Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Forward (+)

53809785 .. 53813531

Gene Structure 3747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20638

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCTAACCAAGCTCCCACACTTCCTCTTCTCACTCCTTACAAGTTGGGAAAGTTTGATCTTTCTCACAGAGTTGTTTTACCGGCATTGACTAGACAGAGATCATATGGATATGTTCCCCAGCCACCTGCCATCTTATATTACTCTCAGAGAGCATCCAAAGGGGGTCTTCTCATAACTGAAGCCACTGGAGTTTCTGACACAGCACAAGGGTATCCAGATACCCCTGGTATATGGTCAAAGGAGCAAGTTGAAGCATGGAAACCCATTGTCAATGCTGTATATGCTAAAGGGGGTGTCTTCTTCTGTCAGATTTGGCATGTGGGGAGGGTTTCAAATAGTGGCTTTCAGCCAGATGGGCAAGCACCAATCTCTTCTACTGACAAGTCCCTAACACCCCAAATAGGATCTAATGGTATTGATGTTATGCAATTCACACCTCCAAGACGATTAAGGGCAGATGAAATTCCTCAAATTGTCAATGATTTCAGACTTGCTGCAAGGAATGCTATGGAAGCTGGCTTTGATGGAGTTGAAATTCATGGCTCCAGTGGCTTCCTTATCGATCAGTTTTTAAAAGATCAAGTAAATGATCGAACAGACCAATATGGTGGATCTCTAGAAAGGCGTTGCCGATTTGCACTAGACATTGTTGAAGCTGTTGTCAACGAGATAGGAGCAGATAAAGTTGGAATTAAATTATCTCCATTTGCCAACTATATGGAATCCGGAGATTCTAAACCAAAGGAATTGGGCCTTTATCTAGTCAATTCCTTGAACAAATATGGAATTCTGTACTGCCAAATGATTGAGCCAAGAATGAAGACACTTGGAGACAAAATTGAATGTCCCCACAGTCTTGTACCCATGAGAAAGGCTTTTAATGGTACTTTCATTGCTGTTGGCGGTTTTGACAGGGAAGATGGGAACAATGCTGTGGCTGAAGACAGTGCCGATCTTGTTGCTTTTGGTCGTTGGTTCTTGGCTAATCCAGATTTGCCAAAGAGATTTGAGCTTAATGCTCCTCTAAGTAAGTACATCAGAGATACATTCTACATATCTGATCCGGTTCTTGGTTACACTGATTATCCATTTCTTGACAGCACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

370

Amino Acids

40.91

Weight (kDa)

