Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Forward (+)

56054266 .. 56056801

Gene Structure 2536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG428900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGGAGAGTTTGATCTTTCTCACAGAATTGTTTTAGCACCATTGACTAGACAGAGATCATATGGATATGTTCCCCAGCCACATGCCAAGTTATATTACTCGCAGAGAACATCTAAAGGAGGTCTTCTCATAGCTGAATCCGCTGGAGTTTCTGACACAGCACAAGGGTATCCAGATACTCCTGGTATATGGACAAAGGAGCAAGTTGAAGCATGGAAACCCATTGTCAATGCTGTACATGATAAAGGGGGTATCTTCTTCTGTCAGATTTGGCATGGGGGGAGGGTTTCAAATACTGGCTTTCAGCCAGATGGGCAAGCTCCAATCTCTTCTACTGACAAGTGCCTAACCCCCAAAATAAGATCTAATGGTATTGATGTTATGCAATTCACACCTCCAAGACGCTTAAGGACAGATGAAATTCCTCAAATTGTCAATGATTTCAGACTTGCTGCGAGGAATGCTATGGAAGCTGGCTTTGACGGTGTTGAAATTCATGGTGCCCATGGCTACCTTATCGATCAGTTTTTAAAAGATAAAGTAAATGATCGAACAGACCAATATGGTGGATCTCTAGAAAATCGTTGCCGATTTGCACTAGACATTGTTGAAGCTGCTGTCAATGAGATTGGAGCAGACAAAGTTGGAATTAGATTATCTCCATTTGCTGACTATATGGAATCCGGAGATTCTAATCCAAAGGAATTGGGCCTTTATCTTGTCAATTCGTTGAACAAATATGGAATCCTGTACTGCCACATGGTTGAGCCAAGAATGAAGACAGTTGAGGAAAAAAGTGAAAGTCCCCACAGTCTTGTACCCATGAGAAAGGCTTTTAATGGTACCTTCATTGCTGCTGGTGGTTTTGACAGGGAAGATGGGAACAATGCTGTGGTTGAGGGCCGTGCAGATCTTATTGGTTTTGGTCGTTGGTTCTTGGCTAATCCAGATTTGCCAAAGAGATTTGAGCTTAATGCTCCTCTAAATAAGTACGACAGAGATACATTCTACATATCTGATCCCGTTCTTGGTTACACTGATTATCCATTTCTTGACAGCACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

355

Amino Acids

39.57

Weight (kDa)

5.68

Isoelectric Point (pI)

