Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8106358.1

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 606

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8106358.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

gctttgacggtgttgaaattcatggcgcccatggctaccttatcgatcagtttttaaaagataaagtaaatgatcgaacagaccaatatggtggatctctagaaaatcgttgccgatttgcactagacattgttgaagctgccgtcaatgagataggagcagacaaagttggaattagattatctccatttgctgactatatggaatccggagattctaatccaaaggaattgggcctttatcttgtcaattccttgaacaaatatggaatcctgtactgccacatggttgagccaagaatgaagacagttggggaaaaaagtgaaagtccccacagtcttgtacccatgagaaaggcttttaatggtaccttcattgctgctggtggttttgacagggaagatggga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

135

Amino Acids

14.95

Weight (kDa)

5.15

Isoelectric Point (pI)

25.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	367
AccB1I	GGYRCC	2 cut(s)	25, 367
AccIII	TCCGGA	1 cut(s)	208
AclWI	GGATC	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	17
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	3 cut(s)	277, 344, 369
AgsI	TTSAA	3 cut(s)	16, 136, 258
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
AlwI	GGATC	1 cut(s)	102
Aor13HI	TCCGGA	1 cut(s)	208
AoxI	GGCC	1 cut(s)	234
ApeKI	GCWGC	2 cut(s)	139, 379
ApoI	RAATTY	1 cut(s)	17
Asp718I	GGTACC	1 cut(s)	367
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	234
BanI	GGYRCC	2 cut(s)	25, 367
BbsI	GAAGAC	1 cut(s)	310
BbvI	GCAGC	2 cut(s)	126, 366
BccI	CCATC	1 cut(s)	397
BceAI	ACGGC	1 cut(s)	127
BfaI	CTAG	2 cut(s)	100, 124
BfoI	RGCGCY	1 cut(s)	29
BisI	GCNGC	2 cut(s)	140, 380
BlsI	GCNGC	2 cut(s)	141, 381
BmgT120I	GGNCC	1 cut(s)	234
BmiI	GGNNCC	2 cut(s)	27, 369
BpiI	GAAGAC	1 cut(s)	310
Bsa29I	ATCGAT	1 cut(s)	44
BsaBI	GATNNNNATC	1 cut(s)	218
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	30
BsaWI	WCCGGW	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	374
Bse8I	GATNNNNATC	1 cut(s)	218
BseAI	TCCGGA	1 cut(s)	208
BseCI	ATCGAT	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	30
BseJI	GATNNNNATC	1 cut(s)	218
BseMI	GCAATG	1 cut(s)	374
BseXI	GCAGC	2 cut(s)	126, 366
BshFI	GGCC	1 cut(s)	236
BshNI	GGYRCC	2 cut(s)	25, 367
BshVI	ATCGAT	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	314
BsmFI	GGGAC	1 cut(s)	314
BsnI	GGCC	1 cut(s)	236
Bsp13I	TCCGGA	1 cut(s)	208
Bsp143I	GATC	3 cut(s)	45, 72, 94
Bsp19I	CCATGG	1 cut(s)	30
BspANI	GGCC	1 cut(s)	236
BspDI	ATCGAT	1 cut(s)	44
BspEI	TCCGGA	1 cut(s)	208
BspLI	GGNNCC	2 cut(s)	27, 369
BspPI	GGATC	1 cut(s)	102
BspT107I	GGYRCC	2 cut(s)	25, 367
BsrDI	GCAATG	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	3 cut(s)	45, 72, 94
BssNI	GRCGYC	1 cut(s)	26
BssT1I	CCWWGG	1 cut(s)	30
Bst4CI	ACNGT	3 cut(s)	10, 309, 337
BstACI	GRCGYC	1 cut(s)	26
BstDSI	CCRYGG	1 cut(s)	30
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	3 cut(s)	48, 75, 97
BstMBI	GATC	3 cut(s)	45, 72, 94
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstV1I	GCAGC	2 cut(s)	126, 366
BstV2I	GAAGAC	1 cut(s)	310
BstX2I	RGATCY	1 cut(s)	94
BstXI	CCANNNNNNTGG	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	94
Bsu15I	ATCGAT	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	236