5.7

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	10 - 341	2.4e-79	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	136
Acc36I	ACCTGC	1 cut(s)	136
AccIII	TCCGGA	1 cut(s)	728
AciI	CCGC	1 cut(s)	906
AclWI	GGATC	3 cut(s)	415, 622, 1058
AcsI	RAATTY	3 cut(s)	465, 537, 789
AcuI	CTGAAG	2 cut(s)	201, 963
AfaI	GTAC	4 cut(s)	797, 864, 889, 1037
AfiI	CCNNNNNNNGG	2 cut(s)	404, 1073
AgsI	TTSAA	6 cut(s)	254, 336, 536, 656, 778, 845
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	4 cut(s)	14, 518, 659, 1015
AluI	AGCT	4 cut(s)	14, 518, 659, 1015
Alw26I	GTCTC	1 cut(s)	828
AlwI	GGATC	3 cut(s)	415, 622, 1058
Aor13HI	TCCGGA	1 cut(s)	728
AoxI	GGCC	1 cut(s)	754
ApeKI	GCWGC	1 cut(s)	497
ApoI	RAATTY	3 cut(s)	465, 537, 789
AspS9I	GGNCC	1 cut(s)	754
BaeI	ACNNNNGTAYC	2 cut(s)	197, 230
BbsI	GAAGAC	4 cut(s)	161, 292, 830, 951
BbvI	GCAGC	1 cut(s)	484
BccI	CCATC	4 cut(s)	140, 350, 521, 917
BcgI	CGANNNNNNTGC	2 cut(s)	944, 978
BciT130I	CCWGG	1 cut(s)	228
BciVI	GTATCC	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	828
BfaI	CTAG	4 cut(s)	93, 620, 644, 764
BfuAI	ACCTGC	1 cut(s)	136
BfuI	GTATCC	1 cut(s)	225
BglI	GCCNNNNNGGC	1 cut(s)	358
BisI	GCNGC	1 cut(s)	498
BlsI	GCNGC	1 cut(s)	499
Bme1390I	CCNGG	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	754
BmiI	GGNNCC	1 cut(s)	547
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	164
BpiI	GAAGAC	4 cut(s)	161, 292, 830, 951
BpmI	CTGGAG	2 cut(s)	210, 532
Bsa29I	ATCGAT	1 cut(s)	564
BsaJI	CCNNGG	1 cut(s)	226
BsaWI	WCCGGW	2 cut(s)	728, 1066
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 1073
Bse118I	RCCGGY	1 cut(s)	82
Bse1I	ACTGG	2 cut(s)	193, 549
Bse3DI	GCAATG	1 cut(s)	894
BseAI	TCCGGA	1 cut(s)	728
BseBI	CCWGG	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	564
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	1 cut(s)	155
BseLI	CCNNNNNNNGG	2 cut(s)	404, 1073
BseMI	GCAATG	1 cut(s)	894
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	2 cut(s)	193, 549
BseRI	GAGGAG	1 cut(s)	1014
BseXI	GCAGC	1 cut(s)	484
BseYI	CCCAGC	1 cut(s)	120
BshFI	GGCC	1 cut(s)	756
BshVI	ATCGAT	1 cut(s)	564
BsiSI	CCGG	3 cut(s)	83, 729, 1067
BslFI	GGGAC	2 cut(s)	373, 834
BslI	CCNNNNNNNGG	2 cut(s)	404, 1073
BsmAI	GTCTC	1 cut(s)	828
BsmFI	GGGAC	2 cut(s)	373, 834
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	1 cut(s)	756
Bsp13I	TCCGGA	1 cut(s)	728
Bsp143I	GATC	9 cut(s)	58, 101, 407, 565, 580, 592, 614, 955, 1063
BspACI	CCGC	1 cut(s)	906
BspANI	GGCC	1 cut(s)	756
BspCNI	CTCAG	1 cut(s)	160
BspDI	ATCGAT	1 cut(s)	564
BspEI	TCCGGA	1 cut(s)	728
BspLI	GGNNCC	1 cut(s)	547
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	3 cut(s)	415, 622, 1058
BsrDI	GCAATG	1 cut(s)	894
BsrFI	RCCGGY	1 cut(s)	82
BsrI	ACTGG	2 cut(s)	193, 549
BssAI	RCCGGY	1 cut(s)	82
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	9 cut(s)	58, 101, 407, 565, 580, 592, 614, 955, 1063
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	857, 950
Bst6I	CTCTTC	2 cut(s)	33, 379
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstC8I	GCNNGC	2 cut(s)	363, 520
BstDEI	CTNAG	2 cut(s)	147, 1028
BstF5I	GGATG	1 cut(s)	155
BstKTI	GATC	9 cut(s)	61, 104, 410, 568, 583, 595, 617, 958, 1066
BstMAI	GTCTC	1 cut(s)	828
BstMBI	GATC	9 cut(s)	58, 101, 407, 565, 580, 592, 614, 955, 1063
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 284, 358, 506, 515, 552
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	484
BstV2I	GAAGAC	4 cut(s)	161, 292, 830, 951
BstX2I	RGATCY	2 cut(s)	407, 614
BstXI	CCANNNNNNTGG	2 cut(s)	611, 721
BstYI	RGATCY	2 cut(s)	407, 614
Bsu15I	ATCGAT	1 cut(s)	564
BsuI	GTATCC	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	756
BsuTUI	ATCGAT	1 cut(s)	564
BtsCI	GGATG	1 cut(s)	155
BtsI	GCAGTG	1 cut(s)	1104
BtsIMutI	CAGTG	5 cut(s)	186, 556, 955, 1080, 1104