31.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	2 - 328	1.1e-82	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	842
AccB1I	GGYRCC	2 cut(s)	500, 842
AccIII	TCCGGA	1 cut(s)	683
AciI	CCGC	1 cut(s)	141
AclWI	GGATC	2 cut(s)	577, 1013
AcsI	RAATTY	2 cut(s)	420, 492
AfaI	GTAC	5 cut(s)	237, 752, 819, 844, 992
AfiI	CCNNNNNNNGG	1 cut(s)	1028
AflII	CTTAAG	1 cut(s)	406
AgsI	TTSAA	5 cut(s)	209, 291, 491, 611, 733
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	5 cut(s)	134, 320, 473, 614, 970
AluI	AGCT	5 cut(s)	134, 320, 473, 614, 970
AlwI	GGATC	2 cut(s)	577, 1013
Aor13HI	TCCGGA	1 cut(s)	683
AoxI	GGCC	2 cut(s)	709, 901
ApeKI	GCWGC	3 cut(s)	452, 614, 854
ApoI	RAATTY	2 cut(s)	420, 492
Asp718I	GGTACC	1 cut(s)	842
AspS9I	GGNCC	2 cut(s)	709, 901
BaeGI	GKGCMC	1 cut(s)	505
BaeI	ACNNNNGTAYC	2 cut(s)	152, 185
BanI	GGYRCC	2 cut(s)	500, 842
BbsI	GAAGAC	2 cut(s)	116, 785
BbvI	GCAGC	3 cut(s)	439, 601, 841
BccI	CCATC	2 cut(s)	305, 872
BceAI	ACGGC	1 cut(s)	888
BciT130I	CCWGG	1 cut(s)	183
BciVI	GTATCC	1 cut(s)	180
BfaI	CTAG	3 cut(s)	48, 575, 599
BfrI	CTTAAG	1 cut(s)	406
BfuI	GTATCC	1 cut(s)	180
BglI	GCCNNNNNGGC	1 cut(s)	313
BglII	AGATCT	2 cut(s)	362, 910
BisI	GCNGC	3 cut(s)	453, 615, 855
BlsI	GCNGC	3 cut(s)	454, 616, 856
Bme1390I	CCNGG	1 cut(s)	183
BmgT120I	GGNCC	2 cut(s)	709, 901
BmiI	GGNNCC	2 cut(s)	502, 844
BmrFI	CCNGG	1 cut(s)	183
BpiI	GAAGAC	2 cut(s)	116, 785
BplI	GAGNNNNNCTC	2 cut(s)	111, 143
BpmI	CTGGAG	1 cut(s)	165
Bsa29I	ATCGAT	1 cut(s)	519
BsaBI	GATNNNNATC	1 cut(s)	693
BsaJI	CCNNGG	1 cut(s)	505
BsaWI	WCCGGW	1 cut(s)	683
Bsc4I	CCNNNNNNNGG	1 cut(s)	1028
Bse1I	ACTGG	1 cut(s)	301
Bse3DI	GCAATG	1 cut(s)	849
Bse8I	GATNNNNATC	1 cut(s)	693
BseAI	TCCGGA	1 cut(s)	683
BseBI	CCWGG	1 cut(s)	183
BseCI	ATCGAT	1 cut(s)	519
BseDI	CCNNGG	1 cut(s)	505
BseJI	GATNNNNATC	1 cut(s)	693
BseLI	CCNNNNNNNGG	1 cut(s)	1028
BseMI	GCAATG	1 cut(s)	849
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	969
BseSI	GKGCMC	1 cut(s)	505
BseXI	GCAGC	3 cut(s)	439, 601, 841
BseYI	CCCAGC	1 cut(s)	75
BsgI	GTGCAG	1 cut(s)	927
BshFI	GGCC	2 cut(s)	711, 903
BshNI	GGYRCC	2 cut(s)	500, 842
BshVI	ATCGAT	1 cut(s)	519
BsiSI	CCGG	1 cut(s)	684
BslFI	GGGAC	1 cut(s)	789
BslI	CCNNNNNNNGG	1 cut(s)	1028
BsmFI	GGGAC	1 cut(s)	789
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	2 cut(s)	711, 903
Bsp1286I	GDGCHC	1 cut(s)	505
Bsp13I	TCCGGA	1 cut(s)	683
Bsp1407I	TGTACA	1 cut(s)	235
Bsp143I	GATC	8 cut(s)	13, 56, 362, 520, 547, 569, 910, 1018
Bsp19I	CCATGG	1 cut(s)	505
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	2 cut(s)	711, 903
BspDI	ATCGAT	1 cut(s)	519
BspEI	TCCGGA	1 cut(s)	683
BspLI	GGNNCC	2 cut(s)	502, 844
