Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Forward (+)

53733114 .. 53735732

Gene Structure 2619 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20634

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGTACATTTGTGGGGAGTGAAGCCAGAAGGAGTTGTTTTAGCGCCATTGACTAGACAGCGATCATATGGAAATGTTCCCCAGCCACATGCGATCTTATATTACTCTCAGAGAACATCTAAAGGAGGTCTTCTCATAACTGAAGCCACTGGAGTTTCTGACACAGCACAAGGGTATCCAGATACTCCTGGTATATGGACAAAGGAGCAAGTTGAAGCATGGAAACCCATTGTCAATGCTGTACATGCTAAAGGGGGTATCTTCTTCTGTCAGATTGTGCATGTGGGGAGGGTTTCAAATACTGGCTTTCAGCCAAATGGGCAGGTTCCCATCTCTTCTACTGACAAGCCCCTAACCCCCCAAGTACGATCTAATGGCATTGATGTTGCGCAATTCACACCTCCAAGACGATTAAGGACAGATGAAATTCCTCAAATTGTCAATGATTTTAGACTTGCTGCAAGGAATGCTATGGAAGCTGGCTTTGATGGGGTTGAAATTCATGGCGCCCATGGCTACCTTATCGATCAGTTTTTAAAAGATCAAGTAAATGATCGAACAGACCAATATGGTGGATCTCTAGAAAAGCGTTGCCGATTTGCACTAGACATTGTTGAAGCTGTTGTCAATGAGATAGGAGCAGATAAAGTTGGAATTAGATTATCTCCATTTGCTGACTATATGGAATCCGGAGATTCTAATCCAAAAGAATTGGGCCTTTATCTAGTCAATTCCTTGAACAAATATCGAATCCTGTACTGCCACATGGTTGAGCCAAGAATGAAGACACTTGGAGAAAAAAGTGAATGTCCCCAGAGTCTCGTACCCATGAGAAAGGCTTTCAATGGTACCTTCATTGCTGCTGGTGGTTTTGACAGGAAAGATGGGAACAATGCTGTGGCTGAGGGCCGTGCAGATCTTATCGCTTTTGGTCGTTGGTTCTTGGCTAATCCAGATTTGCCAAAGAGATTTGAGCTTAATGCTCCTCTAAATAAGTACAACAGAGATACATTCTACATATCTGATCCGGTTCTTGGTTACACTGATTATCCATTTCTTGACAGCACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

357

Amino Acids

39.63

Weight (kDa)

6.67

Isoelectric Point (pI)