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	2 cut(s)	363, 520
Cfr10I	RCCGGY	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	754
ClaI	ATCGAT	1 cut(s)	564
Csp6I	GTAC	4 cut(s)	796, 863, 888, 1036
CviAII	CATG	4 cut(s)	258, 320, 542, 868
CviQI	GTAC	4 cut(s)	796, 863, 888, 1036
DdeI	CTNAG	2 cut(s)	147, 1028
DpnI	GATC	9 cut(s)	60, 103, 409, 567, 582, 594, 616, 957, 1065
DpnII	GATC	9 cut(s)	58, 101, 407, 565, 580, 592, 614, 955, 1063
DraI	TTTAAA	1 cut(s)	576
Eam1104I	CTCTTC	2 cut(s)	33, 379
EarI	CTCTTC	2 cut(s)	33, 379
Eco57I	CTGAAG	2 cut(s)	201, 963
EcoRI	GAATTC	1 cut(s)	789
EcoRII	CCWGG	1 cut(s)	226
FaeI	CATG	4 cut(s)	261, 323, 545, 871
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FaqI	GGGAC	2 cut(s)	373, 834
FatI	CATG	4 cut(s)	257, 319, 541, 867
FauNDI	CATATG	1 cut(s)	106
Fnu4HI	GCNGC	1 cut(s)	498
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	1 cut(s)	498
FspBI	CTAG	4 cut(s)	93, 620, 644, 764
GluI	GCNGC	1 cut(s)	498
GsaI	CCCAGC	1 cut(s)	124
GsuI	CTGGAG	2 cut(s)	210, 532
HaeIII	GGCC	1 cut(s)	756
HapII	CCGG	3 cut(s)	83, 729, 1067
Hin1II	CATG	4 cut(s)	261, 323, 545, 871
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HinfI	GANTC	2 cut(s)	725, 734
HpaII	CCGG	3 cut(s)	83, 729, 1067
Hpy166II	GTNNAC	1 cut(s)	667
Hpy188I	TCNGA	6 cut(s)	150, 199, 312, 491, 1043, 1063
Hpy188III	TCNNGA	5 cut(s)	218, 620, 729, 992, 1097
Hpy8I	GTNNAC	1 cut(s)	667
HpyCH4III	ACNGT	2 cut(s)	857, 950
HpyCH4V	TGCA	3 cut(s)	430, 500, 641
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 284, 358, 506, 515, 552
HpyF3I	CTNAG	2 cut(s)	147, 1028
Hsp92II	CATG	4 cut(s)	261, 323, 545, 871
Kpn2I	TCCGGA	1 cut(s)	728
Kzo9I	GATC	9 cut(s)	58, 101, 407, 565, 580, 592, 614, 955, 1063
LmnI	GCTCC	5 cut(s)	19, 244, 551, 677, 1027
Lsp1109I	GCAGC	1 cut(s)	484
LweI	GCATC	1 cut(s)	164
MaeI	CTAG	4 cut(s)	93, 620, 644, 764
MaeIII	GTNAC	1 cut(s)	1076
MalI	GATC	9 cut(s)	60, 103, 409, 567, 582, 594, 616, 957, 1065
MboI	GATC	9 cut(s)	58, 101, 407, 565, 580, 592, 614, 955, 1063
MboII	GAAGA	8 cut(s)	20, 161, 292, 295, 366, 835, 932, 956
MflI	RGATCY	2 cut(s)	407, 614
MmeI	TCCRAC	1 cut(s)	670
MnlI	CCTC	5 cut(s)	36, 321, 450, 480, 1035
MroI	TCCGGA	1 cut(s)	728
MseI	TTAA	5 cut(s)	452, 575, 696, 882, 1017
MspI	CCGG	3 cut(s)	83, 729, 1067
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	6 cut(s)	11, 284, 358, 506, 515, 552
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	9 cut(s)	58, 101, 407, 565, 580, 592, 614, 955, 1063
NlaIII	CATG	4 cut(s)	261, 323, 545, 871
NlaIV	GGNNCC	1 cut(s)	547
NspI	RCATGY	1 cut(s)	323
PaqCI	CACCTGC	1 cut(s)	136
PctI	GAATGC	1 cut(s)	511
PfeI	GAWTC	2 cut(s)	725, 734
PkrI	GCNGC	1 cut(s)	499
Psp6I	CCWGG	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	547
PspPI	GGNCC	1 cut(s)	754
PsuI	RGATCY	2 cut(s)	407, 614
RsaI	GTAC	4 cut(s)	797, 864, 889, 1037
RsaNI	GTAC	4 cut(s)	796, 863, 888, 1036
SaqAI	TTAA	5 cut(s)	452, 575, 696, 882, 1017
SatI	GCNGC	1 cut(s)	498
Sau3AI	GATC	9 cut(s)	58, 101, 407, 565, 580, 592, 614, 955, 1063
Sau96I	GGNCC	1 cut(s)	754
ScrFI	CCNGG	1 cut(s)	228
SetI	ASST	6 cut(s)	16, 130, 442, 520, 661, 1017
SfaNI	GCATC	1 cut(s)	164
SsiI	CCGC	1 cut(s)	906
SspMI	CTAG	4 cut(s)	93, 620, 644, 764
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	2 cut(s)	857, 950
TaqI	TCGA	2 cut(s)	564, 595
TatI	WGTACW	2 cut(s)	795, 1035
TfiI	GAWTC	2 cut(s)	725, 734
Tru1I	TTAA	5 cut(s)	452, 575, 696, 882, 1017
Tru9I	TTAA	5 cut(s)	452, 575, 696, 882, 1017
TscAI	CASTG	5 cut(s)	193, 556, 955, 1087, 1111
TseI	GCWGC	1 cut(s)	497
TspDTI	ATGAA	4 cut(s)	477, 530, 836, 883
TspRI	CASTG	5 cut(s)	193, 556, 955, 1087, 1111
XapI	RAATTY	3 cut(s)	465, 537, 789
XbaI	TCTAGA	1 cut(s)	619
XceI	RCATGY	1 cut(s)	323
XspI	CTAG	4 cut(s)	93, 620, 644, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.