MD15G1400700.v1.1

12-oxophytodienoate reductase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
50171057 .. 50173317
2261 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1400700.v1.1.491

Sequence Viewer

Length: 1113 bp
ATGGCTAATCAAACTCAAGTAGGTGGTCCCATAAGCCCTCTCCTTACCCCATACAAACTTGGAAACTTCAATCTTTCTCATAGAGTTGTCTTAGCACCAATGGGTAGACAAAGATCATACGGACATGTTCCTCGGCCGCATGCGATCTTATATTACTCCCAGAGAACATCTAACGGGGGTCTTCTCATAACTGAAGCCACTGGAGTTTCTGACACAGCTCAAGGGTACACAGATACTCCCGGTATATGGACAAAGGAGCAAGTTGAAGCATGGAAACCCATTGTTGATGCTGTTCATGCTAAAGGCGGCATCTTCTTCTGTCAGATTTTGCATGTAGGGAGGGTTTCAAATACCGGATTTCAGCCAAATGGGCAAGCTCCAATCTCTTCTACTGAGAAGCGGGTACCATTAAATGGCATTGATGTTTCTGAATTCACGCCTCCAAGACGATTAAGGACAGATGAAATTCCACAAATTGTCAATGATTTTAGACTTGCTGCAAGGAATGCAATGGAAGCTGGCTTTGATGGAGTGGAAATTCATGGGGCCCATGGATACCTTATTGATCAGTTTACGAAAGATCAAGTGAATGATAGAACAGACCAATATGGCGGATCTACGGAGAATCGTTGTCGATTTGCTCTGGAAATTGTTGAAACTGTTGCTAACGAGATAGGAGCGGATAAAGTTGGAATTAGATTATCTCCATTTGCCAACTATATGGGATCAGGGGATTCAGACCCTGAAGCGTTGGGCCTTTATCTGGCCAATTCATTGAACAAGTACGGGATTGTGTACTGCCATATGGTTGAGCCGAGGATGAAGACAATTGGAGAAAAGAGTGATTGCCCCCAGAGTCTTGTACCCATGAGAAAGGCTTTTAATGGTACCTTCATTGCTGCTGGTGGTTATGACAAGGAAGAAGGGAACAATGGCGTGGCCGAGGGCCGTGCAGATCTTATTGCTTATGGCCGTATTTTCTTGGCGAATCCGGATTTGCCAAAGAGATTTGAGCTTAATGCTCCTCTAAACAAGTACAACAGAGAGACATTCTACGCGTTTGAACCGCTTATTGGCTACACTGATTATCCGTTCCTTGAAACCACTCCTTAG

Protein Analysis

371

Amino Acids

40.79

Weight (kDa)

5.94

Isoelectric Point (pI)

