Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002541.1

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Reverse (-)

201062 .. 205165

Gene Structure 4104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002541.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

atgaactccgacgaagccgacgtcacccaaaacaccaatttggtcaaaactcgattaaatcgaaaactaacaataccaatgtgtagagctcgaagagtagaagaacgatccgactcatccaactccgaacccagcccaaagccacggtgcagccaccccatgcagccaagaaggacgaacaacctccatgcaatttttacctctcctgctaaccaagctcccacacttcctcttctcactccttacaagttgggaaagtttgatctttctcacagagttgttttagcgccattgactagacagagatcatatggaaatgttccccagccacctgccatcttatattactctcagagagcatccaaagggggtcttgtcataactgaagccactggagtttctgacacagcacaagggtatccagatactcctggtatatggtcaaaagagcaagttgaagcatggaaacccattgtcaatgctgtacatgctaaagggggtgtcttcttctgtcagatttggcatgcaggaagggtttcaaacagtgactttcaaccagatgggcaagctccaatctcttctactgacaagtccctcgccccccaaataggatctaatggtattgatgttacgcaattcacacctccaagacggttaaggacggatgaaattcctcaaattgtcaatgatttcagacttgctgcaaggaatgccatggaagccggctttgatggggttgaaattcatggcgccaatggctaccttatcgatcagtttttaaaagatcaagtaaatgatcgaacagaccaatatggtggatctctagaaaagcgttgccaatttgcgttagacattgttgaagttgttgtcaacgagataggagcaggtaaagttggaattagattttctccatttgccaactatatggaatccggagattctaacccaaaggaattgggcctttatctagtcaattccttgaacaaatatggaatgctgtactgccacatggttgagccaagaatgaagacatttggagaaaaaactgactgtcccctgagtcttgtacccatgagaaaggcttttaatggtaccttcattgctgctggtggttttgacagggaagatgggaacaatgctgtggctgagggccgtgcagatcttattgcttttggtcgttggttcttggctaatccagatttgccaaagagatttgagcttaatgctcctctaaataagtacgtcagagatacattctacatatctgatcccgttcttggttacactgattatccatttcttgactgcactgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

438

Amino Acids

48.62

Weight (kDa)

7.59

Isoelectric Point (pI)