BsuTUI	ATCGAT	1 cut(s)	44
BtgI	CCRYGG	1 cut(s)	30
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	234
ClaI	ATCGAT	1 cut(s)	44
Csp6I	GTAC	3 cut(s)	276, 343, 368
CviAII	CATG	4 cut(s)	22, 31, 285, 348
CviJI	RGCY	5 cut(s)	35, 139, 236, 294, 358
CviKI_1	RGCY	5 cut(s)	35, 139, 236, 294, 358
CviQI	GTAC	3 cut(s)	276, 343, 368
DinI	GGCGCC	1 cut(s)	27
DpnI	GATC	3 cut(s)	47, 74, 96
DpnII	GATC	3 cut(s)	45, 72, 94
DraI	TTTAAA	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	30
EgeI	GGCGCC	1 cut(s)	27
EheI	GGCGCC	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	4 cut(s)	25, 34, 288, 351
FaiI	YATR	8 cut(s)	23, 32, 89, 200, 202, 266, 286, 349
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	4 cut(s)	21, 30, 284, 347
Fnu4HI	GCNGC	2 cut(s)	140, 380
Fsp4HI	GCNGC	2 cut(s)	140, 380
FspBI	CTAG	2 cut(s)	100, 124
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	2 cut(s)	140, 380
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	236
HapII	CCGG	1 cut(s)	209
HhaI	GCGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	4 cut(s)	25, 34, 288, 351
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HinfI	GANTC	3 cut(s)	205, 214, 269
HpaII	CCGG	1 cut(s)	209
Hpy188III	TCNNGA	2 cut(s)	100, 209
HpyAV	CCTTC	1 cut(s)	381
HpyCH4III	ACNGT	3 cut(s)	10, 309, 337
HpyCH4V	TGCA	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	4 cut(s)	25, 34, 288, 351
HspAI	GCGC	1 cut(s)	26
KasI	GGCGCC	1 cut(s)	25
Kpn2I	TCCGGA	1 cut(s)	208
KpnI	GGTACC	1 cut(s)	371
Kzo9I	GATC	3 cut(s)	45, 72, 94
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	4 cut(s)	222, 286, 368, 381
Lsp1109I	GCAGC	2 cut(s)	126, 366
MaeI	CTAG	2 cut(s)	100, 124
MalI	GATC	3 cut(s)	47, 74, 96
MboI	GATC	3 cut(s)	45, 72, 94
MboII	GAAGA	1 cut(s)	315
MflI	RGATCY	1 cut(s)	94
MluCI	AATT	4 cut(s)	17, 173, 229, 249
Mly113I	GGCGCC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	150
MroI	TCCGGA	1 cut(s)	208
MseI	TTAA	2 cut(s)	55, 362
MspI	CCGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	32
NarI	GGCGCC	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	3 cut(s)	45, 72, 94
NlaIII	CATG	4 cut(s)	25, 34, 288, 351
NlaIV	GGNNCC	2 cut(s)	27, 369
PfeI	GAWTC	3 cut(s)	205, 214, 269
PkrI	GCNGC	2 cut(s)	141, 381
PluTI	GGCGCC	1 cut(s)	29
PspN4I	GGNNCC	2 cut(s)	27, 369
PspPI	GGNCC	1 cut(s)	234
PsuI	RGATCY	1 cut(s)	94
RsaI	GTAC	3 cut(s)	277, 344, 369
RsaNI	GTAC	3 cut(s)	276, 343, 368
SaqAI	TTAA	2 cut(s)	55, 362
SatI	GCNGC	2 cut(s)	140, 380
Sau3AI	GATC	3 cut(s)	45, 72, 94
Sau96I	GGNCC	1 cut(s)	234
SetI	ASST	3 cut(s)	41, 141, 373
SfoI	GGCGCC	1 cut(s)	27
Sse9I	AATT	4 cut(s)	17, 173, 229, 249
SspDI	GGCGCC	1 cut(s)	25
SspMI	CTAG	2 cut(s)	100, 124
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	3 cut(s)	10, 309, 337
TaqI	TCGA	2 cut(s)	44, 75
TasI	AATT	4 cut(s)	17, 173, 229, 249
TatI	WGTACW	1 cut(s)	275
TfiI	GAWTC	3 cut(s)	205, 214, 269
Tru1I	TTAA	2 cut(s)	55, 362
Tru9I	TTAA	2 cut(s)	55, 362
TseI	GCWGC	2 cut(s)	139, 379
TspDTI	ATGAA	3 cut(s)	10, 316, 363
XapI	RAATTY	1 cut(s)	17
XbaI	TCTAGA	1 cut(s)	99
XspI	CTAG	2 cut(s)	100, 124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.