28.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_FMN PF00724 14 - 343 6.2e-84 NADH:flavin oxidoreductase / NADH oxidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 403, 887
AccB1I GGYRCC 2 cut(s) 403, 887
AccB7I CCANNNNNTGG 1 cut(s) 413
AccBSI CCGCTC 1 cut(s) 680
AccI GTMKAC 1 cut(s) 106
AccII CGCG 1 cut(s) 1058
AccIII TCCGGA 1 cut(s) 991
AciI CCGC 6 cut(s) 137, 306, 400, 612, 680, 1067
AclWI GGATC 2 cut(s) 622, 733
AcoI YGGCCR 4 cut(s) 134, 765, 939, 970
AcsI RAATTY 3 cut(s) 431, 465, 537
AcuI CTGAAG 2 cut(s) 213, 765
AfaI GTAC 7 cut(s) 227, 405, 785, 797, 864, 889, 1037
AfiI CCNNNNNNNGG 4 cut(s) 246, 413, 763, 1073
AflIII ACRYGT 2 cut(s) 124, 1056
AgsI TTSAA 7 cut(s) 70, 266, 348, 656, 778, 1064, 1100
AjuI GAANNNNNNNTTGG 2 cut(s) 1056, 1088
AluBI AGCT 4 cut(s) 218, 377, 518, 1015
AluI AGCT 4 cut(s) 218, 377, 518, 1015
Alw26I GTCTC 1 cut(s) 1040
AlwI GGATC 2 cut(s) 622, 733
AlwNI CAGNNNCTG 1 cut(s) 743
Aor13HI TCCGGA 1 cut(s) 991
AoxI GGCC 7 cut(s) 134, 546, 754, 765, 939, 946, 970
ApaI GGGCCC 1 cut(s) 550
ApeKI GCWGC 2 cut(s) 497, 899
ApoI RAATTY 3 cut(s) 431, 465, 537
Asp718I GGTACC 2 cut(s) 403, 887
AspS9I GGNCC 5 cut(s) 26, 546, 547, 754, 946
AsuC2I CCSGG 1 cut(s) 240
AvaII GGWCC 1 cut(s) 26
BaeGI GKGCMC 1 cut(s) 550
BalI TGGCCA 1 cut(s) 767
BanI GGYRCC 2 cut(s) 403, 887
BanII GRGCYC 1 cut(s) 550
BbsI GAAGAC 2 cut(s) 173, 830
BbvI GCAGC 2 cut(s) 484, 886
BccI CCATC 1 cut(s) 521
BceAI ACGGC 2 cut(s) 933, 957
BcgI CGANNNNNNTGC 2 cut(s) 932, 966
BciVI GTATCC 1 cut(s) 548
BclI TGATCA 1 cut(s) 565
BcnI CCSGG 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 1040
BfuI GTATCC 1 cut(s) 548
BglI GCCNNNNNGGC 1 cut(s) 370
BglII AGATCT 1 cut(s) 955
BisI GCNGC 4 cut(s) 137, 307, 498, 900
BlsI GCNGC 4 cut(s) 138, 308, 499, 901
Bme1390I CCNGG 1 cut(s) 240
Bme18I GGWCC 1 cut(s) 26
BmgT120I GGNCC 5 cut(s) 26, 546, 547, 754, 946
BmiI GGNNCC 5 cut(s) 28, 405, 547, 548, 889
BmrFI CCNGG 1 cut(s) 240
BmsI GCATC 2 cut(s) 277, 318
BpiI GAAGAC 2 cut(s) 173, 830
BpmI CTGGAG 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 204
BpuMI CCSGG 1 cut(s) 240
BsaJI CCNNGG 4 cut(s) 131, 550, 815, 942
BsaWI WCCGGW 2 cut(s) 353, 991
BsaXI ACNNNNNCTCC 2 cut(s) 220, 250
Bsc4I CCNNNNNNNGG 4 cut(s) 246, 413, 763, 1073
Bse1I ACTGG 1 cut(s) 205
Bse3DI GCAATG 2 cut(s) 516, 894
BseAI TCCGGA 1 cut(s) 991
BseDI CCNNGG 4 cut(s) 131, 550, 815, 942
BseGI GGATG 1 cut(s) 825
BseLI CCNNNNNNNGG 4 cut(s) 246, 413, 763, 1073
