Rroxscaffold_3G00230210

12-oxophytodienoate reductase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
14854920 .. 14859850
4931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00230210.1

Sequence Viewer

Length: 1416 bp
ATGGTCTCGAAATTGTTATATCATGATGGAAAGTTCTGCCTCACCGTGCCTTTTAATTTTCCAGCATATGTTAATCTTGTTGGGAACAAAATTATGAAGGGGGAGAAGATTTCGTTGAGTGTGAATATGGGTGCTGAAGCAGAAGTTTTATGCCAAACTACAAGCCATCCTCTTAAGGTGGTCGGGCGCCAAAGCGCAAGACTTGGAAGGTTTTCAAAAAAAGAAGTTATATTTATCATTGATATAAGTGGAAGTATGGCGGGAGACCCTCTTGAGAATGCAAAGAGTGCAGTATTGGCATCGCTTTCTAATCTCAACCGGGAAGATACTTTCAACATAATAGCTTTCAATAGAGAGGTGACTGATGATTTGAGTTGGTGGACGATTGTGGATCGTATTGTGAGCGGTTTTGGTGTGTATTGTGAAAGTGAAGACGCAGCGGGATTAGAGCTGATACTAATAATAAATCCTGTGCAAAGAGTTGTTTTAGCACCATTGACTAGACAGAGATCATATGGATATGTTCCCCAGCCACATGCCAACTTATATTACTCGCAGAGAACATCTAAAGGAGGTCTTCTCATAGCTGAAGCCGCTGGAGTTTCTGACACAGCACAAGGGTATCCAGATACTCCTGGTATATGGACAAAGGAGCAAGTTGAAGCATGGAAACCCATTGTCAATGCTGTACATGATAAAGGGGGTATCTTCTTCTGTCAGATTTGGCATGGGGGGAGGGTTTCAAATACTGGCTTTCAGCCAGATGGGCAAGCTCCAATCTCTTCTACTGACAAACTTGCTGCCAGGAATGCTATGGAAGCTGGCTTTGACGGTGTTGAAATTCATGGCGCCCATGGCTACCTTATCGATCAGTTTTTAAAAGATAAAGTAAATGATCGAACAGACCAATATGGTGGATCTCTAGAAAATCGTTGCCGATTTGCACTAGACATTGTTGAAGCTGCGGTCAATGAGATAGGAGCAGACAAAGTTGGAATTAGATTATCTCCATTTGCTGACTATATGGAATCCGGCGATTCTAATCCAAAGGAATTGGGCCTTTATCTTGTCAATTCCTTGAACAAATATGGAATCCTGTACTGCCACATGGTTGAGCCAAGAATGAAGACAGTTGAGGAAAAAAGTGAAAGTCCCCACAGTCTTGTACCCATGAGAAAGGCTTTTAATGGTACCTTCATTGCTGCTGGTGGTTTTGACAGGGAAGATGGGAACAATGCTGTGGCTGAGGGCCGTGCAGATCTTATTGCTTTTGGTCGTTGGTTCTTGGCTAATCCAGATTTGCCAAAGAGATTTGAGCTTAATGCTCCTCTAAATAAGTACGACAGAGATACATTCTACATATCTGATCCTGTTCTTGGTTACACTGATTATCCATTTCTTGACAGAACTGTTTAA

Protein Analysis

471

Amino Acids

52.04

Weight (kDa)

5.5

Isoelectric Point (pI)