31.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	12 - 330	2.3e-79	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	390
Acc36I	ACCTGC	1 cut(s)	313
Acc65I	GGTACC	1 cut(s)	848
AccB1I	GGYRCC	2 cut(s)	506, 848
AccIII	TCCGGA	1 cut(s)	689
AclWI	GGATC	2 cut(s)	583, 1019
AcsI	RAATTY	2 cut(s)	426, 498
AcuI	CTGAAG	1 cut(s)	162
AcyI	GRCGYC	1 cut(s)	507
AfaI	GTAC	7 cut(s)	6, 243, 366, 758, 825, 850, 998
AfiI	CCNNNNNNNGG	1 cut(s)	1034
AgsI	TTSAA	6 cut(s)	215, 297, 497, 617, 739, 844
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	3 cut(s)	479, 620, 976
AluI	AGCT	3 cut(s)	479, 620, 976
Alw26I	GTCTC	1 cut(s)	824
AlwI	GGATC	2 cut(s)	583, 1019
Aor13HI	TCCGGA	1 cut(s)	689
AoxI	GGCC	2 cut(s)	715, 907
ApeKI	GCWGC	2 cut(s)	458, 860
ApoI	RAATTY	2 cut(s)	426, 498
Asp718I	GGTACC	1 cut(s)	848
AspLEI	GCGC	3 cut(s)	46, 391, 509
AspS9I	GGNCC	2 cut(s)	715, 907
BaeI	ACNNNNGTAYC	3 cut(s)	29, 158, 191
BanI	GGYRCC	2 cut(s)	506, 848
BbsI	GAAGAC	2 cut(s)	122, 791
BbvCI	CCTCAGC	1 cut(s)	903
BbvI	GCAGC	2 cut(s)	445, 847
BccI	CCATC	3 cut(s)	338, 482, 878
BceAI	ACGGC	1 cut(s)	894
BciT130I	CCWGG	1 cut(s)	189
BciVI	GTATCC	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	824
BfaI	CTAG	4 cut(s)	54, 581, 605, 725
BfoI	RGCGCY	2 cut(s)	47, 510
BfuAI	ACCTGC	1 cut(s)	313
BfuI	GTATCC	1 cut(s)	186
BglI	GCCNNNNNGGC	1 cut(s)	319
BglII	AGATCT	1 cut(s)	916
BisI	GCNGC	2 cut(s)	459, 861
BlsI	GCNGC	2 cut(s)	460, 862
Bme1390I	CCNGG	1 cut(s)	189
BmgT120I	GGNCC	2 cut(s)	715, 907
BmiI	GGNNCC	3 cut(s)	327, 508, 850
BmrFI	CCNGG	1 cut(s)	189
BpiI	GAAGAC	2 cut(s)	122, 791
BplI	GAGNNNNNCTC	2 cut(s)	117, 149
BpmI	CTGGAG	1 cut(s)	171
Bpu10I	CCTNAGC	1 cut(s)	903
Bsa29I	ATCGAT	1 cut(s)	525
BsaBI	GATNNNNATC	1 cut(s)	699
BsaHI	GRCGYC	1 cut(s)	507
BsaJI	CCNNGG	1 cut(s)	511
BsaWI	WCCGGW	2 cut(s)	689, 1027
Bsc4I	CCNNNNNNNGG	1 cut(s)	1034
Bse1I	ACTGG	2 cut(s)	154, 307
Bse3DI	GCAATG	1 cut(s)	855
Bse8I	GATNNNNATC	1 cut(s)	699
BseAI	TCCGGA	1 cut(s)	689
BseBI	CCWGG	1 cut(s)	189
BseCI	ATCGAT	1 cut(s)	525
BseDI	CCNNGG	1 cut(s)	511
BseJI	GATNNNNATC	1 cut(s)	699
BseLI	CCNNNNNNNGG	1 cut(s)	1034
BseMI	GCAATG	1 cut(s)	855
BseMII	CTCAG	2 cut(s)	122, 894
BseNI	ACTGG	2 cut(s)	154, 307
BseRI	GAGGAG	1 cut(s)	975
BseXI	GCAGC	2 cut(s)	445, 847
BseYI	CCCAGC	1 cut(s)	81
BsgI	GTGCAG	1 cut(s)	933
BshFI	GGCC	2 cut(s)	717, 909
BshNI	GGYRCC	2 cut(s)	506, 848
BshVI	ATCGAT	1 cut(s)	525
BsiSI	CCGG	2 cut(s)	690, 1028
BslFI	GGGAC	1 cut(s)	795
BslI	CCNNNNNNNGG	1 cut(s)	1034
BsmAI	GTCTC	1 cut(s)	824
BsmFI	GGGAC	1 cut(s)	795
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	2 cut(s)	717, 909
Bsp13I	TCCGGA	1 cut(s)	689
Bsp1407I	TGTACA	1 cut(s)	241
Bsp143I	GATC	9 cut(s)	62, 93, 368, 526, 541, 553, 575, 916, 1024
Bsp19I	CCATGG	1 cut(s)	511
BspANI	GGCC	2 cut(s)	717, 909
BspCNI	CTCAG	2 cut(s)	121, 895
BspDI	ATCGAT	1 cut(s)	525
BspEI	TCCGGA	1 cut(s)	689
BspLI	GGNNCC	3 cut(s)	327, 508, 850
BspMI	ACCTGC	1 cut(s)	313