BspPI	GGATC	2 cut(s)	577, 1013
BspT107I	GGYRCC	2 cut(s)	500, 842
BspTI	CTTAAG	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	849
BsrGI	TGTACA	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	505
BssMI	GATC	8 cut(s)	13, 56, 362, 520, 547, 569, 910, 1018
BssT1I	CCWWGG	1 cut(s)	505
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	3 cut(s)	485, 784, 812
Bst6I	CTCTTC	1 cut(s)	334
BstAFI	CTTAAG	1 cut(s)	406
BstAUI	TGTACA	1 cut(s)	235
BstC8I	GCNNGC	2 cut(s)	318, 475
BstDSI	CCRYGG	1 cut(s)	505
BstKTI	GATC	8 cut(s)	16, 59, 365, 523, 550, 572, 913, 1021
BstMBI	GATC	8 cut(s)	13, 56, 362, 520, 547, 569, 910, 1018
BstMWI	GCNNNNNNNGC	4 cut(s)	140, 313, 461, 470
BstNI	CCWGG	1 cut(s)	183
BstNSI	RCATGY	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	181
BstSLI	GKGCMC	1 cut(s)	505
BstV1I	GCAGC	3 cut(s)	439, 601, 841
BstV2I	GAAGAC	2 cut(s)	116, 785
BstX2I	RGATCY	3 cut(s)	362, 569, 910
BstXI	CCANNNNNNTGG	1 cut(s)	566
BstYI	RGATCY	3 cut(s)	362, 569, 910
Bsu15I	ATCGAT	1 cut(s)	519
BsuI	GTATCC	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	711, 903
BsuTUI	ATCGAT	1 cut(s)	519
BtgI	CCRYGG	1 cut(s)	505
BtsI	GCAGTG	1 cut(s)	1059
BtsIMutI	CAGTG	2 cut(s)	1035, 1059
Cac8I	GCNNGC	2 cut(s)	318, 475
Cfr13I	GGNCC	2 cut(s)	709, 901
ClaI	ATCGAT	1 cut(s)	519
CseI	GACGC	1 cut(s)	411
Csp6I	GTAC	5 cut(s)	236, 751, 818, 843, 991
CviAII	CATG	8 cut(s)	83, 213, 239, 275, 497, 506, 760, 823
CviQI	GTAC	5 cut(s)	236, 751, 818, 843, 991
DpnI	GATC	8 cut(s)	15, 58, 364, 522, 549, 571, 912, 1020
DpnII	GATC	8 cut(s)	13, 56, 362, 520, 547, 569, 910, 1018
DraI	TTTAAA	1 cut(s)	531
Eam1104I	CTCTTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	505
EcoRII	CCWGG	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	505
ErhI	CCWWGG	1 cut(s)	505
FaeI	CATG	8 cut(s)	86, 216, 242, 278, 500, 509, 763, 826
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FaqI	GGGAC	1 cut(s)	789
FatI	CATG	8 cut(s)	82, 212, 238, 274, 496, 505, 759, 822
FauNDI	CATATG	1 cut(s)	61
Fnu4HI	GCNGC	3 cut(s)	453, 615, 855
Fsp4HI	GCNGC	3 cut(s)	453, 615, 855
FspBI	CTAG	3 cut(s)	48, 575, 599
GluI	GCNGC	3 cut(s)	453, 615, 855
GsaI	CCCAGC	1 cut(s)	79
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	711, 903
HapII	CCGG	1 cut(s)	684
HgaI	GACGC	1 cut(s)	411
Hin1II	CATG	8 cut(s)	86, 216, 242, 278, 500, 509, 763, 826
HinfI	GANTC	4 cut(s)	137, 680, 689, 744
HpaII	CCGG	1 cut(s)	684
Hpy188I	TCNGA	4 cut(s)	154, 267, 446, 1018
Hpy188III	TCNNGA	5 cut(s)	173, 575, 684, 947, 1052
HpyAV	CCTTC	1 cut(s)	856
HpyCH4III	ACNGT	3 cut(s)	485, 784, 812
HpyCH4V	TGCA	3 cut(s)	385, 596, 908
HpyF10VI	GCNNNNNNNGC	4 cut(s)	140, 313, 461, 470