26.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_FMN PF00724 159 - 260 4.6e-21 NADH:flavin oxidoreductase / NADH oxidase family
Oxidored_FMN PF00724 267 - 444 4.6e-49 NADH:flavin oxidoreductase / NADH oxidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1190
AccB1I GGYRCC 3 cut(s) 186, 848, 1190
AccBSI CCGCTC 1 cut(s) 405
AciI CCGC 5 cut(s) 260, 405, 440, 594, 965
AclWI GGATC 3 cut(s) 399, 925, 1361
AcsI RAATTY 1 cut(s) 840
AcuI CTGAAG 2 cut(s) 156, 609
AcyI GRCGYC 2 cut(s) 187, 849
AfaI GTAC 5 cut(s) 690, 1100, 1167, 1192, 1340
AfiI CCNNNNNNNGG 1 cut(s) 1376
AflII CTTAAG 1 cut(s) 173
AgsI TTSAA 8 cut(s) 216, 334, 349, 662, 744, 839, 959, 1081
AjnI CCWGG 2 cut(s) 634, 803
AluBI AGCT 7 cut(s) 344, 451, 587, 773, 821, 962, 1318
AluI AGCT 7 cut(s) 344, 451, 587, 773, 821, 962, 1318
Alw26I GTCTC 2 cut(s) 10, 258
AlwI GGATC 3 cut(s) 399, 925, 1361
AoxI GGCC 2 cut(s) 1057, 1249
ApeKI GCWGC 4 cut(s) 437, 800, 962, 1202
ApoI RAATTY 1 cut(s) 840
ArsI GACNNNNNNTTYG 2 cut(s) 352, 384
Asp700I GAANNNNTTC 1 cut(s) 211
Asp718I GGTACC 1 cut(s) 1190
AspLEI GCGC 3 cut(s) 189, 197, 851
AspS9I GGNCC 2 cut(s) 1057, 1249
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 2 cut(s) 34, 370
BaeI ACNNNNGTAYC 2 cut(s) 605, 638
BanI GGYRCC 3 cut(s) 186, 848, 1190
BbsI GAAGAC 3 cut(s) 438, 569, 1133
BbvCI CCTCAGC 1 cut(s) 1245
BbvI GCAGC 4 cut(s) 449, 787, 949, 1189
BccI CCATC 4 cut(s) 20, 174, 758, 1220
BceAI ACGGC 1 cut(s) 1236
BciT130I CCWGG 2 cut(s) 636, 805
BciVI GTATCC 1 cut(s) 633
BcnI CCSGG 1 cut(s) 320
BcoDI GTCTC 2 cut(s) 10, 258
BfaI CTAG 3 cut(s) 501, 923, 947
BfoI RGCGCY 2 cut(s) 190, 852
BfrI CTTAAG 1 cut(s) 173
BfuI GTATCC 1 cut(s) 633
BglI GCCNNNNNGGC 1 cut(s) 766
BglII AGATCT 1 cut(s) 1258
BisI GCNGC 5 cut(s) 438, 594, 801, 963, 1203
BlsI GCNGC 5 cut(s) 439, 595, 802, 964, 1204
Bme1390I CCNGG 3 cut(s) 320, 636, 805
BmgT120I GGNCC 2 cut(s) 1057, 1249
BmiI GGNNCC 3 cut(s) 188, 850, 1192
BmrFI CCNGG 3 cut(s) 320, 636, 805
BmsI GCATC 1 cut(s) 308
BpiI GAAGAC 3 cut(s) 438, 569, 1133
BplI GAGNNNNNCTC 2 cut(s) 564, 596
BpmI CTGGAG 1 cut(s) 618
Bpu10I CCTNAGC 1 cut(s) 1245
BpuEI CTTGAG 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 320
Bsa29I ATCGAT 1 cut(s) 867
BsaBI GATNNNNATC 1 cut(s) 1041
BsaHI GRCGYC 2 cut(s) 187, 849
BsaI GGTCTC 2 cut(s) 10, 258
BsaJI CCNNGG 1 cut(s) 853
Bsc4I CCNNNNNNNGG 1 cut(s) 1376
Bse1I ACTGG 1 cut(s) 754
Bse3DI GCAATG 1 cut(s) 1197
Bse8I GATNNNNATC 1 cut(s) 1041
BseBI CCWGG 2 cut(s) 636, 805
BseCI ATCGAT 1 cut(s) 867
BseDI CCNNGG 1 cut(s) 853
BseGI GGATG 1 cut(s) 166
BseJI GATNNNNATC 1 cut(s) 1041
BseLI CCNNNNNNNGG 1 cut(s) 1376