BspPI	GGATC	2 cut(s)	583, 1019
BspT107I	GGYRCC	2 cut(s)	506, 848
BsrDI	GCAATG	1 cut(s)	855
BsrGI	TGTACA	1 cut(s)	241
BsrI	ACTGG	2 cut(s)	154, 307
BssECI	CCNNGG	1 cut(s)	511
BssMI	GATC	9 cut(s)	62, 93, 368, 526, 541, 553, 575, 916, 1024
BssNI	GRCGYC	1 cut(s)	507
BssT1I	CCWWGG	1 cut(s)	511
Bst2UI	CCWGG	1 cut(s)	189
Bst6I	CTCTTC	1 cut(s)	340
BstACI	GRCGYC	1 cut(s)	507
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstAUI	TGTACA	1 cut(s)	241
BstC8I	GCNNGC	1 cut(s)	481
BstDEI	CTNAG	2 cut(s)	108, 903
BstDSI	CCRYGG	1 cut(s)	511
BstH2I	RGCGCY	2 cut(s)	47, 510
BstHHI	GCGC	3 cut(s)	46, 391, 509
BstKTI	GATC	9 cut(s)	65, 96, 371, 529, 544, 556, 578, 919, 1027
BstMAI	GTCTC	1 cut(s)	824
BstMBI	GATC	9 cut(s)	62, 93, 368, 526, 541, 553, 575, 916, 1024
BstMWI	GCNNNNNNNGC	5 cut(s)	245, 319, 467, 476, 513
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	3 cut(s)	92, 248, 284
BstSCI	CCNGG	1 cut(s)	187
BstV1I	GCAGC	2 cut(s)	445, 847
BstV2I	GAAGAC	2 cut(s)	122, 791
BstX2I	RGATCY	2 cut(s)	575, 916
BstXI	CCANNNNNNTGG	1 cut(s)	572
BstYI	RGATCY	2 cut(s)	575, 916
Bsu15I	ATCGAT	1 cut(s)	525
BsuI	GTATCC	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	717, 909
BsuTUI	ATCGAT	1 cut(s)	525
BtgI	CCRYGG	1 cut(s)	511
BtsI	GCAGTG	1 cut(s)	1065
BtsIMutI	CAGTG	3 cut(s)	147, 1041, 1065
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	1 cut(s)	481
CfoI	GCGC	3 cut(s)	46, 391, 509
Cfr13I	GGNCC	2 cut(s)	715, 907
ClaI	ATCGAT	1 cut(s)	525
Csp6I	GTAC	7 cut(s)	5, 242, 365, 757, 824, 849, 997
CviAII	CATG	8 cut(s)	89, 219, 245, 281, 503, 512, 766, 829
CviQI	GTAC	7 cut(s)	5, 242, 365, 757, 824, 849, 997
DdeI	CTNAG	2 cut(s)	108, 903
DinI	GGCGCC	1 cut(s)	508
DpnI	GATC	9 cut(s)	64, 95, 370, 528, 543, 555, 577, 918, 1026
DpnII	GATC	9 cut(s)	62, 93, 368, 526, 541, 553, 575, 916, 1024
DraI	TTTAAA	1 cut(s)	537
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	511
EgeI	GGCGCC	1 cut(s)	508
EheI	GGCGCC	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	511
FaeI	CATG	8 cut(s)	92, 222, 248, 284, 506, 515, 769, 832
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FaqI	GGGAC	1 cut(s)	795
FatI	CATG	8 cut(s)	88, 218, 244, 280, 502, 511, 765, 828
FauNDI	CATATG	1 cut(s)	67
Fnu4HI	GCNGC	2 cut(s)	459, 861
Fsp4HI	GCNGC	2 cut(s)	459, 861
FspBI	CTAG	4 cut(s)	54, 581, 605, 725
FspI	TGCGCA	1 cut(s)	390
GlaI	GCGC	3 cut(s)	45, 390, 508
GluI	GCNGC	2 cut(s)	459, 861
GsaI	CCCAGC	1 cut(s)	85
GsuI	CTGGAG	1 cut(s)	171
HaeII	RGCGCY	2 cut(s)	47, 510
HaeIII	GGCC	2 cut(s)	717, 909
HapII	CCGG	2 cut(s)	690, 1028
HhaI	GCGC	3 cut(s)	46, 391, 509
Hin1I	GRCGYC	1 cut(s)	507
Hin1II	CATG	8 cut(s)	92, 222, 248, 284, 506, 515, 769, 832
Hin6I	GCGC	3 cut(s)	44, 389, 507
HinP1I	GCGC	3 cut(s)	44, 389, 507
HinfI	GANTC	4 cut(s)	686, 695, 750, 817
HpaII	CCGG	2 cut(s)	690, 1028
Hpy188I	TCNGA	4 cut(s)	111, 160, 273, 1024
Hpy188III	TCNNGA	5 cut(s)	179, 581, 690, 953, 1058
HpyAV	CCTTC	2 cut(s)	23, 862