BseMI GCAATG 2 cut(s) 516, 894
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 1 cut(s) 1014
BseSI GKGCMC 1 cut(s) 550
BseX3I CGGCCG 1 cut(s) 134
BseXI GCAGC 2 cut(s) 484, 886
BsgI GTGCAG 1 cut(s) 972
Bsh1236I CGCG 1 cut(s) 1058
Bsh1285I CGRYCG 1 cut(s) 137
BshFI GGCC 7 cut(s) 136, 548, 756, 767, 941, 948, 972
BshNI GGYRCC 2 cut(s) 403, 887
BsiEI CGRYCG 1 cut(s) 137
BsiSI CCGG 3 cut(s) 240, 354, 992
BslFI GGGAC 1 cut(s) 12
BslI CCNNNNNNNGG 4 cut(s) 246, 413, 763, 1073
BsmAI GTCTC 1 cut(s) 1040
BsmFI GGGAC 1 cut(s) 12
BsmI GAATGC 1 cut(s) 511
BsnI GGCC 7 cut(s) 136, 548, 756, 767, 941, 948, 972
Bsp120I GGGCCC 1 cut(s) 546
Bsp1286I GDGCHC 1 cut(s) 550
Bsp13I TCCGGA 1 cut(s) 991
Bsp143I GATC 7 cut(s) 113, 144, 565, 580, 614, 725, 955
Bsp19I CCATGG 1 cut(s) 550
BspACI CCGC 6 cut(s) 137, 306, 400, 612, 680, 1067
BspANI GGCC 7 cut(s) 136, 548, 756, 767, 941, 948, 972
BspCNI CTCAG 1 cut(s) 385
BspEI TCCGGA 1 cut(s) 991
BspFNI CGCG 1 cut(s) 1058
BspLI GGNNCC 5 cut(s) 28, 405, 547, 548, 889
BspPI GGATC 2 cut(s) 622, 733
BspT107I GGYRCC 2 cut(s) 403, 887
BsrBI CCGCTC 1 cut(s) 680
BsrDI GCAATG 2 cut(s) 516, 894
BsrI ACTGG 1 cut(s) 205
BssECI CCNNGG 4 cut(s) 131, 550, 815, 942
BssMI GATC 7 cut(s) 113, 144, 565, 580, 614, 725, 955
BssT1I CCWWGG 1 cut(s) 550
Bst4CI ACNGT 1 cut(s) 661
Bst6I CTCTTC 1 cut(s) 391
BstAPI GCANNNNNTGC 1 cut(s) 506
BstC8I GCNNGC 3 cut(s) 141, 375, 520
BstDEI CTNAG 3 cut(s) 91, 393, 1110
BstDSI CCRYGG 1 cut(s) 550
BstF5I GGATG 1 cut(s) 825
BstFNI CGCG 1 cut(s) 1058
BstKTI GATC 7 cut(s) 116, 147, 568, 583, 617, 728, 958
BstMAI GTCTC 1 cut(s) 1040
BstMBI GATC 7 cut(s) 113, 144, 565, 580, 614, 725, 955
BstMCI CGRYCG 1 cut(s) 137
BstMWI GCNNNNNNNGC 4 cut(s) 296, 370, 506, 515
BstNSI RCATGY 3 cut(s) 128, 143, 335
BstSCI CCNGG 1 cut(s) 238
BstSLI GKGCMC 1 cut(s) 550
BstUI CGCG 1 cut(s) 1058
BstV1I GCAGC 2 cut(s) 484, 886
BstV2I GAAGAC 2 cut(s) 173, 830
BstX2I RGATCY 2 cut(s) 614, 955
BstXI CCANNNNNNTGG 1 cut(s) 721
BstYI RGATCY 2 cut(s) 614, 955
BstZI CGGCCG 1 cut(s) 134
BsuI GTATCC 1 cut(s) 548
BsuRI GGCC 7 cut(s) 136, 548, 756, 767, 941, 948, 972
BtgI CCRYGG 1 cut(s) 550
BtsCI GGATG 1 cut(s) 825
BtsIMutI CAGTG 2 cut(s) 198, 1080
Cac8I GCNNGC 3 cut(s) 141, 375, 520
CaiI CAGNNNCTG 1 cut(s) 743
Cfr13I GGNCC 5 cut(s) 26, 546, 547, 754, 946
Csp6I GTAC 7 cut(s) 226, 404, 784, 796, 863, 888, 1036
CviAII CATG 8 cut(s) 125, 140, 270, 296, 332, 542, 551, 868
CviQI GTAC 7 cut(s) 226, 404, 784, 796, 863, 888, 1036