34.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	340
AatII	GACGTC	1 cut(s)	24
Acc36I	ACCTGC	2 cut(s)	340, 875
Acc65I	GGTACC	1 cut(s)	1091
AccB1I	GGYRCC	2 cut(s)	749, 1091
AccIII	TCCGGA	1 cut(s)	932
AclWI	GGATC	4 cut(s)	102, 619, 826, 1262
AcsI	RAATTY	2 cut(s)	669, 741
AcuI	CTGAAG	1 cut(s)	405
AcyI	GRCGYC	2 cut(s)	21, 750
AfaI	GTAC	5 cut(s)	486, 1001, 1068, 1093, 1241
AfiI	CCNNNNNNNGG	2 cut(s)	608, 1277
AgsI	TTSAA	6 cut(s)	458, 540, 554, 740, 860, 982
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	4 cut(s)	89, 218, 569, 1219
AluI	AGCT	4 cut(s)	89, 218, 569, 1219
Alw21I	GWGCWC	1 cut(s)	91
AlwI	GGATC	4 cut(s)	102, 619, 826, 1262
Aor13HI	TCCGGA	1 cut(s)	932
AoxI	GGCC	2 cut(s)	958, 1150
ApeKI	GCWGC	4 cut(s)	150, 163, 701, 1103
ApoI	RAATTY	2 cut(s)	669, 741
ArsI	GACNNNNNNTTYG	1 cut(s)	38
Asp700I	GAANNNNTTC	1 cut(s)	535
Asp718I	GGTACC	1 cut(s)	1091
AspLEI	GCGC	2 cut(s)	289, 752
AspS9I	GGNCC	2 cut(s)	958, 1150
AsuHPI	GGTGA	1 cut(s)	16
BaeI	ACNNNNGTAYC	2 cut(s)	401, 434
BanI	GGYRCC	2 cut(s)	749, 1091
BanII	GRGCYC	1 cut(s)	91
BbsI	GAAGAC	2 cut(s)	496, 1034
Bbv12I	GWGCWC	1 cut(s)	91
BbvCI	CCTCAGC	1 cut(s)	1146
BbvI	GCAGC	4 cut(s)	162, 175, 688, 1090
BccI	CCATC	4 cut(s)	344, 554, 725, 1121
BceAI	ACGGC	1 cut(s)	1137
BciT130I	CCWGG	1 cut(s)	432
BciVI	GTATCC	1 cut(s)	429
BfaI	CTAG	3 cut(s)	297, 824, 968
BfoI	RGCGCY	2 cut(s)	290, 753
BfuAI	ACCTGC	2 cut(s)	340, 875
BfuI	GTATCC	1 cut(s)	429
BglII	AGATCT	1 cut(s)	1159
BisI	GCNGC	4 cut(s)	151, 164, 702, 1104
BlsI	GCNGC	4 cut(s)	152, 165, 703, 1105
Bme1390I	CCNGG	1 cut(s)	432
BmgT120I	GGNCC	2 cut(s)	958, 1150
BmiI	GGNNCC	2 cut(s)	751, 1093
BmrFI	CCNGG	1 cut(s)	432
BmsI	GCATC	1 cut(s)	368
BpiI	GAAGAC	2 cut(s)	496, 1034
BpmI	CTGGAG	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	1146
Bsa29I	ATCGAT	1 cut(s)	768
BsaHI	GRCGYC	2 cut(s)	21, 750
BsaJI	CCNNGG	2 cut(s)	143, 714
BsaWI	WCCGGW	1 cut(s)	932
Bsc4I	CCNNNNNNNGG	2 cut(s)	608, 1277
Bse118I	RCCGGY	1 cut(s)	722
Bse1I	ACTGG	1 cut(s)	397
Bse3DI	GCAATG	1 cut(s)	1098
BseAI	TCCGGA	1 cut(s)	932
BseBI	CCWGG	1 cut(s)	432
BseCI	ATCGAT	1 cut(s)	768
BseDI	CCNNGG	2 cut(s)	143, 714
BseGI	GGATG	3 cut(s)	116, 359, 670
BseLI	CCNNNNNNNGG	2 cut(s)	608, 1277
BseMI	GCAATG	1 cut(s)	1098
BseMII	CTCAG	3 cut(s)	365, 1049, 1137
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	1 cut(s)	1218
BseXI	GCAGC	4 cut(s)	162, 175, 688, 1090
BseYI	CCCAGC	2 cut(s)	131, 324
BsgI	GTGCAG	3 cut(s)	169, 1176, 1291
BshFI	GGCC	2 cut(s)	960, 1152