HpyCH4V	TGCA	4 cut(s)	280, 461, 602, 914
HpyF10VI	GCNNNNNNNGC	5 cut(s)	245, 319, 467, 476, 513
HpyF3I	CTNAG	2 cut(s)	108, 903
Hsp92I	GRCGYC	1 cut(s)	507
Hsp92II	CATG	8 cut(s)	92, 222, 248, 284, 506, 515, 769, 832
HspAI	GCGC	3 cut(s)	44, 389, 507
KasI	GGCGCC	1 cut(s)	506
Kpn2I	TCCGGA	1 cut(s)	689
KpnI	GGTACC	1 cut(s)	852
Kzo9I	GATC	9 cut(s)	62, 93, 368, 526, 541, 553, 575, 916, 1024
LmnI	GCTCC	3 cut(s)	205, 638, 988
Lsp1109I	GCAGC	2 cut(s)	445, 847
MaeI	CTAG	4 cut(s)	54, 581, 605, 725
MaeIII	GTNAC	1 cut(s)	1037
MalI	GATC	9 cut(s)	64, 95, 370, 528, 543, 555, 577, 918, 1026
MboI	GATC	9 cut(s)	62, 93, 368, 526, 541, 553, 575, 916, 1024
MboII	GAAGA	5 cut(s)	122, 253, 256, 327, 796
MflI	RGATCY	2 cut(s)	575, 916
MluCI	AATT	7 cut(s)	392, 426, 435, 498, 654, 710, 730
Mly113I	GGCGCC	1 cut(s)	507
MlyI	GAGTC	1 cut(s)	826
MmeI	TCCRAC	1 cut(s)	631
MnlI	CCTC	6 cut(s)	119, 282, 411, 441, 898, 996
MroI	TCCGGA	1 cut(s)	689
MseI	TTAA	3 cut(s)	413, 536, 978
MspI	CCGG	2 cut(s)	690, 1028
MspR9I	CCNGG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	472
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	5 cut(s)	245, 319, 467, 476, 513
NarI	GGCGCC	1 cut(s)	507
NcoI	CCATGG	1 cut(s)	511
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	9 cut(s)	62, 93, 368, 526, 541, 553, 575, 916, 1024
NlaIII	CATG	8 cut(s)	92, 222, 248, 284, 506, 515, 769, 832
NlaIV	GGNNCC	3 cut(s)	327, 508, 850
NsbI	TGCGCA	1 cut(s)	390
NspI	RCATGY	3 cut(s)	92, 248, 284
PctI	GAATGC	1 cut(s)	472
PfeI	GAWTC	3 cut(s)	686, 695, 750
PkrI	GCNGC	2 cut(s)	460, 862
PleI	GAGTC	1 cut(s)	825
PluTI	GGCGCC	1 cut(s)	510
PpsI	GAGTC	1 cut(s)	825
Psp6I	CCWGG	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	3 cut(s)	327, 508, 850
PspPI	GGNCC	2 cut(s)	715, 907
PsuI	RGATCY	2 cut(s)	575, 916
RsaI	GTAC	7 cut(s)	6, 243, 366, 758, 825, 850, 998
RsaNI	GTAC	7 cut(s)	5, 242, 365, 757, 824, 849, 997
SaqAI	TTAA	3 cut(s)	413, 536, 978
SatI	GCNGC	2 cut(s)	459, 861
Sau3AI	GATC	9 cut(s)	62, 93, 368, 526, 541, 553, 575, 916, 1024
Sau96I	GGNCC	2 cut(s)	715, 907
SchI	GAGTC	1 cut(s)	826
ScrFI	CCNGG	1 cut(s)	189
SetI	ASST	8 cut(s)	130, 327, 403, 481, 522, 622, 854, 978
SfoI	GGCGCC	1 cut(s)	508
Sse9I	AATT	7 cut(s)	392, 426, 435, 498, 654, 710, 730
SspDI	GGCGCC	1 cut(s)	506
SspMI	CTAG	4 cut(s)	54, 581, 605, 725
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	511
TaqI	TCGA	3 cut(s)	525, 556, 748
TasI	AATT	7 cut(s)	392, 426, 435, 498, 654, 710, 730
TatI	WGTACW	3 cut(s)	241, 756, 996
TfiI	GAWTC	3 cut(s)	686, 695, 750
Tru1I	TTAA	3 cut(s)	413, 536, 978
Tru9I	TTAA	3 cut(s)	413, 536, 978
TscAI	CASTG	3 cut(s)	154, 1048, 1072
TseI	GCWGC	2 cut(s)	458, 860
TspDTI	ATGAA	4 cut(s)	438, 491, 797, 844
TspRI	CASTG	3 cut(s)	154, 1048, 1072
XapI	RAATTY	2 cut(s)	426, 498
XbaI	TCTAGA	1 cut(s)	580
XceI	RCATGY	3 cut(s)	92, 248, 284
XspI	CTAG	4 cut(s)	54, 581, 605, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.