BseMI GCAATG 1 cut(s) 1197
BseMII CTCAG 1 cut(s) 1236
BseNI ACTGG 1 cut(s) 754
BseRI GAGGAG 1 cut(s) 1317
BseXI GCAGC 4 cut(s) 449, 787, 949, 1189
BseYI CCCAGC 1 cut(s) 528
BsgI GTGCAG 2 cut(s) 309, 1275
BshFI GGCC 2 cut(s) 1059, 1251
BshNI GGYRCC 3 cut(s) 186, 848, 1190
BshVI ATCGAT 1 cut(s) 867
BsiSI CCGG 2 cut(s) 319, 1032
BslFI GGGAC 1 cut(s) 1137
BslI CCNNNNNNNGG 1 cut(s) 1376
BsmAI GTCTC 2 cut(s) 10, 258
BsmFI GGGAC 1 cut(s) 1137
BsmI GAATGC 2 cut(s) 283, 814
BsnI GGCC 2 cut(s) 1059, 1251
Bso31I GGTCTC 2 cut(s) 10, 258
Bsp1407I TGTACA 1 cut(s) 688
Bsp143I GATC 7 cut(s) 391, 509, 868, 895, 917, 1258, 1366
Bsp19I CCATGG 1 cut(s) 853
BspACI CCGC 5 cut(s) 260, 405, 440, 594, 965
BspANI GGCC 2 cut(s) 1059, 1251
BspCNI CTCAG 1 cut(s) 1237
BspDI ATCGAT 1 cut(s) 867
BspHI TCATGA 1 cut(s) 22
BspLI GGNNCC 3 cut(s) 188, 850, 1192
BspPI GGATC 3 cut(s) 399, 925, 1361
BspT107I GGYRCC 3 cut(s) 186, 848, 1190
BspTI CTTAAG 1 cut(s) 173
BspTNI GGTCTC 2 cut(s) 10, 258
BsrBI CCGCTC 1 cut(s) 405
BsrDI GCAATG 1 cut(s) 1197
BsrGI TGTACA 1 cut(s) 688
BsrI ACTGG 1 cut(s) 754
BssECI CCNNGG 1 cut(s) 853
BssMI GATC 7 cut(s) 391, 509, 868, 895, 917, 1258, 1366
BssNI GRCGYC 2 cut(s) 187, 849
BssT1I CCWWGG 1 cut(s) 853
Bst2UI CCWGG 2 cut(s) 636, 805
Bst4CI ACNGT 5 cut(s) 46, 833, 1132, 1160, 1411
Bst6I CTCTTC 1 cut(s) 787
BstACI GRCGYC 2 cut(s) 187, 849
BstAFI CTTAAG 1 cut(s) 173
BstAPI GCANNNNNTGC 1 cut(s) 287
BstAUI TGTACA 1 cut(s) 688
BstC8I GCNNGC 2 cut(s) 771, 823
BstDEI CTNAG 1 cut(s) 1245
BstDSI CCRYGG 1 cut(s) 853
BstF5I GGATG 1 cut(s) 166
BstH2I RGCGCY 2 cut(s) 190, 852
BstHHI GCGC 3 cut(s) 189, 197, 851
BstKTI GATC 7 cut(s) 394, 512, 871, 898, 920, 1261, 1369
BstMAI GTCTC 2 cut(s) 10, 258
BstMBI GATC 7 cut(s) 391, 509, 868, 895, 917, 1258, 1366
BstMWI GCNNNNNNNGC 7 cut(s) 287, 296, 593, 766, 809, 818, 855
BstNI CCWGG 2 cut(s) 636, 805
BstNSI RCATGY 1 cut(s) 539
BstSCI CCNGG 3 cut(s) 318, 634, 803
BstV1I GCAGC 4 cut(s) 449, 787, 949, 1189
BstV2I GAAGAC 3 cut(s) 438, 569, 1133
BstX2I RGATCY 2 cut(s) 917, 1258
BstXI CCANNNNNNTGG 1 cut(s) 914
BstYI RGATCY 2 cut(s) 917, 1258
Bsu15I ATCGAT 1 cut(s) 867
BsuI GTATCC 1 cut(s) 633
BsuRI GGCC 2 cut(s) 1059, 1251
BsuTUI ATCGAT 1 cut(s) 867
BtgI CCRYGG 1 cut(s) 853
BtgZI GCGATG 1 cut(s) 285
BtsCI GGATG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 1383
Cac8I GCNNGC 2 cut(s) 771, 823
CciI TCATGA 1 cut(s) 22
CfoI GCGC 3 cut(s) 189, 197, 851
Cfr13I GGNCC 2 cut(s) 1057, 1249
ClaI ATCGAT 1 cut(s) 867
CseI GACGC 1 cut(s) 443
Csp6I GTAC 5 cut(s) 689, 1099, 1166, 1191, 1339
CviAII CATG 9 cut(s) 23, 536, 666, 692, 728, 845, 854, 1108, 1171