BshNI	GGYRCC	2 cut(s)	749, 1091
BshVI	ATCGAT	1 cut(s)	768
BsiHKAI	GWGCWC	1 cut(s)	91
BsiSI	CCGG	2 cut(s)	723, 933
BslFI	GGGAC	2 cut(s)	577, 1038
BslI	CCNNNNNNNGG	2 cut(s)	608, 1277
BsmFI	GGGAC	2 cut(s)	577, 1038
BsmI	GAATGC	2 cut(s)	715, 999
BsnI	GGCC	2 cut(s)	960, 1152
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp13I	TCCGGA	1 cut(s)	932
Bsp1407I	TGTACA	1 cut(s)	484
Bsp19I	CCATGG	1 cut(s)	714
BspANI	GGCC	2 cut(s)	960, 1152
BspCNI	CTCAG	3 cut(s)	364, 1050, 1138
BspDI	ATCGAT	1 cut(s)	768
BspEI	TCCGGA	1 cut(s)	932
BspLI	GGNNCC	2 cut(s)	751, 1093
BspMI	ACCTGC	2 cut(s)	340, 875
BspPI	GGATC	4 cut(s)	102, 619, 826, 1262
BspT107I	GGYRCC	2 cut(s)	749, 1091
BsrDI	GCAATG	1 cut(s)	1098
BsrFI	RCCGGY	1 cut(s)	722
BsrGI	TGTACA	1 cut(s)	484
BsrI	ACTGG	1 cut(s)	397
BssAI	RCCGGY	1 cut(s)	722
BssECI	CCNNGG	2 cut(s)	143, 714
BssNI	GRCGYC	2 cut(s)	21, 750
BssT1I	CCWWGG	1 cut(s)	714
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	4 cut(s)	147, 545, 654, 1052
Bst6I	CTCTTC	3 cut(s)	88, 237, 583
BstACI	GRCGYC	2 cut(s)	21, 750
BstAPI	GCANNNNNTGC	1 cut(s)	710
BstAUI	TGTACA	1 cut(s)	484
BstC8I	GCNNGC	3 cut(s)	525, 567, 724
BstDEI	CTNAG	3 cut(s)	351, 1058, 1146
BstDSI	CCRYGG	2 cut(s)	143, 714
BstF5I	GGATG	3 cut(s)	116, 359, 670
BstH2I	RGCGCY	2 cut(s)	290, 753
BstHHI	GCGC	2 cut(s)	289, 752
BstMWI	GCNNNNNNNGC	5 cut(s)	215, 488, 710, 719, 756
BstNI	CCWGG	1 cut(s)	432
BstNSI	RCATGY	2 cut(s)	491, 527
BstSCI	CCNGG	1 cut(s)	430
BstV1I	GCAGC	4 cut(s)	162, 175, 688, 1090
BstV2I	GAAGAC	2 cut(s)	496, 1034
BstX2I	RGATCY	3 cut(s)	611, 818, 1159
BstXI	CCANNNNNNTGG	2 cut(s)	815, 925
BstYI	RGATCY	3 cut(s)	611, 818, 1159
Bsu15I	ATCGAT	1 cut(s)	768
BsuI	GTATCC	1 cut(s)	429
BsuRI	GGCC	2 cut(s)	960, 1152
BsuTUI	ATCGAT	1 cut(s)	768
BtgI	CCRYGG	2 cut(s)	143, 714
BtsCI	GGATG	3 cut(s)	116, 359, 670
BtsI	GCAGTG	1 cut(s)	1308
BtsIMutI	CAGTG	4 cut(s)	390, 550, 1284, 1308
BveI	ACCTGC	2 cut(s)	340, 875
Cac8I	GCNNGC	3 cut(s)	525, 567, 724
CfoI	GCGC	2 cut(s)	289, 752
Cfr10I	RCCGGY	1 cut(s)	722
Cfr13I	GGNCC	2 cut(s)	958, 1150
ClaI	ATCGAT	1 cut(s)	768
Csp6I	GTAC	5 cut(s)	485, 1000, 1067, 1092, 1240
CviAII	CATG	9 cut(s)	160, 188, 462, 488, 524, 715, 746, 1009, 1072
CviQI	GTAC	5 cut(s)	485, 1000, 1067, 1092, 1240
DdeI	CTNAG	3 cut(s)	351, 1058, 1146
DinI	GGCGCC	1 cut(s)	751
DraI	TTTAAA	1 cut(s)	780
Eam1104I	CTCTTC	3 cut(s)	88, 237, 583
EarI	CTCTTC	3 cut(s)	88, 237, 583
Ecl136II	GAGCTC	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	714