Hsp92II	CATG	8 cut(s)	86, 216, 242, 278, 500, 509, 763, 826
Kpn2I	TCCGGA	1 cut(s)	683
KpnI	GGTACC	1 cut(s)	846
Kzo9I	GATC	8 cut(s)	13, 56, 362, 520, 547, 569, 910, 1018
LmnI	GCTCC	4 cut(s)	199, 325, 632, 982
Lsp1109I	GCAGC	3 cut(s)	439, 601, 841
MaeI	CTAG	3 cut(s)	48, 575, 599
MaeIII	GTNAC	1 cut(s)	1031
MalI	GATC	8 cut(s)	15, 58, 364, 522, 549, 571, 912, 1020
MboI	GATC	8 cut(s)	13, 56, 362, 520, 547, 569, 910, 1018
MboII	GAAGA	6 cut(s)	116, 247, 250, 321, 790, 887
MflI	RGATCY	3 cut(s)	362, 569, 910
MhlI	GDGCHC	1 cut(s)	505
MluCI	AATT	8 cut(s)	27, 386, 420, 429, 492, 648, 704, 724
MmeI	TCCRAC	1 cut(s)	625
MnlI	CCTC	8 cut(s)	113, 276, 405, 435, 450, 781, 892, 990
MroI	TCCGGA	1 cut(s)	683
MseI	TTAA	4 cut(s)	407, 530, 837, 972
MspA1I	CMGCKG	1 cut(s)	143
MspCI	CTTAAG	1 cut(s)	406
MspI	CCGG	1 cut(s)	684
MspR9I	CCNGG	1 cut(s)	183
Mva1269I	GAATGC	1 cut(s)	466
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	4 cut(s)	140, 313, 461, 470
NcoI	CCATGG	1 cut(s)	505
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	8 cut(s)	13, 56, 362, 520, 547, 569, 910, 1018
NlaIII	CATG	8 cut(s)	86, 216, 242, 278, 500, 509, 763, 826
NlaIV	GGNNCC	2 cut(s)	502, 844
NspI	RCATGY	1 cut(s)	86
PctI	GAATGC	1 cut(s)	466
PfeI	GAWTC	4 cut(s)	137, 680, 689, 744
PkrI	GCNGC	3 cut(s)	454, 616, 856
Psp6I	CCWGG	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	502, 844
PspPI	GGNCC	2 cut(s)	709, 901
PsuI	RGATCY	3 cut(s)	362, 569, 910
RsaI	GTAC	5 cut(s)	237, 752, 819, 844, 992
RsaNI	GTAC	5 cut(s)	236, 751, 818, 843, 991
SaqAI	TTAA	4 cut(s)	407, 530, 837, 972
SatI	GCNGC	3 cut(s)	453, 615, 855
Sau3AI	GATC	8 cut(s)	13, 56, 362, 520, 547, 569, 910, 1018
Sau96I	GGNCC	2 cut(s)	709, 901
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	1 cut(s)	505
SetI	ASST	9 cut(s)	124, 136, 322, 397, 475, 516, 616, 848, 972
SmlI	CTYRAG	1 cut(s)	406
SmoI	CTYRAG	1 cut(s)	406
Sse9I	AATT	8 cut(s)	27, 386, 420, 429, 492, 648, 704, 724
SsiI	CCGC	1 cut(s)	141
SspMI	CTAG	3 cut(s)	48, 575, 599
StyD4I	CCNGG	1 cut(s)	181
StyI	CCWWGG	1 cut(s)	505
TaaI	ACNGT	3 cut(s)	485, 784, 812
TaqI	TCGA	2 cut(s)	519, 550
TasI	AATT	8 cut(s)	27, 386, 420, 429, 492, 648, 704, 724
TatI	WGTACW	2 cut(s)	235, 750
TfiI	GAWTC	4 cut(s)	137, 680, 689, 744
Tru1I	TTAA	4 cut(s)	407, 530, 837, 972
Tru9I	TTAA	4 cut(s)	407, 530, 837, 972
TscAI	CASTG	2 cut(s)	1042, 1066
TseI	GCWGC	3 cut(s)	452, 614, 854
TspDTI	ATGAA	4 cut(s)	432, 485, 791, 838
TspRI	CASTG	2 cut(s)	1042, 1066
Vha464I	CTTAAG	1 cut(s)	406
XapI	RAATTY	2 cut(s)	420, 492
XbaI	TCTAGA	1 cut(s)	574
XceI	RCATGY	1 cut(s)	86
XspI	CTAG	3 cut(s)	48, 575, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.