CviQI GTAC 5 cut(s) 689, 1099, 1166, 1191, 1339
DdeI CTNAG 1 cut(s) 1245
DinI GGCGCC 2 cut(s) 188, 850
DpnI GATC 7 cut(s) 393, 511, 870, 897, 919, 1260, 1368
DpnII GATC 7 cut(s) 391, 509, 868, 895, 917, 1258, 1366
DraI TTTAAA 1 cut(s) 879
Eam1104I CTCTTC 1 cut(s) 787
EarI CTCTTC 1 cut(s) 787
Eco130I CCWWGG 1 cut(s) 853
Eco31I GGTCTC 2 cut(s) 10, 258
Eco57I CTGAAG 2 cut(s) 156, 609
EcoRII CCWGG 2 cut(s) 634, 803
EcoT14I CCWWGG 1 cut(s) 853
EgeI GGCGCC 2 cut(s) 188, 850
EheI GGCGCC 2 cut(s) 188, 850
ErhI CCWWGG 1 cut(s) 853
FaeI CATG 9 cut(s) 26, 539, 669, 695, 731, 848, 857, 1111, 1174
FalI AAGNNNNNCTT 2 cut(s) 561, 593
FaqI GGGAC 1 cut(s) 1137
FatI CATG 9 cut(s) 22, 535, 665, 691, 727, 844, 853, 1107, 1170
FauI CCCGC 2 cut(s) 253, 433
FauNDI CATATG 2 cut(s) 67, 514
Fnu4HI GCNGC 5 cut(s) 438, 594, 801, 963, 1203
FokI GGATG 1 cut(s) 153
Fsp4HI GCNGC 5 cut(s) 438, 594, 801, 963, 1203
FspBI CTAG 3 cut(s) 501, 923, 947
GlaI GCGC 3 cut(s) 188, 196, 850
GluI GCNGC 5 cut(s) 438, 594, 801, 963, 1203
GsaI CCCAGC 1 cut(s) 532
GsuI CTGGAG 1 cut(s) 618
HaeII RGCGCY 2 cut(s) 190, 852
HaeIII GGCC 2 cut(s) 1059, 1251
HapII CCGG 2 cut(s) 319, 1032
HgaI GACGC 1 cut(s) 443
HhaI GCGC 3 cut(s) 189, 197, 851
Hin1I GRCGYC 2 cut(s) 187, 849
Hin1II CATG 9 cut(s) 26, 539, 669, 695, 731, 848, 857, 1111, 1174
Hin6I GCGC 3 cut(s) 187, 195, 849
HinP1I GCGC 3 cut(s) 187, 195, 849
HinfI GANTC 3 cut(s) 1028, 1037, 1092
HpaII CCGG 2 cut(s) 319, 1032
HphI GGTGA 2 cut(s) 34, 370
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 3 cut(s) 607, 720, 1366
Hpy188III TCNNGA 7 cut(s) 7, 23, 272, 626, 923, 1295, 1400
Hpy8I GTNNAC 1 cut(s) 381
HpyAV CCTTC 3 cut(s) 91, 201, 1204
HpyCH4III ACNGT 5 cut(s) 46, 833, 1132, 1160, 1411
HpyCH4V TGCA 5 cut(s) 281, 290, 475, 944, 1256
HpyF10VI GCNNNNNNNGC 7 cut(s) 287, 296, 593, 766, 809, 818, 855
HpyF3I CTNAG 1 cut(s) 1245
Hsp92I GRCGYC 2 cut(s) 187, 849
Hsp92II CATG 9 cut(s) 26, 539, 669, 695, 731, 848, 857, 1111, 1174
HspAI GCGC 3 cut(s) 187, 195, 849
KasI GGCGCC 2 cut(s) 186, 848
KpnI GGTACC 1 cut(s) 1194
Kzo9I GATC 7 cut(s) 391, 509, 868, 895, 917, 1258, 1366
LmnI GCTCC 4 cut(s) 652, 778, 980, 1330
Lsp1109I GCAGC 4 cut(s) 449, 787, 949, 1189
LweI GCATC 1 cut(s) 308
MaeI CTAG 3 cut(s) 501, 923, 947
MaeIII GTNAC 2 cut(s) 358, 1379
MalI GATC 7 cut(s) 393, 511, 870, 897, 919, 1260, 1368
MbiI CCGCTC 1 cut(s) 405
MboI GATC 7 cut(s) 391, 509, 868, 895, 917, 1258, 1366
MboII GAAGA 9 cut(s) 118, 335, 443, 569, 700, 703, 774, 1138, 1235
MflI RGATCY 2 cut(s) 917, 1258
MluCI AATT 7 cut(s) 11, 55, 90, 840, 996, 1052, 1072