Eco24I	GRGCYC	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	405
EcoICRI	GAGCTC	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	714
EcoT38I	GRGCYC	1 cut(s)	91
EgeI	GGCGCC	1 cut(s)	751
EheI	GGCGCC	1 cut(s)	751
ErhI	CCWWGG	1 cut(s)	714
FaeI	CATG	9 cut(s)	163, 191, 465, 491, 527, 718, 749, 1012, 1075
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	2 cut(s)	577, 1038
FatI	CATG	9 cut(s)	159, 187, 461, 487, 523, 714, 745, 1008, 1071
FauNDI	CATATG	1 cut(s)	310
Fnu4HI	GCNGC	4 cut(s)	151, 164, 702, 1104
FokI	GGATG	3 cut(s)	103, 346, 677
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	4 cut(s)	151, 164, 702, 1104
FspBI	CTAG	3 cut(s)	297, 824, 968
GlaI	GCGC	2 cut(s)	288, 751
GluI	GCNGC	4 cut(s)	151, 164, 702, 1104
GsaI	CCCAGC	2 cut(s)	135, 328
GsuI	CTGGAG	1 cut(s)	414
HaeII	RGCGCY	2 cut(s)	290, 753
HaeIII	GGCC	2 cut(s)	960, 1152
HapII	CCGG	2 cut(s)	723, 933
HhaI	GCGC	2 cut(s)	289, 752
Hin1I	GRCGYC	2 cut(s)	21, 750
Hin1II	CATG	9 cut(s)	163, 191, 465, 491, 527, 718, 749, 1012, 1075
Hin6I	GCGC	2 cut(s)	287, 750
HinP1I	GCGC	2 cut(s)	287, 750
HincII	GTYRAC	1 cut(s)	871
HindII	GTYRAC	1 cut(s)	871
HinfI	GANTC	4 cut(s)	113, 929, 938, 1060
HpaII	CCGG	2 cut(s)	723, 933
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	871
Hpy188I	TCNGA	9 cut(s)	10, 112, 127, 354, 403, 516, 695, 1247, 1267
Hpy188III	TCNNGA	5 cut(s)	422, 824, 933, 1196, 1301
Hpy8I	GTNNAC	1 cut(s)	871
Hpy99I	CGWCG	2 cut(s)	14, 23
HpyAV	CCTTC	3 cut(s)	165, 525, 1105
HpyCH4III	ACNGT	4 cut(s)	147, 545, 654, 1052
HpyCH4IV	ACGT	2 cut(s)	21, 1242
HpyCH4V	TGCA	7 cut(s)	150, 163, 191, 527, 704, 1157, 1308
HpyF10VI	GCNNNNNNNGC	5 cut(s)	215, 488, 710, 719, 756
HpyF3I	CTNAG	3 cut(s)	351, 1058, 1146
HpySE526I	ACGT	2 cut(s)	21, 1242
Hsp92I	GRCGYC	2 cut(s)	21, 750
Hsp92II	CATG	9 cut(s)	163, 191, 465, 491, 527, 718, 749, 1012, 1075
HspAI	GCGC	2 cut(s)	287, 750
KasI	GGCGCC	1 cut(s)	749
Kpn2I	TCCGGA	1 cut(s)	932
KpnI	GGTACC	1 cut(s)	1095
KroI	GCCGGC	1 cut(s)	722
KroNI	GCCGGC	1 cut(s)	724
LmnI	GCTCC	4 cut(s)	223, 574, 881, 1231
Lsp1109I	GCAGC	4 cut(s)	162, 175, 688, 1090
LweI	GCATC	1 cut(s)	368
MaeI	CTAG	3 cut(s)	297, 824, 968
MaeII	ACGT	2 cut(s)	21, 1242
MaeIII	GTNAC	4 cut(s)	22, 545, 628, 1280
MboII	GAAGA	8 cut(s)	105, 113, 224, 496, 499, 570, 1039, 1136
MflI	RGATCY	3 cut(s)	611, 818, 1159
MhlI	GDGCHC	1 cut(s)	91
Mly113I	GGCGCC	1 cut(s)	750
MlyI	GAGTC	2 cut(s)	107, 1069
MmeI	TCCRAC	4 cut(s)	33, 135, 144, 874