DdeI CTNAG 3 cut(s) 91, 393, 1110
DpnI GATC 7 cut(s) 115, 146, 567, 582, 616, 727, 957
DpnII GATC 7 cut(s) 113, 144, 565, 580, 614, 725, 955
EaeI YGGCCR 4 cut(s) 134, 765, 939, 970
EagI CGGCCG 1 cut(s) 134
Eam1104I CTCTTC 1 cut(s) 391
EarI CTCTTC 1 cut(s) 391
EciI GGCGGA 1 cut(s) 627
EclXI CGGCCG 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 550
Eco24I GRGCYC 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 26
Eco52I CGGCCG 1 cut(s) 134
Eco57I CTGAAG 2 cut(s) 213, 765
EcoO109I RGGNCCY 1 cut(s) 546
EcoRI GAATTC 1 cut(s) 431
EcoT14I CCWWGG 1 cut(s) 550
EcoT38I GRGCYC 1 cut(s) 550
ErhI CCWWGG 1 cut(s) 550
FaeI CATG 8 cut(s) 128, 143, 273, 299, 335, 545, 554, 871
FaqI GGGAC 1 cut(s) 12
FatI CATG 8 cut(s) 124, 139, 269, 295, 331, 541, 550, 867
FauI CCCGC 1 cut(s) 393
FauNDI CATATG 1 cut(s) 804
FbaI TGATCA 1 cut(s) 565
FblI GTMKAC 1 cut(s) 106
Fnu4HI GCNGC 4 cut(s) 137, 307, 498, 900
FokI GGATG 1 cut(s) 832
FriOI GRGCYC 1 cut(s) 550
Fsp4HI GCNGC 4 cut(s) 137, 307, 498, 900
GluI GCNGC 4 cut(s) 137, 307, 498, 900
GsuI CTGGAG 1 cut(s) 222
HaeIII GGCC 7 cut(s) 136, 548, 756, 767, 941, 948, 972
HapII CCGG 3 cut(s) 240, 354, 992
Hin1II CATG 8 cut(s) 128, 143, 273, 299, 335, 545, 554, 871
HinfI GANTC 4 cut(s) 625, 734, 856, 988
HpaII CCGG 3 cut(s) 240, 354, 992
Hpy166II GTNNAC 4 cut(s) 107, 228, 573, 796
Hpy188I TCNGA 4 cut(s) 211, 324, 430, 739
Hpy188III TCNNGA 2 cut(s) 644, 992
Hpy8I GTNNAC 4 cut(s) 107, 228, 573, 796
HpyAV CCTTC 2 cut(s) 901, 917
HpyCH4III ACNGT 1 cut(s) 661
HpyCH4V TGCA 4 cut(s) 331, 500, 509, 953
HpyF10VI GCNNNNNNNGC 4 cut(s) 296, 370, 506, 515
HpyF3I CTNAG 3 cut(s) 91, 393, 1110
Hsp92II CATG 8 cut(s) 128, 143, 273, 299, 335, 545, 554, 871
Kpn2I TCCGGA 1 cut(s) 991
KpnI GGTACC 2 cut(s) 407, 891
Ksp22I TGATCA 1 cut(s) 565
Kzo9I GATC 7 cut(s) 113, 144, 565, 580, 614, 725, 955
LmnI GCTCC 4 cut(s) 256, 382, 677, 1027
Lsp1109I GCAGC 2 cut(s) 484, 886
LweI GCATC 2 cut(s) 277, 318
MalI GATC 7 cut(s) 115, 146, 567, 582, 616, 727, 957
MbiI CCGCTC 1 cut(s) 680
MboI GATC 7 cut(s) 113, 144, 565, 580, 614, 725, 955
MboII GAAGA 6 cut(s) 173, 304, 307, 378, 835, 932
MfeI CAATTG 1 cut(s) 828
MflI RGATCY 2 cut(s) 614, 955
MhlI GDGCHC 1 cut(s) 550
MlsI TGGCCA 1 cut(s) 767
MluCI AATT 8 cut(s) 431, 465, 474, 537, 648, 693, 769, 828
MluI ACGCGT 1 cut(s) 1056
MluNI TGGCCA 1 cut(s) 767
MlyI GAGTC 1 cut(s) 865
MmeI TCCRAC 1 cut(s) 670
MnlI CCTC 7 cut(s) 48, 141, 333, 450, 810, 937, 1035
