, 91, 383, 545, 785
TspDTI	ATGAA	4 cut(s)	363, 416, 722, 769
TspRI	CASTG	2 cut(s)	973, 997
Vha464I	CTTAAG	1 cut(s)	337
XapI	RAATTY	2 cut(s)	351, 423
XbaI	TCTAGA	1 cut(s)	505
XspI	CTAG	3 cut(s)	108, 506, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.