MnlI	CCTC	8 cut(s)	194, 211, 240, 605, 654, 684, 1141, 1239
MroI	TCCGGA	1 cut(s)	932
MroNI	GCCGGC	1 cut(s)	722
MroXI	GAANNNNTTC	1 cut(s)	535
MseI	TTAA	5 cut(s)	56, 656, 779, 1086, 1221
MspI	CCGG	2 cut(s)	723, 933
MspR9I	CCNGG	1 cut(s)	432
Mva1269I	GAATGC	2 cut(s)	715, 999
MvaI	CCWGG	1 cut(s)	432
MwoI	GCNNNNNNNGC	5 cut(s)	215, 488, 710, 719, 756
NaeI	GCCGGC	1 cut(s)	724
NarI	GGCGCC	1 cut(s)	750
NcoI	CCATGG	1 cut(s)	714
NdeI	CATATG	1 cut(s)	310
NgoMIV	GCCGGC	1 cut(s)	722
NlaIII	CATG	9 cut(s)	163, 191, 465, 491, 527, 718, 749, 1012, 1075
NlaIV	GGNNCC	2 cut(s)	751, 1093
NmuCI	GTSAC	2 cut(s)	22, 545
NspI	RCATGY	2 cut(s)	491, 527
PaeI	GCATGC	1 cut(s)	527
PaqCI	CACCTGC	1 cut(s)	340
PcsI	WCGNNNNNNNCGW	2 cut(s)	18, 58
PctI	GAATGC	2 cut(s)	715, 999
PdiI	GCCGGC	1 cut(s)	724
PdmI	GAANNNNTTC	1 cut(s)	535
PfeI	GAWTC	2 cut(s)	929, 938
PkrI	GCNGC	4 cut(s)	152, 165, 703, 1105
PleI	GAGTC	2 cut(s)	107, 1068
PluTI	GGCGCC	1 cut(s)	753
PpsI	GAGTC	2 cut(s)	107, 1068
Psp124BI	GAGCTC	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	430
PspFI	CCCAGC	2 cut(s)	131, 324
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	2 cut(s)	751, 1093
PspPI	GGNCC	2 cut(s)	958, 1150
PsuI	RGATCY	3 cut(s)	611, 818, 1159
RsaI	GTAC	5 cut(s)	486, 1001, 1068, 1093, 1241
RsaNI	GTAC	5 cut(s)	485, 1000, 1067, 1092, 1240
SacI	GAGCTC	1 cut(s)	91
SaqAI	TTAA	5 cut(s)	56, 656, 779, 1086, 1221
SatI	GCNGC	4 cut(s)	151, 164, 702, 1104
Sau96I	GGNCC	2 cut(s)	958, 1150
SchI	GAGTC	2 cut(s)	107, 1069
ScrFI	CCNGG	1 cut(s)	432
SduI	GDGCHC	1 cut(s)	91
SfaNI	GCATC	1 cut(s)	368
SfoI	GGCGCC	1 cut(s)	751
SphI	GCATGC	1 cut(s)	527
SspDI	GGCGCC	1 cut(s)	749
SspMI	CTAG	3 cut(s)	297, 824, 968
SstI	GAGCTC	1 cut(s)	91
StyD4I	CCNGG	1 cut(s)	430
StyI	CCWWGG	1 cut(s)	714
TaaI	ACNGT	4 cut(s)	147, 545, 654, 1052
TaiI	ACGT	2 cut(s)	24, 1245
TaqI	TCGA	5 cut(s)	52, 61, 91, 768, 799
TatI	WGTACW	2 cut(s)	484, 999
TfiI	GAWTC	2 cut(s)	929, 938
Tru1I	TTAA	5 cut(s)	56, 656, 779, 1086, 1221
Tru9I	TTAA	5 cut(s)	56, 656, 779, 1086, 1221
TscAI	CASTG	4 cut(s)	397, 550, 1291, 1315
TseFI	GTSAC	2 cut(s)	22, 545
TseI	GCWGC	4 cut(s)	150, 163, 701, 1103
Tsp45I	GTSAC	2 cut(s)	22, 545
TspDTI	ATGAA	5 cut(s)	17, 681, 734, 1040, 1087
TspGWI	ACGGA	1 cut(s)	677
TspRI	CASTG	4 cut(s)	397, 550, 1291, 1315
XapI	RAATTY	2 cut(s)	669, 741
XbaI	TCTAGA	1 cut(s)	823
XceI	RCATGY	2 cut(s)	491, 527
XmnI	GAANNNNTTC	1 cut(s)	535
XspI	CTAG	3 cut(s)	297, 824, 968
ZraI	GACGTC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.