Mox20I TGGCCA 1 cut(s) 767
MroI TCCGGA 1 cut(s) 991
MscI TGGCCA 1 cut(s) 767
MseI TTAA 4 cut(s) 410, 452, 882, 1017
Msp20I TGGCCA 1 cut(s) 767
MspI CCGG 3 cut(s) 240, 354, 992
MspR9I CCNGG 1 cut(s) 240
MunI CAATTG 1 cut(s) 828
Mva1269I GAATGC 1 cut(s) 511
MvnI CGCG 1 cut(s) 1058
MwoI GCNNNNNNNGC 4 cut(s) 296, 370, 506, 515
NciI CCSGG 1 cut(s) 240
NcoI CCATGG 1 cut(s) 550
NdeI CATATG 1 cut(s) 804
NdeII GATC 7 cut(s) 113, 144, 565, 580, 614, 725, 955
NlaIII CATG 8 cut(s) 128, 143, 273, 299, 335, 545, 554, 871
NlaIV GGNNCC 5 cut(s) 28, 405, 547, 548, 889
NmeAIII GCCGAG 3 cut(s) 112, 840, 967
NspI RCATGY 3 cut(s) 128, 143, 335
PaeI GCATGC 1 cut(s) 143
PciI ACATGT 1 cut(s) 124
PctI GAATGC 1 cut(s) 511
PfeI GAWTC 3 cut(s) 625, 734, 988
PflMI CCANNNNNTGG 1 cut(s) 413
PkrI GCNGC 4 cut(s) 138, 308, 499, 901
PleI GAGTC 1 cut(s) 864
PpsI GAGTC 1 cut(s) 864
PscI ACATGT 1 cut(s) 124
PspN4I GGNNCC 5 cut(s) 28, 405, 547, 548, 889
PspOMI GGGCCC 1 cut(s) 546
PspPI GGNCC 5 cut(s) 26, 546, 547, 754, 946
PstNI CAGNNNCTG 1 cut(s) 743
PsuI RGATCY 2 cut(s) 614, 955
RsaI GTAC 7 cut(s) 227, 405, 785, 797, 864, 889, 1037
RsaNI GTAC 7 cut(s) 226, 404, 784, 796, 863, 888, 1036
SaqAI TTAA 4 cut(s) 410, 452, 882, 1017
SatI GCNGC 4 cut(s) 137, 307, 498, 900
Sau3AI GATC 7 cut(s) 113, 144, 565, 580, 614, 725, 955
Sau96I GGNCC 5 cut(s) 26, 546, 547, 754, 946
SchI GAGTC 1 cut(s) 865
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 1 cut(s) 550
SetI ASST 7 cut(s) 25, 220, 379, 520, 561, 893, 1017
SfaNI GCATC 2 cut(s) 277, 318
SinI GGWCC 1 cut(s) 26
SmlI CTYRAG 2 cut(s) 15, 219
SmoI CTYRAG 2 cut(s) 15, 219
SphI GCATGC 1 cut(s) 143
Sse9I AATT 8 cut(s) 431, 465, 474, 537, 648, 693, 769, 828
SsiI CCGC 6 cut(s) 137, 306, 400, 612, 680, 1067
StyD4I CCNGG 1 cut(s) 238
StyI CCWWGG 1 cut(s) 550
TaaI ACNGT 1 cut(s) 661
TaqI TCGA 1 cut(s) 634
TasI AATT 8 cut(s) 431, 465, 474, 537, 648, 693, 769, 828
TatI WGTACW 2 cut(s) 795, 1035
TauI GCSGC 2 cut(s) 139, 309
TfiI GAWTC 3 cut(s) 625, 734, 988
Tru1I TTAA 4 cut(s) 410, 452, 882, 1017
Tru9I TTAA 4 cut(s) 410, 452, 882, 1017
TscAI CASTG 2 cut(s) 205, 1087
TseI GCWGC 2 cut(s) 497, 899
TspDTI ATGAA 6 cut(s) 284, 477, 530, 762, 836, 883
TspGWI ACGGA 3 cut(s) 135, 635, 1080
TspRI CASTG 2 cut(s) 205, 1087
Van91I CCANNNNNTGG 1 cut(s) 413
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 3 cut(s) 431, 465, 537
XceI RCATGY 3 cut(s) 128, 143, 335
XmiI GTMKAC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.