Mly113I GGCGCC 2 cut(s) 187, 849
MmeI TCCRAC 1 cut(s) 973
MnlI CCTC 9 cut(s) 50, 180, 279, 349, 566, 729, 1129, 1240, 1338
MroXI GAANNNNTTC 1 cut(s) 211
MseI TTAA 7 cut(s) 54, 72, 174, 878, 1185, 1320, 1414
MspA1I CMGCKG 2 cut(s) 440, 596
MspCI CTTAAG 1 cut(s) 173
MspI CCGG 2 cut(s) 319, 1032
MspR9I CCNGG 3 cut(s) 320, 636, 805
Mva1269I GAATGC 2 cut(s) 283, 814
MvaI CCWGG 2 cut(s) 636, 805
MwoI GCNNNNNNNGC 7 cut(s) 287, 296, 593, 766, 809, 818, 855
NarI GGCGCC 2 cut(s) 187, 849
NciI CCSGG 1 cut(s) 320
NcoI CCATGG 1 cut(s) 853
NdeI CATATG 2 cut(s) 67, 514
NdeII GATC 7 cut(s) 391, 509, 868, 895, 917, 1258, 1366
NlaIII CATG 9 cut(s) 26, 539, 669, 695, 731, 848, 857, 1111, 1174
NlaIV GGNNCC 3 cut(s) 188, 850, 1192
NmuCI GTSAC 1 cut(s) 358
NspI RCATGY 1 cut(s) 539
PagI TCATGA 1 cut(s) 22
PctI GAATGC 2 cut(s) 283, 814
PdmI GAANNNNTTC 1 cut(s) 211
PfeI GAWTC 3 cut(s) 1028, 1037, 1092
PkrI GCNGC 5 cut(s) 439, 595, 802, 964, 1204
PluTI GGCGCC 2 cut(s) 190, 852
Psp6I CCWGG 2 cut(s) 634, 803
PspFI CCCAGC 1 cut(s) 528
PspGI CCWGG 2 cut(s) 634, 803
PspN4I GGNNCC 3 cut(s) 188, 850, 1192
PspPI GGNCC 2 cut(s) 1057, 1249
PsuI RGATCY 2 cut(s) 917, 1258
RsaI GTAC 5 cut(s) 690, 1100, 1167, 1192, 1340
RsaNI GTAC 5 cut(s) 689, 1099, 1166, 1191, 1339
SaqAI TTAA 7 cut(s) 54, 72, 174, 878, 1185, 1320, 1414
SatI GCNGC 5 cut(s) 438, 594, 801, 963, 1203
Sau3AI GATC 7 cut(s) 391, 509, 868, 895, 917, 1258, 1366
Sau96I GGNCC 2 cut(s) 1057, 1249
ScrFI CCNGG 3 cut(s) 320, 636, 805
SfaNI GCATC 1 cut(s) 308
SfoI GGCGCC 2 cut(s) 188, 850
SmlI CTYRAG 2 cut(s) 173, 272
SmoI CTYRAG 2 cut(s) 173, 272
Sse9I AATT 7 cut(s) 11, 55, 90, 840, 996, 1052, 1072
SsiI CCGC 5 cut(s) 260, 405, 440, 594, 965
SspDI GGCGCC 2 cut(s) 186, 848
SspMI CTAG 3 cut(s) 501, 923, 947
StyD4I CCNGG 3 cut(s) 318, 634, 803
StyI CCWWGG 1 cut(s) 853
TaaI ACNGT 5 cut(s) 46, 833, 1132, 1160, 1411
TaqI TCGA 3 cut(s) 8, 867, 898
TasI AATT 7 cut(s) 11, 55, 90, 840, 996, 1052, 1072
TatI WGTACW 2 cut(s) 688, 1098
TauI GCSGC 1 cut(s) 596
TfiI GAWTC 3 cut(s) 1028, 1037, 1092
Tru1I TTAA 7 cut(s) 54, 72, 174, 878, 1185, 1320, 1414
Tru9I TTAA 7 cut(s) 54, 72, 174, 878, 1185, 1320, 1414
TscAI CASTG 1 cut(s) 1390
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 4 cut(s) 437, 800, 962, 1202
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 4 cut(s) 110, 833, 1139, 1186
TspRI CASTG 1 cut(s) 1390
Vha464I CTTAAG 1 cut(s) 173
XapI RAATTY 1 cut(s) 840
XbaI TCTAGA 1 cut(s) 922
XceI RCATGY 1 cut(s) 539
XcmI CCANNNNNNNNNTGG 1 cut(s) 811
XmnI GAANNNNTTC 1 cut(s) 211
XspI CTAG 3 cut(s) 501, 923, 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.